RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 IGHV3-9P01782 118 aa11.53□□□□□ -0.56
LIG1-212ENST00000596549 THBS1P07996 1170 aa11.53□□□□□ -0.56
LIG1-212ENST00000596549 SLC1A3P43003 542 aa11.53□□□□□ -0.56
LIG1-212ENST00000596549 HTR3AP46098 478 aa11.53□□□□□ -0.56
LIG1-212ENST00000596549 CLK1P49759 484 aaKnown RBP11.53□□□□□ -0.56
LIG1-212ENST00000596549 AQP5P55064 265 aa11.53□□□□□ -0.56
LIG1-212ENST00000596549 STX1BP61266 288 aa11.53□□□□□ -0.56
LIG1-212ENST00000596549 GNA13Q14344 377 aa11.53□□□□□ -0.56
LIG1-212ENST00000596549 P2RY6Q15077 328 aa11.53□□□□□ -0.56
LIG1-212ENST00000596549 RGNQ15493 299 aa11.53□□□□□ -0.56
LIG1-212ENST00000596549 PAGE3Q5JUK9 113 aa11.53□□□□□ -0.56
LIG1-212ENST00000596549 NCMAPQ5T1S8 102 aa11.53□□□□□ -0.56
LIG1-212ENST00000596549 SHEQ5VZ18 495 aa11.53□□□□□ -0.56
LIG1-212ENST00000596549 ALKBH2Q6NS38 261 aa11.53□□□□□ -0.56
LIG1-212ENST00000596549 BLOC1S3Q6QNY0 202 aa11.53□□□□□ -0.56
LIG1-212ENST00000596549 GALNT5Q7Z7M9 940 aa11.53□□□□□ -0.56
LIG1-212ENST00000596549 CLIP4Q8N3C7 705 aa11.53□□□□□ -0.56
LIG1-212ENST00000596549 PIGXQ8TBF5 258 aa11.53□□□□□ -0.56
LIG1-212ENST00000596549 PMM1Q92871 262 aa11.53□□□□□ -0.56
LIG1-212ENST00000596549 PIGTQ969N2 578 aa11.53□□□□□ -0.56
LIG1-212ENST00000596549 ZHX1-C8orf76Q96EF9 292 aa11.53□□□□□ -0.56
LIG1-212ENST00000596549 PERPQ96FX8 193 aa11.53□□□□□ -0.56
LIG1-212ENST00000596549 SMR3AQ99954 134 aa11.53□□□□□ -0.56
LIG1-212ENST00000596549 CCDC28BQ9BUN5 200 aa11.53□□□□□ -0.56
LIG1-212ENST00000596549 HDHD5Q9BXW7 423 aa11.53□□□□□ -0.56
LIG1-212ENST00000596549 ADAM19Q9H013 955 aa11.53□□□□□ -0.56
LIG1-212ENST00000596549 A4GALTQ9NPC4 353 aa11.53□□□□□ -0.56
LIG1-212ENST00000596549 NPAP1Q9NZP6 1156 aa11.53□□□□□ -0.56
LIG1-212ENST00000596549 CALML5Q9NZT1 146 aa11.53□□□□□ -0.56
LIG1-212ENST00000596549 CCDC167Q9P0B6 97 aa11.53□□□□□ -0.56
LIG1-212ENST00000596549 TMEM181Q9P2C4 612 aa11.53□□□□□ -0.56
LIG1-212ENST00000596549 A0A096LPI6 279 aa11.52□□□□□ -0.57
LIG1-212ENST00000596549 CLIC1O00299 241 aa11.52□□□□□ -0.57
LIG1-212ENST00000596549 FRS3O43559 492 aa11.52□□□□□ -0.57
LIG1-212ENST00000596549 H2AFXP16104 143 aaPredicted RBP11.52□□□□□ -0.57
LIG1-212ENST00000596549 ADSLP30566 484 aaPredicted RBP11.52□□□□□ -0.57
LIG1-212ENST00000596549 PTH2RP49190 550 aa11.52□□□□□ -0.57
LIG1-212ENST00000596549 FOXG1P55316 489 aaPredicted RBP11.52□□□□□ -0.57
LIG1-212ENST00000596549 OR2B6P58173 313 aa11.52□□□□□ -0.57
LIG1-212ENST00000596549 FADDQ13158 208 aa11.52□□□□□ -0.57
LIG1-212ENST00000596549 STK11Q15831 433 aa11.52□□□□□ -0.57
LIG1-212ENST00000596549 SERPINA11Q86U17 422 aa11.52□□□□□ -0.57
LIG1-212ENST00000596549 COMTD1Q86VU5 262 aa11.52□□□□□ -0.57
LIG1-212ENST00000596549 ZNF440Q8IYI8 595 aa11.52□□□□□ -0.57
LIG1-212ENST00000596549 ZNF611Q8N823 705 aa11.52□□□□□ -0.57
LIG1-212ENST00000596549 KBTBD8Q8NFY9 601 aa11.52□□□□□ -0.57
LIG1-212ENST00000596549 AKAP1Q92667 903 aaKnown RBP eCLIP11.52□□□□□ -0.57
LIG1-212ENST00000596549 NEUROG1Q92886 237 aa11.52□□□□□ -0.57
LIG1-212ENST00000596549 DDIT4LQ96D03 193 aa11.52□□□□□ -0.57
LIG1-212ENST00000596549 SPDL1Q96EA4 605 aa11.52□□□□□ -0.57
LIG1-212ENST00000596549 SPATA9Q9BWV2 254 aa11.52□□□□□ -0.57
LIG1-212ENST00000596549 GSX2Q9BZM3 304 aa11.52□□□□□ -0.57
LIG1-212ENST00000596549 IKZF5Q9H5V7 419 aa11.52□□□□□ -0.57
LIG1-212ENST00000596549 EMC3Q9P0I2 261 aa11.52□□□□□ -0.57
LIG1-212ENST00000596549 VAPAQ9P0L0 249 aa11.52□□□□□ -0.57
LIG1-212ENST00000596549 MALT1Q9UDY8 824 aa11.52□□□□□ -0.57
LIG1-212ENST00000596549 TRAPPC4Q9Y296 219 aa11.52□□□□□ -0.57
LIG1-212ENST00000596549 NOSIPQ9Y314 301 aaKnown RBP11.52□□□□□ -0.57
LIG1-212ENST00000596549 RNF115Q9Y4L5 304 aa11.52□□□□□ -0.57
LIG1-212ENST00000596549 FLVCR1Q9Y5Y0 555 aa11.52□□□□□ -0.57
LIG1-212ENST00000596549 ACANP16112 2415 aa11.52□□□□□ -0.57
LIG1-212ENST00000596549 MAP1AP78559 2803 aaPredicted RBP11.51□□□□□ -0.57
LIG1-212ENST00000596549 A0A0G2JPF8 293 aa11.51□□□□□ -0.57
LIG1-212ENST00000596549 TMEM229AB2RXF0 380 aa11.51□□□□□ -0.57
LIG1-212ENST00000596549 HNRNPCL2B2RXH8 293 aa11.51□□□□□ -0.57
LIG1-212ENST00000596549 HNRNPCL3B7ZW38 293 aa11.51□□□□□ -0.57
LIG1-212ENST00000596549 HNRNPCL1O60812 293 aaKnown RBP11.51□□□□□ -0.57
LIG1-212ENST00000596549 RAD51DO75771 328 aa11.51□□□□□ -0.57
LIG1-212ENST00000596549 SASH3O75995 380 aa11.51□□□□□ -0.57
LIG1-212ENST00000596549 PGM3O95394 542 aa11.51□□□□□ -0.57
LIG1-212ENST00000596549 CNOT4O95628 575 aaKnown RBP11.51□□□□□ -0.57
LIG1-212ENST00000596549 HNRNPCL4P0DMR1 293 aa11.51□□□□□ -0.57
LIG1-212ENST00000596549 UQCRBP14927 111 aa11.51□□□□□ -0.57
LIG1-212ENST00000596549 FOSL1P15407 271 aa11.51□□□□□ -0.57
LIG1-212ENST00000596549 FKBP2P26885 142 aaKnown RBP11.51□□□□□ -0.57
LIG1-212ENST00000596549 IDUAP35475 653 aa11.51□□□□□ -0.57
LIG1-212ENST00000596549 BSPH1Q075Z2 132 aa11.51□□□□□ -0.57
LIG1-212ENST00000596549 BNIP2Q12982 314 aa11.51□□□□□ -0.57
LIG1-212ENST00000596549 SLC17A1Q14916 467 aa11.51□□□□□ -0.57
LIG1-212ENST00000596549 FBXW9Q5XUX1 488 aa11.51□□□□□ -0.57
LIG1-212ENST00000596549 ADAM5Q6NVV9 412 aa11.51□□□□□ -0.57
LIG1-212ENST00000596549 PAQR6Q6TCH4 344 aa11.51□□□□□ -0.57
LIG1-212ENST00000596549 P3H2Q8IVL5 708 aa11.51□□□□□ -0.57
LIG1-212ENST00000596549 ZNF100Q8IYN0 542 aa11.51□□□□□ -0.57
LIG1-212ENST00000596549 CIARTQ8N365 385 aaPredicted RBP11.51□□□□□ -0.57
LIG1-212ENST00000596549 CADM2Q8N3J6 435 aa11.51□□□□□ -0.57
LIG1-212ENST00000596549 ZNF433Q8N7K0 673 aaPredicted RBP11.51□□□□□ -0.57
LIG1-212ENST00000596549 GOLGA6L1Q8N7Z2 621 aa11.51□□□□□ -0.57
LIG1-212ENST00000596549 OR52E4Q8NGH9 312 aa11.51□□□□□ -0.57
LIG1-212ENST00000596549 BBS10Q8TAM1 723 aa11.51□□□□□ -0.57
LIG1-212ENST00000596549 APH1AQ96BI3 265 aa11.51□□□□□ -0.57
LIG1-212ENST00000596549 C3orf49Q96BT1 292 aa11.51□□□□□ -0.57
LIG1-212ENST00000596549 C18orf12Q96KH6 178 aa11.51□□□□□ -0.57
LIG1-212ENST00000596549 Q96MF0 132 aa11.51□□□□□ -0.57
LIG1-212ENST00000596549 ZNF385DQ9H6B1 395 aa11.51□□□□□ -0.57
LIG1-212ENST00000596549 BCL2L10Q9HD36 194 aa11.51□□□□□ -0.57
LIG1-212ENST00000596549 INTS9Q9NV88 658 aaKnown RBP11.51□□□□□ -0.57
LIG1-212ENST00000596549 THUMPD1Q9NXG2 353 aaKnown RBP11.51□□□□□ -0.57
LIG1-212ENST00000596549 CR1P17927 2039 aa11.51□□□□□ -0.57
LIG1-212ENST00000596549 DPRXA6NFQ7 191 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms