RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 SPOCK1Q08629 439 aa21.03■□□□□ 0.96
LSM4-202ENST00000593564 GABRA6Q16445 453 aa21.03■□□□□ 0.96
LSM4-202ENST00000593564 GPAT3Q53EU6 434 aa21.03■□□□□ 0.96
LSM4-202ENST00000593564 SPANXN4Q5MJ08 99 aa21.03■□□□□ 0.96
LSM4-202ENST00000593564 HMGN2P46Q86SG4 172 aa21.03■□□□□ 0.96
LSM4-202ENST00000593564 CMIPQ8IY22 773 aa21.03■□□□□ 0.96
LSM4-202ENST00000593564 LRRC34Q8IZ02 419 aa21.03■□□□□ 0.96
LSM4-202ENST00000593564 OR10H5Q8NGA6 315 aa21.03■□□□□ 0.96
LSM4-202ENST00000593564 SLC35A5Q9BS91 424 aa21.03■□□□□ 0.96
LSM4-202ENST00000593564 POU2F3Q9UKI9 436 aa21.03■□□□□ 0.96
LSM4-202ENST00000593564 A0A096LNT2 108 aa21.02■□□□□ 0.96
LSM4-202ENST00000593564 PDLIM1O00151 329 aa21.02■□□□□ 0.96
LSM4-202ENST00000593564 HMGN4O00479 90 aa21.02■□□□□ 0.96
LSM4-202ENST00000593564 BIRC5O15392 142 aa21.02■□□□□ 0.96
LSM4-202ENST00000593564 ITGA5P08648 1049 aa21.02■□□□□ 0.96
LSM4-202ENST00000593564 RPL14P50914 215 aaKnown RBP21.02■□□□□ 0.96
LSM4-202ENST00000593564 OR2B6P58173 313 aa21.02■□□□□ 0.96
LSM4-202ENST00000593564 DSCR9P59020 149 aa21.02■□□□□ 0.96
LSM4-202ENST00000593564 HMBOX1Q6NT76 420 aa21.02■□□□□ 0.96
LSM4-202ENST00000593564 FBXL14Q8N1E6 418 aa21.02■□□□□ 0.96
LSM4-202ENST00000593564 MUC15Q8N387 334 aa21.02■□□□□ 0.96
LSM4-202ENST00000593564 CNOT9Q92600 299 aaKnown RBP21.02■□□□□ 0.96
LSM4-202ENST00000593564 AMBRA1Q9C0C7 1298 aa21.02■□□□□ 0.96
LSM4-202ENST00000593564 C20orf27Q9GZN8 174 aa21.02■□□□□ 0.96
LSM4-202ENST00000593564 TMED7-TICAM2A0A0A6YYA0 188 aa21.01■□□□□ 0.95
LSM4-202ENST00000593564 A0A1W2PR80 420 aa21.01■□□□□ 0.95
LSM4-202ENST00000593564 E9PBE3 544 aa21.01■□□□□ 0.95
LSM4-202ENST00000593564 ZNF208O43345 1280 aa21.01■□□□□ 0.95
LSM4-202ENST00000593564 EIF1BO60739 113 aaKnown RBP21.01■□□□□ 0.95
LSM4-202ENST00000593564 IFNA2P01563 188 aa21.01■□□□□ 0.95
LSM4-202ENST00000593564 LBPP18428 481 aa21.01■□□□□ 0.95
LSM4-202ENST00000593564 CCNA2P20248 432 aa21.01■□□□□ 0.95
LSM4-202ENST00000593564 FOXG1P55316 489 aaPredicted RBP21.01■□□□□ 0.95
LSM4-202ENST00000593564 PODNL1Q6PEZ8 512 aa21.01■□□□□ 0.95
LSM4-202ENST00000593564 CLEC2AQ6UVW9 174 aa21.01■□□□□ 0.95
LSM4-202ENST00000593564 B3GLCTQ6Y288 498 aa21.01■□□□□ 0.95
LSM4-202ENST00000593564 KIRREL3Q8IZU9 778 aa21.01■□□□□ 0.95
LSM4-202ENST00000593564 DEPDC4Q8N2C3 294 aa21.01■□□□□ 0.95
LSM4-202ENST00000593564 TRIM44Q96DX7 344 aaPredicted RBP21.01■□□□□ 0.95
LSM4-202ENST00000593564 CCDC115Q96NT0 180 aa21.01■□□□□ 0.95
LSM4-202ENST00000593564 TRNT1Q96Q11 434 aaKnown RBP21.01■□□□□ 0.95
LSM4-202ENST00000593564 SORT1Q99523 831 aa21.01■□□□□ 0.95
LSM4-202ENST00000593564 BTNL2Q9UIR0 455 aa21.01■□□□□ 0.95
LSM4-202ENST00000593564 HAO1Q9UJM8 370 aa21.01■□□□□ 0.95
LSM4-202ENST00000593564 DCTN4Q9UJW0 460 aa21.01■□□□□ 0.95
LSM4-202ENST00000593564 SLC9A8Q9Y2E8 581 aa21.01■□□□□ 0.95
LSM4-202ENST00000593564 TMED7Q9Y3B3 224 aa21.01■□□□□ 0.95
LSM4-202ENST00000593564 AGAP5A6NIR3 686 aa21■□□□□ 0.95
LSM4-202ENST00000593564 A8MV72 311 aaPredicted RBP21■□□□□ 0.95
LSM4-202ENST00000593564 M0R1B8 84 aa21■□□□□ 0.95
LSM4-202ENST00000593564 AP3D1O14617 1153 aa21■□□□□ 0.95
LSM4-202ENST00000593564 S100A3P33764 101 aa21■□□□□ 0.95
LSM4-202ENST00000593564 FABP6P51161 128 aa21■□□□□ 0.95
LSM4-202ENST00000593564 POLR2HP52434 150 aaKnown RBP21■□□□□ 0.95
LSM4-202ENST00000593564 SLC35A1P78382 337 aa21■□□□□ 0.95
LSM4-202ENST00000593564 TXNL4AP83876 142 aaKnown RBP21■□□□□ 0.95
LSM4-202ENST00000593564 FAM174BQ3ZCQ3 159 aa21■□□□□ 0.95
LSM4-202ENST00000593564 ZNF544Q6NX49 715 aa21■□□□□ 0.95
LSM4-202ENST00000593564 CASP12Q6UXS9 341 aa21■□□□□ 0.95
LSM4-202ENST00000593564 C17orf78Q8N4C9 275 aa21■□□□□ 0.95
LSM4-202ENST00000593564 ANKFN1Q8N957 763 aa21■□□□□ 0.95
LSM4-202ENST00000593564 WDR31Q8NA23 367 aa21■□□□□ 0.95
LSM4-202ENST00000593564 C1orf162Q8NEQ5 155 aaPredicted RBP21■□□□□ 0.95
LSM4-202ENST00000593564 OR52E4Q8NGH9 312 aa21■□□□□ 0.95
LSM4-202ENST00000593564 PMM1Q92871 262 aa21■□□□□ 0.95
LSM4-202ENST00000593564 DDIT4LQ96D03 193 aa21■□□□□ 0.95
LSM4-202ENST00000593564 INPP5KQ9BT40 448 aa21■□□□□ 0.95
LSM4-202ENST00000593564 REPIN1Q9BWE0 567 aaKnown RBP21■□□□□ 0.95
LSM4-202ENST00000593564 SLC38A1Q9H2H9 487 aa21■□□□□ 0.95
LSM4-202ENST00000593564 SSU72Q9NP77 194 aaKnown RBP21■□□□□ 0.95
LSM4-202ENST00000593564 PARPBPQ9NWS1 579 aa21■□□□□ 0.95
LSM4-202ENST00000593564 OSGIN1Q9UJX0 560 aa21■□□□□ 0.95
LSM4-202ENST00000593564 FLVCR1Q9Y5Y0 555 aa21■□□□□ 0.95
LSM4-202ENST00000593564 CUBNO60494 3623 aa20.99■□□□□ 0.95
LSM4-202ENST00000593564 H7C417 338 aa20.99■□□□□ 0.95
LSM4-202ENST00000593564 FAAHO00519 579 aa20.99■□□□□ 0.95
LSM4-202ENST00000593564 GPRIN2O60269 458 aa20.99■□□□□ 0.95
LSM4-202ENST00000593564 C1QCP02747 245 aa20.99■□□□□ 0.95
LSM4-202ENST00000593564 CHRM4P08173 479 aa20.99■□□□□ 0.95
LSM4-202ENST00000593564 IMPDH2P12268 514 aa20.99■□□□□ 0.95
LSM4-202ENST00000593564 SLC1A6P48664 564 aa20.99■□□□□ 0.95
LSM4-202ENST00000593564 MAP2K6P52564 334 aa20.99■□□□□ 0.95
LSM4-202ENST00000593564 RAB35Q15286 201 aa20.99■□□□□ 0.95
LSM4-202ENST00000593564 SYPL1Q16563 259 aa20.99■□□□□ 0.95
LSM4-202ENST00000593564 C1QTNF12Q5T7M4 302 aa20.99■□□□□ 0.95
LSM4-202ENST00000593564 RNF130Q86XS8 419 aa20.99■□□□□ 0.95
LSM4-202ENST00000593564 NAA11Q9BSU3 229 aaPredicted RBP20.99■□□□□ 0.95
LSM4-202ENST00000593564 NUF2Q9BZD4 464 aa20.99■□□□□ 0.95
LSM4-202ENST00000593564 TMEM72A0PK05 275 aa20.98■□□□□ 0.95
LSM4-202ENST00000593564 FAM234BA2RU67 622 aa20.98■□□□□ 0.95
LSM4-202ENST00000593564 ELOA3DA6NLF2 546 aaPredicted RBP20.98■□□□□ 0.95
LSM4-202ENST00000593564 RPS4Y1P22090 263 aaKnown RBP20.98■□□□□ 0.95
LSM4-202ENST00000593564 TACR3P29371 465 aa20.98■□□□□ 0.95
LSM4-202ENST00000593564 SLC1A3P43003 542 aa20.98■□□□□ 0.95
LSM4-202ENST00000593564 SLC17A1Q14916 467 aa20.98■□□□□ 0.95
LSM4-202ENST00000593564 KRT71Q3SY84 523 aa20.98■□□□□ 0.95
LSM4-202ENST00000593564 ELOA3BQ3SY89 546 aa20.98■□□□□ 0.95
LSM4-202ENST00000593564 CHRFAM7AQ494W8 412 aa20.98■□□□□ 0.95
LSM4-202ENST00000593564 OGFOD2Q6N063 350 aa20.98■□□□□ 0.95
LSM4-202ENST00000593564 PAQR6Q6TCH4 344 aa20.98■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms