RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 CLDN24A6NM45 220 aa9.25□□□□□ -0.93
SS18-210ENST00000578700 NPIPA7E9PJI5 369 aa9.25□□□□□ -0.93
SS18-210ENST00000578700 PRRG2O14669 202 aa9.25□□□□□ -0.93
SS18-210ENST00000578700 TO15178 435 aa9.25□□□□□ -0.93
SS18-210ENST00000578700 UTS2O95399 124 aa9.25□□□□□ -0.93
SS18-210ENST00000578700 ANGPTL1O95841 491 aa9.25□□□□□ -0.93
SS18-210ENST00000578700 NPIPA8P0DM63 369 aa9.25□□□□□ -0.93
SS18-210ENST00000578700 CD46P15529 392 aa9.25□□□□□ -0.93
SS18-210ENST00000578700 IDH2P48735 452 aaKnown RBP9.25□□□□□ -0.93
SS18-210ENST00000578700 NR0B1P51843 470 aaKnown RBP9.25□□□□□ -0.93
SS18-210ENST00000578700 EFNA3P52797 238 aa9.25□□□□□ -0.93
SS18-210ENST00000578700 CRISP1P54107 249 aa9.25□□□□□ -0.93
SS18-210ENST00000578700 GABARAPL2P60520 117 aa9.25□□□□□ -0.93
SS18-210ENST00000578700 CD47Q08722 323 aa9.25□□□□□ -0.93
SS18-210ENST00000578700 EBPQ15125 230 aaKnown RBP9.25□□□□□ -0.93
SS18-210ENST00000578700 OR1Q1Q15612 314 aa9.25□□□□□ -0.93
SS18-210ENST00000578700 MEP1AQ16819 746 aa9.25□□□□□ -0.93
SS18-210ENST00000578700 C6orf141Q5SZD1 244 aa9.25□□□□□ -0.93
SS18-210ENST00000578700 ZNF770Q6IQ21 691 aaPredicted RBP9.25□□□□□ -0.93
SS18-210ENST00000578700 PGBD2Q6P3X8 592 aa9.25□□□□□ -0.93
SS18-210ENST00000578700 PAPD4Q6PIY7 484 aaKnown RBP9.25□□□□□ -0.93
SS18-210ENST00000578700 TMEM205Q6UW68 189 aa9.25□□□□□ -0.93
SS18-210ENST00000578700 CASP12Q6UXS9 341 aa9.25□□□□□ -0.93
SS18-210ENST00000578700 CD300LDQ6UXZ3 194 aa9.25□□□□□ -0.93
SS18-210ENST00000578700 Q6ZPB1 254 aaPredicted RBP9.25□□□□□ -0.93
SS18-210ENST00000578700 MBOAT2Q6ZWT7 520 aa9.25□□□□□ -0.93
SS18-210ENST00000578700 CPEB2Q7Z5Q1 589 aaKnown RBP9.25□□□□□ -0.93
SS18-210ENST00000578700 COMTD1Q86VU5 262 aa9.25□□□□□ -0.93
SS18-210ENST00000578700 DOLPP1Q86YN1 238 aa9.25□□□□□ -0.93
SS18-210ENST00000578700 RNF113BQ8IZP6 322 aaKnown RBP9.25□□□□□ -0.93
SS18-210ENST00000578700 GHDCQ8N2G8 530 aa9.25□□□□□ -0.93
SS18-210ENST00000578700 FAM98AQ8NCA5 519 aaKnown RBP9.25□□□□□ -0.93
SS18-210ENST00000578700 FAM81AQ8TBF8 368 aa9.25□□□□□ -0.93
SS18-210ENST00000578700 TP53INP1Q96A56 240 aa9.25□□□□□ -0.93
SS18-210ENST00000578700 EFHD2Q96C19 240 aaPredicted RBP9.25□□□□□ -0.93
SS18-210ENST00000578700 MPP4Q96JB8 637 aa9.25□□□□□ -0.93
SS18-210ENST00000578700 NIPSNAP1Q9BPW8 284 aa9.25□□□□□ -0.93
SS18-210ENST00000578700 ENKD1Q9H0I2 346 aa9.25□□□□□ -0.93
SS18-210ENST00000578700 NXF5Q9H1B4 397 aaKnown RBP9.25□□□□□ -0.93
SS18-210ENST00000578700 CCNB1IP1Q9NPC3 277 aa9.25□□□□□ -0.93
SS18-210ENST00000578700 SLC7A7Q9UM01 511 aa9.25□□□□□ -0.93
SS18-210ENST00000578700 TMEM5Q9Y2B1 443 aa9.25□□□□□ -0.93
SS18-210ENST00000578700 HCFC1P51610 2035 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 NUP214P35658 2090 aaPredicted RBP9.24□□□□□ -0.93
SS18-210ENST00000578700 SMIM31A0A1B0GVY4 71 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 A0A1W2PQ72 361 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 FAM90A27PA6NNH2 459 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 MAN1A2O60476 641 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 SMNDC1O75940 238 aaKnown RBP eCLIP9.24□□□□□ -0.93
SS18-210ENST00000578700 IGKV1D-16P01601 117 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 CLPSP04118 112 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 CCDC159P0C7I6 412 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 GKN3PP0CG01 181 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 UBL4AP11441 157 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 TBXA2RP21731 343 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 ELK4P28324 431 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 POLR2IP36954 125 aaKnown RBP9.24□□□□□ -0.93
SS18-210ENST00000578700 ADH7P40394 386 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 TMED10P49755 219 aaKnown RBP9.24□□□□□ -0.93
SS18-210ENST00000578700 HLCSP50747 726 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 GPR143P51810 404 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 ZNF136P52737 540 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 PNLIPRP2P54317 469 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 CXCR4P61073 352 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 ISL1P61371 349 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 RNF4P78317 190 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 HOXC5Q00444 222 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 EFR3AQ14156 821 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 SEC23BQ15437 767 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 C1orf94Q6P1W5 598 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 ULK3Q6PHR2 472 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 KLHL17Q6TDP4 642 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 C9orf40Q8IXQ3 194 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 TMCO5AQ8N6Q1 288 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 ZNF321PQ8N8H1 164 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 TMEM178AQ8NBL3 297 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 BPIFB6Q8NFQ5 453 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 OR8K3Q8NH51 312 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 TEX47Q8TBZ9 253 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 CNOT9Q92600 299 aaKnown RBP9.24□□□□□ -0.93
SS18-210ENST00000578700 NRGNQ92686 78 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 ADIPOR1Q96A54 375 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 Q96MT0 163 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 ADOQ96SZ5 270 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 WFDC6Q9BQY6 131 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 FUZQ9BT04 418 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 TBL1XR1Q9BZK7 514 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 CDCP1Q9H5V8 836 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 HHATLQ9HCP6 504 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 MAN2C1Q9NTJ4 1040 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 CLN6Q9NWW5 311 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 DNAJB12Q9NXW2 375 aaKnown RBP9.24□□□□□ -0.93
SS18-210ENST00000578700 KCNE5Q9UJ90 142 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 MED31Q9Y3C7 131 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 CHST2Q9Y4C5 530 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 PCDHGB5Q9Y5G0 923 aa9.24□□□□□ -0.93
SS18-210ENST00000578700 FLNAP21333 2647 aaKnown RBP9.24□□□□□ -0.93
SS18-210ENST00000578700 A0A087WUU8 490 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 TRBV11-1A0A0K0K1C0 115 aa9.23□□□□□ -0.93
SS18-210ENST00000578700 CENPVL1A0A0U1RR11 272 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms