RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 TIMM50Q3ZCQ8 353 aa8.49□□□□□ -1.05
SS18-220ENST00000582092 SYT6Q5T7P8 510 aaPredicted RBP8.49□□□□□ -1.05
SS18-220ENST00000582092 FAM69BQ5VUD6 431 aa8.49□□□□□ -1.05
SS18-220ENST00000582092 UBE2UQ5VVX9 321 aa8.49□□□□□ -1.05
SS18-220ENST00000582092 ARHGAP11AQ6P4F7 1023 aa8.49□□□□□ -1.05
SS18-220ENST00000582092 FAM199XQ6PEV8 388 aaPredicted RBP8.49□□□□□ -1.05
SS18-220ENST00000582092 INO80CQ6PI98 192 aaPredicted RBP8.49□□□□□ -1.05
SS18-220ENST00000582092 TMEM205Q6UW68 189 aa8.49□□□□□ -1.05
SS18-220ENST00000582092 CXXC5Q7LFL8 322 aaKnown RBP8.49□□□□□ -1.05
SS18-220ENST00000582092 P2RY8Q86VZ1 359 aa8.49□□□□□ -1.05
SS18-220ENST00000582092 SLC15A4Q8N697 577 aa8.49□□□□□ -1.05
SS18-220ENST00000582092 FAM98AQ8NCA5 519 aaKnown RBP8.49□□□□□ -1.05
SS18-220ENST00000582092 NLGN4YQ8NFZ3 816 aaPredicted RBP8.49□□□□□ -1.05
SS18-220ENST00000582092 OR13C2Q8NGS9 318 aa8.49□□□□□ -1.05
SS18-220ENST00000582092 OR5W2Q8NH69 310 aa8.49□□□□□ -1.05
SS18-220ENST00000582092 B4GALNT2Q8NHY0 566 aa8.49□□□□□ -1.05
SS18-220ENST00000582092 SNRNP27Q8WVK2 155 aaKnown RBP8.49□□□□□ -1.05
SS18-220ENST00000582092 RNFT2Q96EX2 444 aa8.49□□□□□ -1.05
SS18-220ENST00000582092 WBP1Q96G27 269 aa8.49□□□□□ -1.05
SS18-220ENST00000582092 LMF1Q96S06 567 aa8.49□□□□□ -1.05
SS18-220ENST00000582092 ARHGAP9Q9BRR9 750 aa8.49□□□□□ -1.05
SS18-220ENST00000582092 FUNDC2Q9BWH2 189 aa8.49□□□□□ -1.05
SS18-220ENST00000582092 MND1Q9BWT6 205 aa8.49□□□□□ -1.05
SS18-220ENST00000582092 PLA2G12AQ9BZM1 189 aa8.49□□□□□ -1.05
SS18-220ENST00000582092 SEMA4CQ9C0C4 833 aa8.49□□□□□ -1.05
SS18-220ENST00000582092 RBM38Q9H0Z9 239 aaKnown RBP8.49□□□□□ -1.05
SS18-220ENST00000582092 UBQLN3Q9H347 655 aa8.49□□□□□ -1.05
SS18-220ENST00000582092 METTL7AQ9H8H3 244 aa8.49□□□□□ -1.05
SS18-220ENST00000582092 CPNE5Q9HCH3 593 aa8.49□□□□□ -1.05
SS18-220ENST00000582092 ATP13A2Q9NQ11 1180 aa8.49□□□□□ -1.05
SS18-220ENST00000582092 FKBP14Q9NWM8 211 aa8.49□□□□□ -1.05
SS18-220ENST00000582092 KLRF1Q9NZS2 232 aa8.49□□□□□ -1.05
SS18-220ENST00000582092 IL20RAQ9UHF4 553 aa8.49□□□□□ -1.05
SS18-220ENST00000582092 KLHL21Q9UJP4 597 aa8.49□□□□□ -1.05
SS18-220ENST00000582092 ZNF223Q9UK11 482 aaPredicted RBP8.49□□□□□ -1.05
SS18-220ENST00000582092 ZNF337Q9Y3M9 751 aa8.49□□□□□ -1.05
SS18-220ENST00000582092 B3GALT1Q9Y5Z6 326 aa8.49□□□□□ -1.05
SS18-220ENST00000582092 SLC22A1O15245 554 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 SURF4O15260 269 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 ATXN7O15265 892 aaPredicted RBP8.48□□□□□ -1.05
SS18-220ENST00000582092 CDC40O60508 579 aaKnown RBP eCLIP8.48□□□□□ -1.05
SS18-220ENST00000582092 RAD1O60671 282 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 BCAS1O75363 584 aaPredicted RBP8.48□□□□□ -1.05
SS18-220ENST00000582092 OR7A10O76100 309 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 STK17BO94768 372 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 OR6A2O95222 327 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 NTN1O95631 604 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 TP53P04637 393 aaPredicted RBP8.48□□□□□ -1.05
SS18-220ENST00000582092 ICAM2P13598 275 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 CD36P16671 472 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 ZNF28P17035 718 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 TCN2P20062 427 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 TACR3P29371 465 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 C21orf33P30042 268 aaPredicted RBP8.48□□□□□ -1.05
SS18-220ENST00000582092 MTNR1AP48039 350 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 PRPS1P60891 318 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 LSM11P83369 360 aaKnown RBP eCLIP8.48□□□□□ -1.05
SS18-220ENST00000582092 ZNF91Q05481 1191 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 RAB40BQ12829 278 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 CD226Q15762 336 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 ANKDD1AQ495B1 522 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 KLHL12Q53G59 568 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 SYT14P1Q58G82 188 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 ARMCX4Q5H9R4 360 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 SLC35F1Q5T1Q4 408 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 ARMC4Q5T2S8 1044 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 ZNF385CQ66K41 422 aaPredicted RBP8.48□□□□□ -1.05
SS18-220ENST00000582092 MRPL14Q6P1L8 145 aaKnown RBP8.48□□□□□ -1.05
SS18-220ENST00000582092 POMZP3Q6PJE2 187 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 DTX1Q86Y01 620 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 ANKRD13BQ86YJ7 626 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 ESX1Q8N693 406 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 BMPERQ8N8U9 685 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 POGLUT1Q8NBL1 392 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 NFAM1Q8NET5 270 aaPredicted RBP8.48□□□□□ -1.05
SS18-220ENST00000582092 OR8D4Q8NGM9 314 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 DUSP19Q8WTR2 217 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 TTC9Q92623 222 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 C8orf44Q96CB5 159 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 MRPL48Q96GC5 212 aaKnown RBP8.48□□□□□ -1.05
SS18-220ENST00000582092 ERMAPQ96PL5 475 aaPredicted RBP8.48□□□□□ -1.05
SS18-220ENST00000582092 TNFRSF13CQ96RJ3 184 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 SPSB2Q99619 263 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 DCUN1D5Q9BTE7 237 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 TMEM43Q9BTV4 400 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 CDCA4Q9BXL8 241 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 FN3KQ9H479 309 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 C12orf10Q9HB07 376 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 NANSQ9NR45 359 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 FOXJ2Q9P0K8 574 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 PPP4R1LQ9P1A2 415 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 ICAM5Q9UMF0 924 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 SSUH2Q9Y2M2 353 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 GPR52Q9Y2T5 361 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 EXOSC1Q9Y3B2 195 aaKnown RBP8.48□□□□□ -1.05
SS18-220ENST00000582092 PCDHGB6Q9Y5F9 930 aa8.48□□□□□ -1.05
SS18-220ENST00000582092 SEC16AO15027 2179 aa8.47□□□□□ -1.05
SS18-220ENST00000582092 TRAV27A0A087WT01 109 aa8.47□□□□□ -1.05
SS18-220ENST00000582092 NSG1A0A0A6YYJ2 146 aa8.47□□□□□ -1.05
SS18-220ENST00000582092 KDM4EB2RXH2 506 aaPredicted RBP8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms