RNA–Protein interactions for RNA: ENST00000593706.3

PNKP-202, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 849 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-202ENST00000593706 CDC42EP3Q9UKI2 254 aa13□□□□□ -0.33
PNKP-202ENST00000593706 MGAT4BQ9UQ53 548 aa13□□□□□ -0.33
PNKP-202ENST00000593706 SERINC4A6NH21 518 aa12.99□□□□□ -0.33
PNKP-202ENST00000593706 DUXAA6NLW8 204 aa12.99□□□□□ -0.33
PNKP-202ENST00000593706 KIAA0513O60268 411 aa12.99□□□□□ -0.33
PNKP-202ENST00000593706 GPRIN2O60269 458 aa12.99□□□□□ -0.33
PNKP-202ENST00000593706 AK1P00568 194 aa12.99□□□□□ -0.33
PNKP-202ENST00000593706 CSTAP01040 98 aa12.99□□□□□ -0.33
PNKP-202ENST00000593706 UBTFL6P0CB48 400 aaPredicted RBP12.99□□□□□ -0.33
PNKP-202ENST00000593706 TFPIP10646 304 aa12.99□□□□□ -0.33
PNKP-202ENST00000593706 IDO1P14902 403 aa12.99□□□□□ -0.33
PNKP-202ENST00000593706 PGCP20142 388 aa12.99□□□□□ -0.33
PNKP-202ENST00000593706 CDKN2CP42773 168 aa12.99□□□□□ -0.33
PNKP-202ENST00000593706 ZNF83P51522 516 aa12.99□□□□□ -0.33
PNKP-202ENST00000593706 IRX1P78414 480 aaPredicted RBP12.99□□□□□ -0.33
PNKP-202ENST00000593706 PLAURQ03405 335 aa12.99□□□□□ -0.33
PNKP-202ENST00000593706 CHRNEQ04844 493 aa12.99□□□□□ -0.33
PNKP-202ENST00000593706 SPOCK1Q08629 439 aa12.99□□□□□ -0.33
PNKP-202ENST00000593706 TMEM249Q2WGJ8 235 aa12.99□□□□□ -0.33
PNKP-202ENST00000593706 PDCD4Q53EL6 469 aaKnown RBP12.99□□□□□ -0.33
PNKP-202ENST00000593706 SYT14P1Q58G82 188 aa12.99□□□□□ -0.33
PNKP-202ENST00000593706 ABLIM2Q6H8Q1 611 aa12.99□□□□□ -0.33
PNKP-202ENST00000593706 OLIG3Q7RTU3 272 aa12.99□□□□□ -0.33
PNKP-202ENST00000593706 C16orf62Q7Z3J2 963 aa12.99□□□□□ -0.33
PNKP-202ENST00000593706 ZNF433Q8N7K0 673 aaPredicted RBP12.99□□□□□ -0.33
PNKP-202ENST00000593706 FAM71CQ8NEG0 241 aa12.99□□□□□ -0.33
PNKP-202ENST00000593706 SLC25A43Q8WUT9 341 aaPredicted RBP12.99□□□□□ -0.33
PNKP-202ENST00000593706 APH1AQ96BI3 265 aa12.99□□□□□ -0.33
PNKP-202ENST00000593706 ZHX1-C8orf76Q96EF9 292 aa12.99□□□□□ -0.33
PNKP-202ENST00000593706 INPP5KQ9BT40 448 aa12.99□□□□□ -0.33
PNKP-202ENST00000593706 SAP130Q9H0E3 1048 aa12.99□□□□□ -0.33
PNKP-202ENST00000593706 CBLN4Q9NTU7 201 aa12.99□□□□□ -0.33
PNKP-202ENST00000593706 NOSIPQ9Y314 301 aaKnown RBP12.99□□□□□ -0.33
PNKP-202ENST00000593706 SPIN1Q9Y657 262 aaPredicted RBP12.99□□□□□ -0.33
PNKP-202ENST00000593706 HMGN4O00479 90 aa12.98□□□□□ -0.33
PNKP-202ENST00000593706 PHF1O43189 567 aaPredicted RBP12.98□□□□□ -0.33
PNKP-202ENST00000593706 UGT2B17O75795 530 aa12.98□□□□□ -0.33
PNKP-202ENST00000593706 FAM157CP0CG43 387 aa12.98□□□□□ -0.33
PNKP-202ENST00000593706 TTKP33981 857 aa12.98□□□□□ -0.33
PNKP-202ENST00000593706 MRPL19P49406 292 aaKnown RBP12.98□□□□□ -0.33
PNKP-202ENST00000593706 CASP9P55211 416 aa12.98□□□□□ -0.33
PNKP-202ENST00000593706 SESN3P58005 492 aa12.98□□□□□ -0.33
PNKP-202ENST00000593706 DSCR9P59020 149 aa12.98□□□□□ -0.33
PNKP-202ENST00000593706 RAB35Q15286 201 aa12.98□□□□□ -0.33
PNKP-202ENST00000593706 MAPK14Q16539 360 aa12.98□□□□□ -0.33
PNKP-202ENST00000593706 FBXW9Q5XUX1 488 aa12.98□□□□□ -0.33
PNKP-202ENST00000593706 TNFAIP8L2Q6P589 184 aaPredicted RBP12.98□□□□□ -0.33
PNKP-202ENST00000593706 EPGNQ6UW88 154 aa12.98□□□□□ -0.33
PNKP-202ENST00000593706 TMPPEQ6ZT21 453 aa12.98□□□□□ -0.33
PNKP-202ENST00000593706 DEPDC4Q8N2C3 294 aa12.98□□□□□ -0.33
PNKP-202ENST00000593706 MUC15Q8N387 334 aa12.98□□□□□ -0.33
PNKP-202ENST00000593706 ZNF525Q8N782 197 aa12.98□□□□□ -0.33
PNKP-202ENST00000593706 GLB1L3Q8NCI6 653 aaPredicted RBP12.98□□□□□ -0.33
PNKP-202ENST00000593706 VPS37AQ8NEZ2 397 aa12.98□□□□□ -0.33
PNKP-202ENST00000593706 OIT3Q8WWZ8 545 aa12.98□□□□□ -0.33
PNKP-202ENST00000593706 HTRA1Q92743 480 aa12.98□□□□□ -0.33
PNKP-202ENST00000593706 RAB8BQ92930 207 aa12.98□□□□□ -0.33
PNKP-202ENST00000593706 DNAJA3Q96EY1 480 aa12.98□□□□□ -0.33
PNKP-202ENST00000593706 DHRS9Q9BPW9 319 aa12.98□□□□□ -0.33
PNKP-202ENST00000593706 SLC35A5Q9BS91 424 aa12.98□□□□□ -0.33
PNKP-202ENST00000593706 LAT2Q9GZY6 243 aa12.98□□□□□ -0.33
PNKP-202ENST00000593706 VIPAS39Q9H9C1 493 aa12.98□□□□□ -0.33
PNKP-202ENST00000593706 SLCO1B3Q9NPD5 702 aa12.98□□□□□ -0.33
PNKP-202ENST00000593706 SLC6A13Q9NSD5 602 aa12.98□□□□□ -0.33
PNKP-202ENST00000593706 ASB6Q9NWX5 421 aa12.98□□□□□ -0.33
PNKP-202ENST00000593706 MKLN1Q9UL63 735 aa12.98□□□□□ -0.33
PNKP-202ENST00000593706 PCDHGB4Q9UN71 923 aa12.98□□□□□ -0.33
PNKP-202ENST00000593706 A0A1W2PR80 420 aa12.97□□□□□ -0.33
PNKP-202ENST00000593706 CCDC154A6NI56 674 aa12.97□□□□□ -0.33
PNKP-202ENST00000593706 E7EQL1 145 aa12.97□□□□□ -0.33
PNKP-202ENST00000593706 M0R1B8 84 aa12.97□□□□□ -0.33
PNKP-202ENST00000593706 BCAS1O75363 584 aaPredicted RBP12.97□□□□□ -0.33
PNKP-202ENST00000593706 STX11O75558 287 aa12.97□□□□□ -0.33
PNKP-202ENST00000593706 PGM3O95394 542 aa12.97□□□□□ -0.33
PNKP-202ENST00000593706 CPSF4O95639 269 aaKnown RBP12.97□□□□□ -0.33
PNKP-202ENST00000593706 OR12D1P0DN82 309 aa12.97□□□□□ -0.33
PNKP-202ENST00000593706 PTAFRP25105 342 aa12.97□□□□□ -0.33
PNKP-202ENST00000593706 KHKP50053 298 aa12.97□□□□□ -0.33
PNKP-202ENST00000593706 FABP6P51161 128 aa12.97□□□□□ -0.33
PNKP-202ENST00000593706 MVDP53602 400 aa12.97□□□□□ -0.33
PNKP-202ENST00000593706 GSTA3Q16772 222 aa12.97□□□□□ -0.33
PNKP-202ENST00000593706 TYW3Q6IPR3 259 aaKnown RBP12.97□□□□□ -0.33
PNKP-202ENST00000593706 C11orf71Q6IPW1 123 aa12.97□□□□□ -0.33
PNKP-202ENST00000593706 FRRS1Q6ZNA5 592 aa12.97□□□□□ -0.33
PNKP-202ENST00000593706 EIF3MQ7L2H7 374 aaKnown RBP12.97□□□□□ -0.33
PNKP-202ENST00000593706 ZNF563Q8TA94 476 aa12.97□□□□□ -0.33
PNKP-202ENST00000593706 PIGXQ8TBF5 258 aa12.97□□□□□ -0.33
PNKP-202ENST00000593706 FAM168AQ92567 244 aa12.97□□□□□ -0.33
PNKP-202ENST00000593706 OR52E6Q96RD3 313 aa12.97□□□□□ -0.33
PNKP-202ENST00000593706 TNFRSF13CQ96RJ3 184 aa12.97□□□□□ -0.33
PNKP-202ENST00000593706 KCNK17Q96T54 332 aa12.97□□□□□ -0.33
PNKP-202ENST00000593706 POLE3Q9NRF9 147 aa12.97□□□□□ -0.33
PNKP-202ENST00000593706 ACER3Q9NUN7 267 aa12.97□□□□□ -0.33
PNKP-202ENST00000593706 TAS2R16Q9NYV7 291 aa12.97□□□□□ -0.33
PNKP-202ENST00000593706 ZIM2Q9NZV7 527 aa12.97□□□□□ -0.33
PNKP-202ENST00000593706 USH1CQ9Y6N9 552 aa12.97□□□□□ -0.33
PNKP-202ENST00000593706 IGKV3D-15A0A087WSY6 115 aa12.96□□□□□ -0.33
PNKP-202ENST00000593706 GPR171O14626 319 aa12.96□□□□□ -0.33
PNKP-202ENST00000593706 SLC22A3O75751 556 aa12.96□□□□□ -0.33
PNKP-202ENST00000593706 AGR2O95994 175 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms