RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 PRSS44E7EML9 344 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 TEX46H3BTG2 121 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 CASKO14936 926 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 EPHB6O15197 1021 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 SIGLEC5O15389 551 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 SYNGR3O43761 229 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 EFNA2O43921 213 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 CIDEAO60543 219 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 PROP1O75360 226 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 TRIM3O75382 744 aaPredicted RBP4.98□□□□□ -1.61
VPS53-219ENST00000576019 UMODP07911 640 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 ETS2P15036 469 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 CA6P23280 308 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 CD1BP29016 333 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 CASP14P31944 242 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 SLC1A4P43007 532 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 LEPRP48357 1165 aaKnown RBP4.98□□□□□ -1.61
VPS53-219ENST00000576019 FHITP49789 147 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 ATP1B3P54709 279 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 RPL27P61353 136 aaKnown RBP4.98□□□□□ -1.61
VPS53-219ENST00000576019 ASPHQ12797 758 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 ENPP2Q13822 863 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 TGFBIQ15582 683 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 ZNF260Q3ZCT1 412 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 C6orf226Q5I0X4 101 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 WLSQ5T9L3 541 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 AGAP7PQ5VUJ5 663 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 TMEM207Q6UWW9 146 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 TMEM107Q6UX40 140 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 DHDDSQ86SQ9 333 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 SFR1Q86XK3 245 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 ZNF441Q8N8Z8 693 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 OR4F17Q8NGA8 305 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 OR51G2Q8NGK0 314 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 OR4F5Q8NH21 305 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 OR1F12Q8NHA8 337 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 CCDC26Q8TAB7 109 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 DDB2Q92466 427 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 MYLPFQ96A32 169 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 C18orf25Q96B23 403 aaPredicted RBP4.98□□□□□ -1.61
VPS53-219ENST00000576019 C10orf35Q96D05 121 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 TM4SF19Q96DZ7 209 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 AGAP4Q96P64 663 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 OR4F4Q96R69 305 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 CCT8L2Q96SF2 557 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 SMR3AQ99954 134 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 CENPKQ9BS16 269 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 RHNO1Q9BSD3 238 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 C1QTNF3Q9BXJ4 246 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 TDRD1Q9BXT4 1180 aaKnown RBP4.98□□□□□ -1.61
VPS53-219ENST00000576019 LRRN3Q9H3W5 708 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 DCTPP1Q9H773 170 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 POLD4Q9HCU8 107 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 UBE2TQ9NPD8 197 aaPredicted RBP4.98□□□□□ -1.61
VPS53-219ENST00000576019 LZTFL1Q9NQ48 299 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 CHRAC1Q9NRG0 131 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 AHSPQ9NZD4 102 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 TBC1D24Q9ULP9 559 aa4.98□□□□□ -1.61
VPS53-219ENST00000576019 NUP210Q8TEM1 1887 aaPredicted RBP4.98□□□□□ -1.61
VPS53-219ENST00000576019 ABCA4P78363 2273 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 IGLV9-49A0A0B4J1Y8 123 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 TRAV25A0A0B4J276 109 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 FBLL1A6NHQ2 334 aaKnown RBP4.97□□□□□ -1.61
VPS53-219ENST00000576019 ATP6V0E1O15342 81 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 SRPX2O60687 465 aaPredicted RBP4.97□□□□□ -1.61
VPS53-219ENST00000576019 B3GAT3O94766 335 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 SORBS2O94875 1100 aaKnown RBP4.97□□□□□ -1.61
VPS53-219ENST00000576019 STAMBPO95630 424 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 CST1P01037 141 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 NR3C1P04150 777 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 IGF1P05019 195 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 CRYGBP07316 175 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 ALOX5P09917 674 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 CCDC172P0C7W6 258 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 MARK3P27448 753 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 PCYT1AP49585 367 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 BCAP31P51572 246 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 CDH6P55285 790 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 C21orf59P57076 290 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 Q0VFX4 171 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 MAB21L1Q13394 359 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 KRT71Q3SY84 523 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 C14orf28Q4W4Y0 310 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 FAM76BQ5HYJ3 339 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 SPANXN4Q5MJ08 99 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 C1orf189Q5VU69 101 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 LANCL3Q6ZV70 420 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 RANBP3LQ86VV4 465 aaPredicted RBP4.97□□□□□ -1.61
VPS53-219ENST00000576019 DND1Q8IYX4 353 aaKnown RBP4.97□□□□□ -1.61
VPS53-219ENST00000576019 GTPBP8Q8N3Z3 284 aaPredicted RBP4.97□□□□□ -1.61
VPS53-219ENST00000576019 FGFRL1Q8N441 504 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 CLDN19Q8N6F1 224 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 MFSD9Q8NBP5 474 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 SDR9C7Q8NEX9 313 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 C8orf46Q8TAG6 207 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 TSEN15Q8WW01 171 aaKnown RBP4.97□□□□□ -1.61
VPS53-219ENST00000576019 LHX4Q969G2 390 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 TSNARE1Q96NA8 513 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 SLC38A2Q96QD8 506 aa4.97□□□□□ -1.61
VPS53-219ENST00000576019 MTMR9Q96QG7 549 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms