RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 FAM171A2A8MVW0 826 aa11.11□□□□□ -0.63
UPF1-203ENST00000594504 CYP7B1O75881 506 aa11.11□□□□□ -0.63
UPF1-203ENST00000594504 THBS1P07996 1170 aa11.11□□□□□ -0.63
UPF1-203ENST00000594504 LINGO3P0C6S8 592 aa11.11□□□□□ -0.63
UPF1-203ENST00000594504 PGCP20142 388 aa11.11□□□□□ -0.63
UPF1-203ENST00000594504 ADH6P28332 368 aa11.11□□□□□ -0.63
UPF1-203ENST00000594504 AGTR1P30556 359 aa11.11□□□□□ -0.63
UPF1-203ENST00000594504 CARD18P57730 90 aa11.11□□□□□ -0.63
UPF1-203ENST00000594504 MTPNP58546 118 aa11.11□□□□□ -0.63
UPF1-203ENST00000594504 CDK6Q00534 326 aa11.11□□□□□ -0.63
UPF1-203ENST00000594504 FOXF1Q12946 379 aa11.11□□□□□ -0.63
UPF1-203ENST00000594504 CAPRIN1Q14444 709 aaKnown RBP11.11□□□□□ -0.63
UPF1-203ENST00000594504 TOMM34Q15785 309 aaPredicted RBP11.11□□□□□ -0.63
UPF1-203ENST00000594504 ZSWIM7Q19AV6 140 aa11.11□□□□□ -0.63
UPF1-203ENST00000594504 LIN52Q52LA3 116 aa11.11□□□□□ -0.63
UPF1-203ENST00000594504 RPS26P11Q5JNZ5 115 aaPredicted RBP11.11□□□□□ -0.63
UPF1-203ENST00000594504 REEP3Q6NUK4 255 aa11.11□□□□□ -0.63
UPF1-203ENST00000594504 BEND4Q6ZU67 534 aa11.11□□□□□ -0.63
UPF1-203ENST00000594504 ESPNLQ6ZVH7 1005 aa11.11□□□□□ -0.63
UPF1-203ENST00000594504 PIGWQ7Z7B1 504 aa11.11□□□□□ -0.63
UPF1-203ENST00000594504 HMGN2P46Q86SG4 172 aa11.11□□□□□ -0.63
UPF1-203ENST00000594504 TUSC5Q8IXB3 177 aa11.11□□□□□ -0.63
UPF1-203ENST00000594504 C10orf111Q8N326 155 aa11.11□□□□□ -0.63
UPF1-203ENST00000594504 OR8J3Q8NGG0 315 aa11.11□□□□□ -0.63
UPF1-203ENST00000594504 OR52P1PQ8NH57 321 aa11.11□□□□□ -0.63
UPF1-203ENST00000594504 LILRB1Q8NHL6 650 aaPredicted RBP11.11□□□□□ -0.63
UPF1-203ENST00000594504 FBXO27Q8NI29 283 aa11.11□□□□□ -0.63
UPF1-203ENST00000594504 ABHD3Q8WU67 409 aa11.11□□□□□ -0.63
UPF1-203ENST00000594504 AKAP1Q92667 903 aaKnown RBP eCLIP11.11□□□□□ -0.63
UPF1-203ENST00000594504 MDFIQ99750 246 aa11.11□□□□□ -0.63
UPF1-203ENST00000594504 SH3GL1Q99961 368 aa11.11□□□□□ -0.63
UPF1-203ENST00000594504 MYLK2Q9H1R3 596 aa11.11□□□□□ -0.63
UPF1-203ENST00000594504 KAT8Q9H7Z6 458 aaKnown RBP11.11□□□□□ -0.63
UPF1-203ENST00000594504 GID8Q9NWU2 228 aa11.11□□□□□ -0.63
UPF1-203ENST00000594504 PAQR5Q9NXK6 330 aaPredicted RBP11.11□□□□□ -0.63
UPF1-203ENST00000594504 ZNF232Q9UNY5 417 aa11.11□□□□□ -0.63
UPF1-203ENST00000594504 IFT52Q9Y366 437 aa11.11□□□□□ -0.63
UPF1-203ENST00000594504 GPC6Q9Y625 555 aaPredicted RBP11.11□□□□□ -0.63
UPF1-203ENST00000594504 PRR14LQ5THK1 2151 aa11.1□□□□□ -0.63
UPF1-203ENST00000594504 CLDN24A6NM45 220 aa11.1□□□□□ -0.63
UPF1-203ENST00000594504 FXYD1O00168 92 aa11.1□□□□□ -0.63
UPF1-203ENST00000594504 ETV2O00321 342 aaPredicted RBP11.1□□□□□ -0.63
UPF1-203ENST00000594504 BCAS1O75363 584 aaPredicted RBP11.1□□□□□ -0.63
UPF1-203ENST00000594504 PGM3O95394 542 aa11.1□□□□□ -0.63
UPF1-203ENST00000594504 COX4I1P13073 169 aa11.1□□□□□ -0.63
UPF1-203ENST00000594504 ETS2P15036 469 aa11.1□□□□□ -0.63
UPF1-203ENST00000594504 PPP3CBP16298 524 aa11.1□□□□□ -0.63
UPF1-203ENST00000594504 PRKCAP17252 672 aa11.1□□□□□ -0.63
UPF1-203ENST00000594504 ME2P23368 584 aa11.1□□□□□ -0.63
UPF1-203ENST00000594504 SLC6A2P23975 617 aa11.1□□□□□ -0.63
UPF1-203ENST00000594504 ELK4P28324 431 aa11.1□□□□□ -0.63
UPF1-203ENST00000594504 PLAURQ03405 335 aa11.1□□□□□ -0.63
UPF1-203ENST00000594504 RBBP4Q09028 425 aa11.1□□□□□ -0.63
UPF1-203ENST00000594504 SCARB2Q14108 478 aa11.1□□□□□ -0.63
UPF1-203ENST00000594504 SELPLGQ14242 412 aa11.1□□□□□ -0.63
UPF1-203ENST00000594504 LARS2Q15031 903 aaKnown RBP11.1□□□□□ -0.63
UPF1-203ENST00000594504 QPRTQ15274 297 aa11.1□□□□□ -0.63
UPF1-203ENST00000594504 ADRM1Q16186 407 aa11.1□□□□□ -0.63
UPF1-203ENST00000594504 CYP51A1Q16850 503 aa11.1□□□□□ -0.63
UPF1-203ENST00000594504 TMEM176BQ3YBM2 270 aaPredicted RBP11.1□□□□□ -0.63
UPF1-203ENST00000594504 SLC25A53Q5H9E4 307 aa11.1□□□□□ -0.63
UPF1-203ENST00000594504 MRPL2Q5T653 305 aaKnown RBP11.1□□□□□ -0.63
UPF1-203ENST00000594504 NANOGP8Q6NSW7 305 aa11.1□□□□□ -0.63
UPF1-203ENST00000594504 NET1Q7Z628 596 aaPredicted RBP11.1□□□□□ -0.63
UPF1-203ENST00000594504 ATG4DQ86TL0 474 aaPredicted RBP11.1□□□□□ -0.63
UPF1-203ENST00000594504 KRT73Q86Y46 540 aa11.1□□□□□ -0.63
UPF1-203ENST00000594504 ZNF440Q8IYI8 595 aa11.1□□□□□ -0.63
UPF1-203ENST00000594504 POU5F2Q8N7G0 328 aa11.1□□□□□ -0.63
UPF1-203ENST00000594504 C11orf65Q8NCR3 313 aa11.1□□□□□ -0.63
UPF1-203ENST00000594504 MAPK1IP1LQ8NDC0 245 aa11.1□□□□□ -0.63
UPF1-203ENST00000594504 NFKBIDQ8NI38 313 aa11.1□□□□□ -0.63
UPF1-203ENST00000594504 TMEM171Q8WVE6 324 aa11.1□□□□□ -0.63
UPF1-203ENST00000594504 ST8SIA1Q92185 356 aa11.1□□□□□ -0.63
UPF1-203ENST00000594504 NEUROG1Q92886 237 aa11.1□□□□□ -0.63
UPF1-203ENST00000594504 S100PBPQ96BU1 408 aa11.1□□□□□ -0.63
UPF1-203ENST00000594504 LRRC58Q96CX6 371 aa11.1□□□□□ -0.63
UPF1-203ENST00000594504 MRGPRX4Q96LA9 322 aa11.1□□□□□ -0.63
UPF1-203ENST00000594504 KLHL15Q96M94 604 aa11.1□□□□□ -0.63
UPF1-203ENST00000594504 ARMC7Q9H6L4 198 aa11.1□□□□□ -0.63
UPF1-203ENST00000594504 NANOGQ9H9S0 305 aa11.1□□□□□ -0.63
UPF1-203ENST00000594504 GLRX2Q9NS18 164 aa11.1□□□□□ -0.63
UPF1-203ENST00000594504 LAMP3Q9UQV4 416 aa11.1□□□□□ -0.63
UPF1-203ENST00000594504 ZNF443Q9Y2A4 671 aaPredicted RBP11.1□□□□□ -0.63
UPF1-203ENST00000594504 GPR52Q9Y2T5 361 aa11.1□□□□□ -0.63
UPF1-203ENST00000594504 ARL2BPQ9Y2Y0 163 aa11.1□□□□□ -0.63
UPF1-203ENST00000594504 NAV3Q8IVL0 2385 aa11.09□□□□□ -0.63
UPF1-203ENST00000594504 IGHV3-15A0A0B4J1V0 119 aa11.09□□□□□ -0.63
UPF1-203ENST00000594504 CDHR4A6H8M9 788 aa11.09□□□□□ -0.63
UPF1-203ENST00000594504 HS3ST1O14792 307 aa11.09□□□□□ -0.63
UPF1-203ENST00000594504 GCM2O75603 506 aaPredicted RBP11.09□□□□□ -0.63
UPF1-203ENST00000594504 PABPC4LP0CB38 370 aaKnown RBP11.09□□□□□ -0.63
UPF1-203ENST00000594504 ENPP1P22413 925 aa11.09□□□□□ -0.63
UPF1-203ENST00000594504 ATP5J2P56134 94 aa11.09□□□□□ -0.63
UPF1-203ENST00000594504 TNK1Q13470 666 aa11.09□□□□□ -0.63
UPF1-203ENST00000594504 ZNF239Q16600 458 aaKnown RBP11.09□□□□□ -0.63
UPF1-203ENST00000594504 RABL3Q5HYI8 236 aa11.09□□□□□ -0.63
UPF1-203ENST00000594504 TMEM201Q5SNT2 666 aa11.09□□□□□ -0.63
UPF1-203ENST00000594504 PDSS1Q5T2R2 415 aa11.09□□□□□ -0.63
UPF1-203ENST00000594504 RNF220Q5VTB9 566 aa11.09□□□□□ -0.63
UPF1-203ENST00000594504 GTF2IRD2BQ6EKJ0 949 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms