RNA–Protein interactions for RNA: ENST00000581708.5

CDK5RAP3-222, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 4

Gene CDK5RAP3, Length 543 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-222	ENST00000581708	OSGIN1	Q9UJX0	560 aa		11.18	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	ZNF443	Q9Y2A4	671 aa	Predicted RBP	11.18	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	TMED7	Q9Y3B3	224 aa		11.18	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708		A0A1W2PPR1	153 aa		11.17	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	ZNF716	A6NP11	495 aa		11.17	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	EVPLL	A8MZ36	301 aa		11.17	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	C5orf58	C9J3I9	102 aa		11.17	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	AP3D1	O14617	1153 aa		11.17	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	SIAH2	O43255	324 aa		11.17	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	ADAM11	O75078	769 aa		11.17	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	PGM3	O95394	542 aa		11.17	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	FOSL1	P15407	271 aa		11.17	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	IL32	P24001	234 aa		11.17	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	CXCR1	P25024	350 aa		11.17	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	TACR3	P29371	465 aa		11.17	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	ACAA2	P42765	397 aa	Known RBP	11.17	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	POU4F3	Q15319	338 aa		11.17	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	ACKR1	Q16570	336 aa		11.17	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	GTDC1	Q4AE62	458 aa		11.17	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	PAQR6	Q6TCH4	344 aa		11.17	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	ZNF836	Q6ZNA1	936 aa		11.17	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	CXorf67	Q86X51	503 aa	Predicted RBP	11.17	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	KRT73	Q86Y46	540 aa		11.17	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	LRRC75A-AS1	Q8N1F1	130 aa		11.17	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	BHLHE22	Q8NFJ8	381 aa	Predicted RBP	11.17	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	AURKB	Q96GD4	344 aa	Predicted RBP	11.17	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	ARL5B	Q96KC2	179 aa		11.17	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	PARPBP	Q9NWS1	579 aa		11.17	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	TRBV5-3	A0A0A0MS03	114 aa		11.16	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	IGHV3-15	A0A0B4J1V0	119 aa		11.16	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	MBD3L2B	A0A1B0GVZ6	204 aa	Predicted RBP	11.16	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	PRORSD1P	A6NEY8	169 aa		11.16	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	ZNF814	B7Z6K7	855 aa		11.16	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	EDF1	O60869	148 aa	Known RBP	11.16	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	ADA	P00813	363 aa		11.16	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	GPI	P06744	558 aa		11.16	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	ARAF	P10398	606 aa		11.16	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	GPX2	P18283	190 aa		11.16	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	COX5A	P20674	150 aa		11.16	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	LOX	P28300	417 aa	Predicted RBP	11.16	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	PRKAR1B	P31321	381 aa		11.16	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	AGK	Q53H12	422 aa		11.16	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	ZNF311	Q5JNZ3	666 aa		11.16	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	SHE	Q5VZ18	495 aa		11.16	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	FBXW9	Q5XUX1	488 aa		11.16	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	ANKRD34A	Q69YU3	496 aa		11.16	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	REEP3	Q6NUK4	255 aa		11.16	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	ADAM5	Q6NVV9	412 aa		11.16	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	VRK2	Q86Y07	508 aa		11.16	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	ZNF100	Q8IYN0	542 aa		11.16	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	DPP10	Q8N608	796 aa		11.16	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	ZC3HAV1L	Q96H79	300 aa	Known RBP	11.16	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	TMEM204	Q9BSN7	226 aa		11.16	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	TMUB1	Q9BVT8	246 aa		11.16	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	SF3B5	Q9BWJ5	86 aa	Known RBP	11.16	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	TMEM38A	Q9H6F2	299 aa		11.16	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	C12orf10	Q9HB07	376 aa		11.16	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	RLIM	Q9NVW2	624 aa		11.16	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	SLC25A37	Q9NYZ2	338 aa		11.16	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	LEF1	Q9UJU2	399 aa	Predicted RBP	11.16	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	NF1	P21359	2839 aa		11.16	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	FREM1	Q5H8C1	2179 aa		11.16	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	TMEM72	A0PK05	275 aa		11.15	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708		A8MVM7	634 aa		11.15	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	NR5A2	O00482	541 aa		11.15	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	ARHGEF9	O43307	516 aa		11.15	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	MRPL33	O75394	65 aa	Known RBP	11.15	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	VAMP5	O95183	116 aa		11.15	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	CD99	P14209	185 aa		11.15	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	IDUA	P35475	653 aa		11.15	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	RIPPLY3	P57055	190 aa		11.15	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	OR2B6	P58173	313 aa		11.15	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	RBBP4	Q09028	425 aa		11.15	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	GCNT6	Q5T4J0	391 aa		11.15	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	DHRS4L2	Q6PKH6	230 aa		11.15	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	C5orf46	Q6UWT4	87 aa		11.15	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	C22orf34	Q6ZV56	151 aa		11.15	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	HMGN2P46	Q86SG4	172 aa		11.15	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	MSRB3	Q8IXL7	192 aa		11.15	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	CLIP4	Q8N3C7	705 aa		11.15	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	STK35	Q8TDR2	534 aa		11.15	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	APH1A	Q96BI3	265 aa		11.15	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	S100PBP	Q96BU1	408 aa		11.15	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	ZNF300	Q96RE9	604 aa	Predicted RBP	11.15	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	ZNF607	Q96SK3	696 aa		11.15	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	OR11A1	Q9GZK7	315 aa		11.15	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	ESRP2	Q9H6T0	727 aa	Known RBP	11.15	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	VAPA	Q9P0L0	249 aa		11.15	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	MALT1	Q9UDY8	824 aa		11.15	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	SLC9A8	Q9Y2E8	581 aa		11.15	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	NOSIP	Q9Y314	301 aa	Known RBP	11.15	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	NDUFAF1	Q9Y375	327 aa		11.15	□□□□□ -0.62
CDK5RAP3-222	ENST00000581708	NIPBL	Q6KC79	2804 aa	eCLIP	11.14	□□□□□ -0.63	6e-6	■■■□□ 16.7
CDK5RAP3-222	ENST00000581708	LIPT2	A6NK58	231 aa		11.14	□□□□□ -0.63
CDK5RAP3-222	ENST00000581708	SERPINB7	O75635	380 aa		11.14	□□□□□ -0.63
CDK5RAP3-222	ENST00000581708	NCF2	P19878	526 aa	Predicted RBP	11.14	□□□□□ -0.63
CDK5RAP3-222	ENST00000581708	SLC6A2	P23975	617 aa		11.14	□□□□□ -0.63
CDK5RAP3-222	ENST00000581708	HOXC12	P31275	282 aa		11.14	□□□□□ -0.63
CDK5RAP3-222	ENST00000581708	CDK6	Q00534	326 aa		11.14	□□□□□ -0.63
CDK5RAP3-222	ENST00000581708	SLC17A1	Q14916	467 aa		11.14	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms