RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 POC1BQ8TC44 478 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 NRG4Q8WWG1 115 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 TM9SF4Q92544 642 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 NRGNQ92686 78 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 C3orf49Q96BT1 292 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 C1GALT1C1Q96EU7 318 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 SLC41A3Q96GZ6 507 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 JSRP1Q96MG2 331 aaPredicted RBP8.53□□□□□ -1.04
TRIM28-208ENST00000597172 BDH2Q9BUT1 245 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 FNDC11Q9BVV2 318 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 ZFP64Q9NPA5 681 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 MED17Q9NVC6 651 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 C6orf203Q9P0P8 240 aaPredicted RBP8.53□□□□□ -1.04
TRIM28-208ENST00000597172 TNFRSF10DQ9UBN6 386 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 PRDM4Q9UKN5 801 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 SLC7A7Q9UM01 511 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 MAGED1Q9Y5V3 778 aaPredicted RBP8.53□□□□□ -1.04
TRIM28-208ENST00000597172 LYVE1Q9Y5Y7 322 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 U3KQV3 271 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 NCOA6Q14686 2063 aaPredicted RBP8.53□□□□□ -1.04
TRIM28-208ENST00000597172 GTF3C1Q12789 2109 aa8.53□□□□□ -1.04
TRIM28-208ENST00000597172 EML6Q6ZMW3 1958 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 A0A087WUU8 490 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 TNFSF12-TNFSF13A0A0A6YY99 330 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 TRAV17A0A0B4J275 112 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 TRBV4-1A0A0J9YWV2 114 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 A0A1W2PRQ8 180 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 RNF212BA8MTL3 300 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 SHISA8B8ZZ34 492 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 KLRC4-KLRK1H3BQV0 150 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 TNFRSF11BO00300 401 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 GNGT2O14610 69 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 ADAMDEC1O15204 470 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 EFNA2O43921 213 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 GLSO94925 669 aaPredicted RBP8.52□□□□□ -1.05
TRIM28-208ENST00000597172 GADD45GO95257 159 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 NUDT14O95848 222 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 HEXAP06865 529 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 H1F0P07305 194 aaKnown RBP8.52□□□□□ -1.05
TRIM28-208ENST00000597172 PRKCAP17252 672 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 AGAP20933 346 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 PCSK6P29122 969 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 MASP1P48740 699 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 COPZ1P61923 177 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 ADAM8P78325 824 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 SPIBQ01892 262 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 ST3GAL3Q11203 375 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 DGCR6Q14129 220 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 EXOC3L2Q2M3D2 409 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 HYAL4Q2M3T9 481 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 TMEM44Q2T9K0 475 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 PLPPR5Q32ZL2 321 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 SLC25A53Q5H9E4 307 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 RNFT1Q5M7Z0 435 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 ANKRD34AQ69YU3 496 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 PODNL1Q6PEZ8 512 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 ULK3Q6PHR2 472 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.52□□□□□ -1.05
TRIM28-208ENST00000597172 ATG4DQ86TL0 474 aaPredicted RBP8.52□□□□□ -1.05
TRIM28-208ENST00000597172 ADGRG3Q86Y34 549 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 EPHX4Q8IUS5 362 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 ZFP62Q8NB50 900 aaPredicted RBP8.52□□□□□ -1.05
TRIM28-208ENST00000597172 OR4K17Q8NGC6 315 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 OR5K1Q8NHB7 308 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 ZNF563Q8TA94 476 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 SLC7A13Q8TCU3 470 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 NR4A3Q92570 626 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 SLC38A4Q969I6 547 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 C18orf12Q96KH6 178 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 ALPK1Q96QP1 1244 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 EPYCQ99645 322 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 SLX1AQ9BQ83 275 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 ZNF426Q9BUY5 554 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 ENKD1Q9H0I2 346 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 UBQLN3Q9H347 655 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 HHATLQ9HCP6 504 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 TAS2R10Q9NYW0 307 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 OSGIN1Q9UJX0 560 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 VDAC3Q9Y277 283 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 C15orf41Q9Y2V0 281 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 KLF13Q9Y2Y9 288 aaPredicted RBP8.52□□□□□ -1.05
TRIM28-208ENST00000597172 SAMHD1Q9Y3Z3 626 aaKnown RBP8.52□□□□□ -1.05
TRIM28-208ENST00000597172 PCNX3Q9H6A9 2034 aa8.52□□□□□ -1.05
TRIM28-208ENST00000597172 NINQ8N4C6 2090 aa8.51□□□□□ -1.05
TRIM28-208ENST00000597172 A0A087WUJ7 227 aa8.51□□□□□ -1.05
TRIM28-208ENST00000597172 A0A087WZY1 265 aa8.51□□□□□ -1.05
TRIM28-208ENST00000597172 SH3PXD2BA1X283 911 aa8.51□□□□□ -1.05
TRIM28-208ENST00000597172 SAC3D1A6NKF1 404 aa8.51□□□□□ -1.05
TRIM28-208ENST00000597172 CASQ2O14958 399 aaPredicted RBP8.51□□□□□ -1.05
TRIM28-208ENST00000597172 CHP2O43745 196 aa8.51□□□□□ -1.05
TRIM28-208ENST00000597172 WISP2O76076 250 aa8.51□□□□□ -1.05
TRIM28-208ENST00000597172 CLDN14O95500 239 aa8.51□□□□□ -1.05
TRIM28-208ENST00000597172 INHBBP09529 407 aa8.51□□□□□ -1.05
TRIM28-208ENST00000597172 THRBP10828 461 aa8.51□□□□□ -1.05
TRIM28-208ENST00000597172 FPR1P21462 350 aa8.51□□□□□ -1.05
TRIM28-208ENST00000597172 PRKACGP22612 351 aa8.51□□□□□ -1.05
TRIM28-208ENST00000597172 DPP4P27487 766 aa8.51□□□□□ -1.05
TRIM28-208ENST00000597172 TACR3P29371 465 aa8.51□□□□□ -1.05
TRIM28-208ENST00000597172 RFC3P40938 356 aa8.51□□□□□ -1.05
TRIM28-208ENST00000597172 SMSP52788 366 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms