RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 OR4F21O95013 312 aa15.5■□□□□ 0.07
CLK3-227ENST00000570296 IGKV3-15P01624 115 aa15.5■□□□□ 0.07
CLK3-227ENST00000570296 GSNP06396 782 aa15.5■□□□□ 0.07
CLK3-227ENST00000570296 TFPIP10646 304 aa15.5■□□□□ 0.07
CLK3-227ENST00000570296 RBMXP38159 391 aaKnown RBP15.5■□□□□ 0.07
CLK3-227ENST00000570296 CCR4P51679 360 aa15.5■□□□□ 0.07
CLK3-227ENST00000570296 MERTKQ12866 999 aa15.5■□□□□ 0.07
CLK3-227ENST00000570296 EXOSC6Q5RKV6 272 aaKnown RBP15.5■□□□□ 0.07
CLK3-227ENST00000570296 DDX59Q5T1V6 619 aaKnown RBP eCLIP15.5■□□□□ 0.07
CLK3-227ENST00000570296 Q6ZPA2 131 aa15.5■□□□□ 0.07
CLK3-227ENST00000570296 C3orf62Q6ZUJ4 267 aa15.5■□□□□ 0.07
CLK3-227ENST00000570296 RPS27LQ71UM5 84 aaKnown RBP15.5■□□□□ 0.07
CLK3-227ENST00000570296 ADGRG3Q86Y34 549 aa15.5■□□□□ 0.07
CLK3-227ENST00000570296 OR1K1Q8NGR3 316 aa15.5■□□□□ 0.07
CLK3-227ENST00000570296 HDGFL3Q9Y3E1 203 aa15.5■□□□□ 0.07
CLK3-227ENST00000570296 CMAHPQ9Y471 501 aa15.5■□□□□ 0.07
CLK3-227ENST00000570296 A0A096LPK6 155 aa15.49■□□□□ 0.07
CLK3-227ENST00000570296 OR6C65A6NJZ3 312 aa15.49■□□□□ 0.07
CLK3-227ENST00000570296 RP2O75695 350 aa15.49■□□□□ 0.07
CLK3-227ENST00000570296 GSTA2P09210 222 aa15.49■□□□□ 0.07
CLK3-227ENST00000570296 RBP1P09455 135 aa15.49■□□□□ 0.07
CLK3-227ENST00000570296 ASMTP46597 345 aa15.49■□□□□ 0.07
CLK3-227ENST00000570296 CDH13P55290 713 aa15.49■□□□□ 0.07
CLK3-227ENST00000570296 SESN3P58005 492 aa15.49■□□□□ 0.07
CLK3-227ENST00000570296 H3F3AP84243 136 aa15.49■□□□□ 0.07
CLK3-227ENST00000570296 SZRD1Q7Z422 152 aa15.49■□□□□ 0.07
CLK3-227ENST00000570296 TREML1Q86YW5 311 aa15.49■□□□□ 0.07
CLK3-227ENST00000570296 MAGEE2Q8TD90 523 aaPredicted RBP15.49■□□□□ 0.07
CLK3-227ENST00000570296 TMEM234Q8WY98 164 aa15.49■□□□□ 0.07
CLK3-227ENST00000570296 TAF15Q92804 592 aaKnown RBP eCLIP15.49■□□□□ 0.07
CLK3-227ENST00000570296 TMEM45BQ96B21 275 aa15.49■□□□□ 0.07
CLK3-227ENST00000570296 RBM4BQ9BQ04 359 aaKnown RBP15.49■□□□□ 0.07
CLK3-227ENST00000570296 DUSP22Q9NRW4 184 aa15.49■□□□□ 0.07
CLK3-227ENST00000570296 GIN1Q9NXP7 522 aa15.49■□□□□ 0.07
CLK3-227ENST00000570296 TESQ9UGI8 421 aaKnown RBP15.49■□□□□ 0.07
CLK3-227ENST00000570296 DTNAQ9Y4J8 743 aa15.49■□□□□ 0.07
CLK3-227ENST00000570296 BIRC6Q9NR09 4857 aa15.49■□□□□ 0.07
CLK3-227ENST00000570296 IGHV2OR16-5A0A0B4J2B6 119 aa15.48■□□□□ 0.07
CLK3-227ENST00000570296 CCDC151A5D8V7 595 aa15.48■□□□□ 0.07
CLK3-227ENST00000570296 UBL4AP11441 157 aa15.48■□□□□ 0.07
CLK3-227ENST00000570296 TSPAN8P19075 237 aa15.48■□□□□ 0.07
CLK3-227ENST00000570296 FKBP2P26885 142 aaKnown RBP15.48■□□□□ 0.07
CLK3-227ENST00000570296 ATP12AP54707 1039 aa15.48■□□□□ 0.07
CLK3-227ENST00000570296 SNTB2Q13425 540 aaKnown RBP15.48■□□□□ 0.07
CLK3-227ENST00000570296 NAB1Q13506 487 aa15.48■□□□□ 0.07
CLK3-227ENST00000570296 RASA2Q15283 850 aa15.48■□□□□ 0.07
CLK3-227ENST00000570296 SLC9A3R2Q15599 337 aa15.48■□□□□ 0.07
CLK3-227ENST00000570296 BRICD5Q6PL45 260 aa15.48■□□□□ 0.07
CLK3-227ENST00000570296 JADE3Q92613 823 aa15.48■□□□□ 0.07
CLK3-227ENST00000570296 BCL2L2Q92843 193 aaPredicted RBP15.48■□□□□ 0.07
CLK3-227ENST00000570296 C16orf58Q96GQ5 468 aa15.48■□□□□ 0.07
CLK3-227ENST00000570296 STACQ99469 402 aa15.48■□□□□ 0.07
CLK3-227ENST00000570296 C1QTNF3Q9BXJ4 246 aa15.48■□□□□ 0.07
CLK3-227ENST00000570296 ACER3Q9NUN7 267 aa15.48■□□□□ 0.07
CLK3-227ENST00000570296 PLEK2Q9NYT0 353 aa15.48■□□□□ 0.07
CLK3-227ENST00000570296 NUP50Q9UKX7 468 aa15.48■□□□□ 0.07
CLK3-227ENST00000570296 NPIPB9F8W1W9 429 aa15.47■□□□□ 0.07
CLK3-227ENST00000570296 PDPK1O15530 556 aa15.47■□□□□ 0.07
CLK3-227ENST00000570296 HOXB1P14653 301 aaPredicted RBP15.47■□□□□ 0.07
CLK3-227ENST00000570296 CLK1P49759 484 aaKnown RBP15.47■□□□□ 0.07
CLK3-227ENST00000570296 DR1Q01658 176 aa15.47■□□□□ 0.07
CLK3-227ENST00000570296 BTKQ06187 659 aa15.47■□□□□ 0.07
CLK3-227ENST00000570296 DAG1Q14118 895 aa15.47■□□□□ 0.07
CLK3-227ENST00000570296 SLC17A1Q14916 467 aa15.47■□□□□ 0.07
CLK3-227ENST00000570296 ZNF362Q5T0B9 420 aaPredicted RBP15.47■□□□□ 0.07
CLK3-227ENST00000570296 MROH9Q5TGP6 573 aa15.47■□□□□ 0.07
CLK3-227ENST00000570296 ZFP28Q8NHY6 868 aa15.47■□□□□ 0.07
CLK3-227ENST00000570296 POP5Q969H6 163 aaKnown RBP15.47■□□□□ 0.07
CLK3-227ENST00000570296 OTUB1Q96FW1 271 aaPredicted RBP15.47■□□□□ 0.07
CLK3-227ENST00000570296 THUMPD3Q9BV44 507 aaKnown RBP15.47■□□□□ 0.07
CLK3-227ENST00000570296 MRPL37Q9BZE1 423 aaKnown RBP15.47■□□□□ 0.07
CLK3-227ENST00000570296 BEX1Q9HBH7 125 aa15.47■□□□□ 0.07
CLK3-227ENST00000570296 GRHL1Q9NZI5 618 aa15.47■□□□□ 0.07
CLK3-227ENST00000570296 ZNF69Q9UC07 566 aa15.47■□□□□ 0.07
CLK3-227ENST00000570296 CHRNA9Q9UGM1 479 aa15.47■□□□□ 0.07
CLK3-227ENST00000570296 MID2Q9UJV3 735 aa15.47■□□□□ 0.07
CLK3-227ENST00000570296 TRAPPC4Q9Y296 219 aa15.47■□□□□ 0.07
CLK3-227ENST00000570296 GOLGA6L6A8MZA4 724 aa15.46■□□□□ 0.07
CLK3-227ENST00000570296 ANKRD28O15084 1053 aa15.46■□□□□ 0.07
CLK3-227ENST00000570296 EIF3HO15372 352 aaKnown RBP eCLIP15.46■□□□□ 0.07
CLK3-227ENST00000570296 EIF1BO60739 113 aaKnown RBP15.46■□□□□ 0.07
CLK3-227ENST00000570296 LGI1O95970 557 aa15.46■□□□□ 0.07
CLK3-227ENST00000570296 IGHV2-5P01817 119 aa15.46■□□□□ 0.07
CLK3-227ENST00000570296 TCN1P20061 433 aaPredicted RBP15.46■□□□□ 0.07
CLK3-227ENST00000570296 OMGP23515 440 aa15.46■□□□□ 0.07
CLK3-227ENST00000570296 APOBEC1P41238 236 aaKnown RBP15.46■□□□□ 0.07
CLK3-227ENST00000570296 TUBA1BP68363 451 aa15.46■□□□□ 0.07
CLK3-227ENST00000570296 TUBA4AP68366 448 aa15.46■□□□□ 0.07
CLK3-227ENST00000570296 ARMCX4Q5H9R4 360 aa15.46■□□□□ 0.07
CLK3-227ENST00000570296 CDC73Q6P1J9 531 aa15.46■□□□□ 0.07
CLK3-227ENST00000570296 TUBA1AQ71U36 451 aa15.46■□□□□ 0.07
CLK3-227ENST00000570296 SPATC1Q76KD6 591 aa15.46■□□□□ 0.07
CLK3-227ENST00000570296 MYPOPQ86VE0 399 aaPredicted RBP15.46■□□□□ 0.07
CLK3-227ENST00000570296 ZNF614Q8N883 585 aa15.46■□□□□ 0.07
CLK3-227ENST00000570296 IL17RDQ8NFM7 739 aa15.46■□□□□ 0.07
CLK3-227ENST00000570296 ANP32BQ92688 251 aaKnown RBP15.46■□□□□ 0.07
CLK3-227ENST00000570296 CDS1Q92903 461 aa15.46■□□□□ 0.07
CLK3-227ENST00000570296 ZNF48Q96MX3 618 aaPredicted RBP15.46■□□□□ 0.07
CLK3-227ENST00000570296 OSBPL9Q96SU4 736 aa15.46■□□□□ 0.07
CLK3-227ENST00000570296 TRIM31Q9BZY9 425 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms