RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 LSRQ86X29 649 aaPredicted RBP13.34□□□□□ -0.27
LIG1-215ENST00000597901 P3H2Q8IVL5 708 aa13.34□□□□□ -0.27
LIG1-215ENST00000597901 DYDC1Q8WWB3 177 aa13.34□□□□□ -0.27
LIG1-215ENST00000597901 TMEM19Q96HH6 336 aa13.34□□□□□ -0.27
LIG1-215ENST00000597901 CCL19Q99731 98 aa13.34□□□□□ -0.27
LIG1-215ENST00000597901 NGBQ9NPG2 151 aa13.34□□□□□ -0.27
LIG1-215ENST00000597901 SLC52A3Q9NQ40 469 aa13.34□□□□□ -0.27
LIG1-215ENST00000597901 EMC3Q9P0I2 261 aa13.34□□□□□ -0.27
LIG1-215ENST00000597901 SLAMF8Q9P0V8 285 aa13.34□□□□□ -0.27
LIG1-215ENST00000597901 NOSIPQ9Y314 301 aaKnown RBP13.34□□□□□ -0.27
LIG1-215ENST00000597901 CHST2Q9Y4C5 530 aa13.34□□□□□ -0.27
LIG1-215ENST00000597901 A0A096LPI6 279 aa13.33□□□□□ -0.28
LIG1-215ENST00000597901 ZC3H12DA2A288 527 aaKnown RBP13.33□□□□□ -0.28
LIG1-215ENST00000597901 TMEM247A6NEH6 219 aa13.33□□□□□ -0.28
LIG1-215ENST00000597901 GPR171O14626 319 aa13.33□□□□□ -0.28
LIG1-215ENST00000597901 RAMP1O60894 148 aa13.33□□□□□ -0.28
LIG1-215ENST00000597901 LYZL6O75951 148 aa13.33□□□□□ -0.28
LIG1-215ENST00000597901 CNOT4O95628 575 aaKnown RBP13.33□□□□□ -0.28
LIG1-215ENST00000597901 HOXB9P17482 250 aaPredicted RBP13.33□□□□□ -0.28
LIG1-215ENST00000597901 IGHV1-2P23083 117 aa13.33□□□□□ -0.28
LIG1-215ENST00000597901 CXCR1P25024 350 aa13.33□□□□□ -0.28
LIG1-215ENST00000597901 SLC16A1P53985 500 aa13.33□□□□□ -0.28
LIG1-215ENST00000597901 SLC35A1P78382 337 aa13.33□□□□□ -0.28
LIG1-215ENST00000597901 CAPRIN1Q14444 709 aaKnown RBP13.33□□□□□ -0.28
LIG1-215ENST00000597901 ZSWIM7Q19AV6 140 aa13.33□□□□□ -0.28
LIG1-215ENST00000597901 KRTAP21-3Q3LHN1 58 aa13.33□□□□□ -0.28
LIG1-215ENST00000597901 LIN52Q52LA3 116 aa13.33□□□□□ -0.28
LIG1-215ENST00000597901 RPS26P11Q5JNZ5 115 aaPredicted RBP13.33□□□□□ -0.28
LIG1-215ENST00000597901 NCMAPQ5T1S8 102 aa13.33□□□□□ -0.28
LIG1-215ENST00000597901 FBXW9Q5XUX1 488 aa13.33□□□□□ -0.28
LIG1-215ENST00000597901 PIGXQ8TBF5 258 aa13.33□□□□□ -0.28
LIG1-215ENST00000597901 NAA11Q9BSU3 229 aaPredicted RBP13.33□□□□□ -0.28
LIG1-215ENST00000597901 SPATA9Q9BWV2 254 aa13.33□□□□□ -0.28
LIG1-215ENST00000597901 POTEKPQ9BYX7 375 aa13.33□□□□□ -0.28
LIG1-215ENST00000597901 RAD21L1Q9H4I0 556 aa13.33□□□□□ -0.28
LIG1-215ENST00000597901 GSX1Q9H4S2 264 aaPredicted RBP13.33□□□□□ -0.28
LIG1-215ENST00000597901 BCL2L10Q9HD36 194 aa13.33□□□□□ -0.28
LIG1-215ENST00000597901 INTS9Q9NV88 658 aaKnown RBP13.33□□□□□ -0.28
LIG1-215ENST00000597901 CCDC167Q9P0B6 97 aa13.33□□□□□ -0.28
LIG1-215ENST00000597901 ZNF443Q9Y2A4 671 aaPredicted RBP13.33□□□□□ -0.28
LIG1-215ENST00000597901 IFT52Q9Y366 437 aa13.33□□□□□ -0.28
LIG1-215ENST00000597901 HEATR5AQ86XA9 2040 aa13.32□□□□□ -0.28
LIG1-215ENST00000597901 HMGB1P1B2RPK0 211 aaPredicted RBP13.32□□□□□ -0.28
LIG1-215ENST00000597901 EIF1BO60739 113 aaKnown RBP13.32□□□□□ -0.28
LIG1-215ENST00000597901 MRPL33O75394 65 aaKnown RBP13.32□□□□□ -0.28
LIG1-215ENST00000597901 PGM3O95394 542 aa13.32□□□□□ -0.28
LIG1-215ENST00000597901 THBS1P07996 1170 aa13.32□□□□□ -0.28
LIG1-215ENST00000597901 BMP2P12643 396 aa13.32□□□□□ -0.28
LIG1-215ENST00000597901 PRG2P13727 222 aa13.32□□□□□ -0.28
LIG1-215ENST00000597901 COPZ1P61923 177 aa13.32□□□□□ -0.28
LIG1-215ENST00000597901 ZNF311Q5JNZ3 666 aa13.32□□□□□ -0.28
LIG1-215ENST00000597901 PAGE3Q5JUK9 113 aa13.32□□□□□ -0.28
LIG1-215ENST00000597901 LRIF1Q5T3J3 769 aa13.32□□□□□ -0.28
LIG1-215ENST00000597901 RNF220Q5VTB9 566 aa13.32□□□□□ -0.28
LIG1-215ENST00000597901 WBP2NLQ6ICG8 309 aa13.32□□□□□ -0.28
LIG1-215ENST00000597901 MSRB3Q8IXL7 192 aa13.32□□□□□ -0.28
LIG1-215ENST00000597901 UBE2J2Q8N2K1 259 aa13.32□□□□□ -0.28
LIG1-215ENST00000597901 CADM2Q8N3J6 435 aa13.32□□□□□ -0.28
LIG1-215ENST00000597901 GOLGA6L1Q8N7Z2 621 aa13.32□□□□□ -0.28
LIG1-215ENST00000597901 ZNF611Q8N823 705 aa13.32□□□□□ -0.28
LIG1-215ENST00000597901 LILRB1Q8NHL6 650 aaPredicted RBP13.32□□□□□ -0.28
LIG1-215ENST00000597901 CKAP2Q8WWK9 683 aa13.32□□□□□ -0.28
LIG1-215ENST00000597901 IGFBPL1Q8WX77 278 aa13.32□□□□□ -0.28
LIG1-215ENST00000597901 AKAP1Q92667 903 aaKnown RBP eCLIP13.32□□□□□ -0.28
LIG1-215ENST00000597901 MAL2Q969L2 176 aa13.32□□□□□ -0.28
LIG1-215ENST00000597901 APH1AQ96BI3 265 aa13.32□□□□□ -0.28
LIG1-215ENST00000597901 SPDL1Q96EA4 605 aa13.32□□□□□ -0.28
LIG1-215ENST00000597901 ARMC7Q9H6L4 198 aa13.32□□□□□ -0.28
LIG1-215ENST00000597901 ESRP2Q9H6T0 727 aaKnown RBP13.32□□□□□ -0.28
LIG1-215ENST00000597901 VIPAS39Q9H9C1 493 aa13.32□□□□□ -0.28
LIG1-215ENST00000597901 A4GALTQ9NPC4 353 aa13.32□□□□□ -0.28
LIG1-215ENST00000597901 TMEM45AQ9NWC5 275 aa13.32□□□□□ -0.28
LIG1-215ENST00000597901 SLC25A37Q9NYZ2 338 aa13.32□□□□□ -0.28
LIG1-215ENST00000597901 DPRXA6NFQ7 191 aa13.31□□□□□ -0.28
LIG1-215ENST00000597901 HS3ST1O14792 307 aa13.31□□□□□ -0.28
LIG1-215ENST00000597901 IGHV3-9P01782 118 aa13.31□□□□□ -0.28
LIG1-215ENST00000597901 GGT1P19440 569 aa13.31□□□□□ -0.28
LIG1-215ENST00000597901 BNIP2Q12982 314 aa13.31□□□□□ -0.28
LIG1-215ENST00000597901 FADDQ13158 208 aa13.31□□□□□ -0.28
LIG1-215ENST00000597901 CEACAM7Q14002 265 aa13.31□□□□□ -0.28
LIG1-215ENST00000597901 AGKQ53H12 422 aa13.31□□□□□ -0.28
LIG1-215ENST00000597901 PRAMEF8Q5VWM4 474 aa13.31□□□□□ -0.28
LIG1-215ENST00000597901 PRAMEF7Q5VXH5 474 aa13.31□□□□□ -0.28
LIG1-215ENST00000597901 ADAM5Q6NVV9 412 aa13.31□□□□□ -0.28
LIG1-215ENST00000597901 PRSS57Q6UWY2 283 aa13.31□□□□□ -0.28
LIG1-215ENST00000597901 P2RY8Q86VZ1 359 aa13.31□□□□□ -0.28
LIG1-215ENST00000597901 ZNF433Q8N7K0 673 aaPredicted RBP13.31□□□□□ -0.28
LIG1-215ENST00000597901 MUCL1Q96DR8 90 aa13.31□□□□□ -0.28
LIG1-215ENST00000597901 MAGEB18Q96M61 343 aa13.31□□□□□ -0.28
LIG1-215ENST00000597901 CACYBPQ9HB71 228 aaKnown RBP13.31□□□□□ -0.28
LIG1-215ENST00000597901 PARPBPQ9NWS1 579 aa13.31□□□□□ -0.28
LIG1-215ENST00000597901 RNF115Q9Y4L5 304 aa13.31□□□□□ -0.28
LIG1-215ENST00000597901 LIPT2A6NK58 231 aa13.3□□□□□ -0.28
LIG1-215ENST00000597901 C5orf58C9J3I9 102 aa13.3□□□□□ -0.28
LIG1-215ENST00000597901 NR5A2O00482 541 aa13.3□□□□□ -0.28
LIG1-215ENST00000597901 CD3EP07766 207 aa13.3□□□□□ -0.28
LIG1-215ENST00000597901 NCF2P19878 526 aaPredicted RBP13.3□□□□□ -0.28
LIG1-215ENST00000597901 COX5AP20674 150 aa13.3□□□□□ -0.28
LIG1-215ENST00000597901 ADSLP30566 484 aaPredicted RBP13.3□□□□□ -0.28
LIG1-215ENST00000597901 IDUAP35475 653 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms