RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 B3GALT5-AS1P59052 145 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 CRYZQ08257 329 aaKnown RBP9.7□□□□□ -0.86
SS18-213ENST00000579640 COX10Q12887 443 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 SLC10A1Q14973 349 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 KDM4DQ6B0I6 523 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 POMZP3Q6PJE2 187 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 CD300LDQ6UXZ3 194 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 PRICKLE2Q7Z3G6 844 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 ZER1Q7Z7L7 766 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 YRDCQ86U90 279 aaKnown RBP9.7□□□□□ -0.86
SS18-213ENST00000579640 PFN4Q8NHR9 129 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 MAGEE2Q8TD90 523 aaPredicted RBP9.7□□□□□ -0.86
SS18-213ENST00000579640 SFXN2Q96NB2 322 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 RDH12Q96NR8 316 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 NPAS1Q99742 590 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 SLC29A1Q99808 456 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 ZDHHC11Q9H8X9 412 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 MEPEQ9NQ76 525 aaPredicted RBP9.7□□□□□ -0.86
SS18-213ENST00000579640 POFUT2Q9Y2G5 429 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 ENO4A6NNW6 628 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 SHISA8B8ZZ34 492 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 KPNA4O00629 521 aaPredicted RBP9.7□□□□□ -0.86
SS18-213ENST00000579640 TFECO14948 347 aaPredicted RBP9.7□□□□□ -0.86
SS18-213ENST00000579640 PIP5K1CO60331 668 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 AHSA1O95433 338 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 GASTP01350 101 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 CDH2P19022 906 aaPredicted RBP9.7□□□□□ -0.86
SS18-213ENST00000579640 CCNA2P20248 432 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 IGFBP5P24593 272 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 GSSP48637 474 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 DAPP51397 102 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 RAD23AP54725 363 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 RAC1P63000 192 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 EGR4Q05215 589 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 TSPAN31Q12999 210 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 MFSD13AQ14CX5 517 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 SYT14P1Q58G82 188 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 WIPI1Q5MNZ9 446 aaPredicted RBP9.7□□□□□ -0.86
SS18-213ENST00000579640 C1orf140Q5VVS0 124 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 SLC6A19Q695T7 634 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 TMPRSS11FQ6ZWK6 438 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 OR5M1Q8NGP8 315 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 BPIFA2Q96DR5 249 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 SGTBQ96EQ0 304 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 CRELD1Q96HD1 420 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 MFRPQ9BY79 579 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 SMURF2Q9HAU4 748 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 PAPOLBQ9NRJ5 636 aaKnown RBP9.7□□□□□ -0.86
SS18-213ENST00000579640 KRT84Q9NSB2 600 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 LHX6Q9UPM6 363 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 HDGFL3Q9Y3E1 203 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 AP4B1Q9Y6B7 739 aa9.7□□□□□ -0.86
SS18-213ENST00000579640 KLF4O43474 513 aa9.69□□□□□ -0.86
SS18-213ENST00000579640 EFNA2O43921 213 aa9.69□□□□□ -0.86
SS18-213ENST00000579640 HCN1O60741 890 aa9.69□□□□□ -0.86
SS18-213ENST00000579640 MT-ATP6P00846 226 aa9.69□□□□□ -0.86
SS18-213ENST00000579640 CRYABP02511 175 aaKnown RBP9.69□□□□□ -0.86
SS18-213ENST00000579640 TCEA1P23193 301 aaKnown RBP9.69□□□□□ -0.86
SS18-213ENST00000579640 SLC9A3P48764 834 aa9.69□□□□□ -0.86
SS18-213ENST00000579640 GFRA1P56159 465 aa9.69□□□□□ -0.86
SS18-213ENST00000579640 LSM11P83369 360 aaKnown RBP eCLIP9.69□□□□□ -0.86
SS18-213ENST00000579640 PLEKHN1Q494U1 663 aaPredicted RBP9.69□□□□□ -0.86
SS18-213ENST00000579640 FAM69AQ5T7M9 428 aa9.69□□□□□ -0.86
SS18-213ENST00000579640 PARP8Q8N3A8 854 aa9.69□□□□□ -0.86
SS18-213ENST00000579640 GALNT4Q8N4A0 578 aa9.69□□□□□ -0.86
SS18-213ENST00000579640 LIPHQ8WWY8 451 aa9.69□□□□□ -0.86
SS18-213ENST00000579640 FAM46AQ96IP4 442 aaKnown RBP9.69□□□□□ -0.86
SS18-213ENST00000579640 UBL7Q96S82 380 aaPredicted RBP9.69□□□□□ -0.86
SS18-213ENST00000579640 NIPSNAP1Q9BPW8 284 aa9.69□□□□□ -0.86
SS18-213ENST00000579640 UCK2Q9BZX2 261 aa9.69□□□□□ -0.86
SS18-213ENST00000579640 ZNF71Q9NQZ8 489 aaPredicted RBP9.69□□□□□ -0.86
SS18-213ENST00000579640 C20orf141Q9NUB4 165 aa9.69□□□□□ -0.86
SS18-213ENST00000579640 SMPD3Q9NY59 655 aaPredicted RBP9.69□□□□□ -0.86
SS18-213ENST00000579640 TMEFF2Q9UIK5 374 aaPredicted RBP9.69□□□□□ -0.86
SS18-213ENST00000579640 NCKAP5O14513 1909 aa9.69□□□□□ -0.86
SS18-213ENST00000579640 DMXL2Q8TDJ6 3036 aa9.69□□□□□ -0.86
SS18-213ENST00000579640 CELSR3Q9NYQ7 3312 aa9.69□□□□□ -0.86
SS18-213ENST00000579640 EFCAB9A8MZ26 197 aa9.68□□□□□ -0.86
SS18-213ENST00000579640 OR7A10O76100 309 aa9.68□□□□□ -0.86
SS18-213ENST00000579640 WISP1O95388 367 aa9.68□□□□□ -0.86
SS18-213ENST00000579640 SAGP10523 405 aaPredicted RBP9.68□□□□□ -0.86
SS18-213ENST00000579640 TFPIP10646 304 aa9.68□□□□□ -0.86
SS18-213ENST00000579640 PEPDP12955 493 aa9.68□□□□□ -0.86
SS18-213ENST00000579640 IL11P20809 199 aa9.68□□□□□ -0.86
SS18-213ENST00000579640 PTNP21246 168 aa9.68□□□□□ -0.86
SS18-213ENST00000579640 IDUAP35475 653 aa9.68□□□□□ -0.86
SS18-213ENST00000579640 GPR4P46093 362 aa9.68□□□□□ -0.86
SS18-213ENST00000579640 FOXK1P85037 733 aa9.68□□□□□ -0.86
SS18-213ENST00000579640 PMP22Q01453 160 aa9.68□□□□□ -0.86
SS18-213ENST00000579640 ALDH6A1Q02252 535 aaKnown RBP9.68□□□□□ -0.86
SS18-213ENST00000579640 TAF11Q15544 211 aa9.68□□□□□ -0.86
SS18-213ENST00000579640 ZNF74Q16587 644 aa9.68□□□□□ -0.86
SS18-213ENST00000579640 ANKDD1AQ495B1 522 aa9.68□□□□□ -0.86
SS18-213ENST00000579640 NHSL2Q5HYW2 709 aa9.68□□□□□ -0.86
SS18-213ENST00000579640 RNFT1Q5M7Z0 435 aa9.68□□□□□ -0.86
SS18-213ENST00000579640 P3H2Q8IVL5 708 aa9.68□□□□□ -0.86
SS18-213ENST00000579640 MFSD8Q8NHS3 518 aa9.68□□□□□ -0.86
SS18-213ENST00000579640 SLC39A7Q92504 469 aa9.68□□□□□ -0.86
SS18-213ENST00000579640 GTPBP3Q969Y2 492 aaKnown RBP9.68□□□□□ -0.86
SS18-213ENST00000579640 KTI12Q96EK9 354 aaPredicted RBP9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms