RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 SYNPRQ8TBG9 265 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 NR4A3Q92570 626 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 RSPRY1Q96DX4 576 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 S100A16Q96FQ6 103 aaKnown RBP13.38□□□□□ -0.27
VPS35-210ENST00000568784 SOSTQ9BQB4 213 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 ERVMER34-1Q9H9K5 563 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 CMC2Q9NRP2 79 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 PFDN2Q9UHV9 154 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 COPS3Q9UNS2 423 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 A0A1B0GVI7 797 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 SPDEFO95238 335 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 CISD3P0C7P0 127 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 HIST1H1CP16403 213 aaKnown RBP13.38□□□□□ -0.27
VPS35-210ENST00000568784 DCTDP32321 178 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 SIRPAP78324 504 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 EFNB1P98172 346 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 CST6Q15828 149 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 C3P1Q6ZMU1 363 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 ZNF765Q7L2R6 523 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 PRSS41Q7RTY9 318 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 FAM220AQ7Z4H9 259 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 KIAA0907Q7Z7F0 614 aaPredicted RBP13.38□□□□□ -0.27
VPS35-210ENST00000568784 SLC35F2Q8IXU6 374 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 ZNF619Q8N2I2 560 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 GSX2Q9BZM3 304 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 KCMF1Q9P0J7 381 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 COPZ2Q9P299 210 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 SNRNP200O75643 2136 aaKnown RBP13.38□□□□□ -0.27
VPS35-210ENST00000568784 TCF20Q9UGU0 1960 aaKnown RBP13.38□□□□□ -0.27
VPS35-210ENST00000568784 OR2W5A6NFC9 320 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 H7C1C5 153 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 TBX19O60806 448 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 MPC2O95563 127 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 DBIP07108 87 aaKnown RBP13.38□□□□□ -0.27
VPS35-210ENST00000568784 OR8G3PP0DMU2 310 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 NRG3P56975 720 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 LCN6P62502 163 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 SNRPNP63162 240 aaKnown RBP13.38□□□□□ -0.27
VPS35-210ENST00000568784 PDGFRLQ15198 375 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 GARNL3Q5VVW2 1013 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 OR5M10Q6IEU7 315 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 BTN2A1Q7KYR7 527 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 ZNF676Q8N7Q3 588 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 ZNF485Q8NCK3 441 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 ZDHHC1Q8WTX9 485 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 SMARCD2Q92925 531 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 FKRPQ9H9S5 495 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 GPN1Q9HCN4 374 aaPredicted RBP13.38□□□□□ -0.27
VPS35-210ENST00000568784 COLEC10Q9Y6Z7 277 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 A0A1B0GWA3 101 aa13.37□□□□□ -0.27
VPS35-210ENST00000568784 PLATP00750 562 aa13.37□□□□□ -0.27
VPS35-210ENST00000568784 IFNA16P05015 189 aa13.37□□□□□ -0.27
VPS35-210ENST00000568784 NUP62P37198 522 aaPredicted RBP13.37□□□□□ -0.27
VPS35-210ENST00000568784 AP3S2P59780 193 aa13.37□□□□□ -0.27
VPS35-210ENST00000568784 HTR4Q13639 388 aa13.37□□□□□ -0.27
VPS35-210ENST00000568784 RPE65Q16518 533 aa13.37□□□□□ -0.27
VPS35-210ENST00000568784 SFRP5Q5T4F7 317 aa13.37□□□□□ -0.27
VPS35-210ENST00000568784 IDO2Q6ZQW0 420 aa13.37□□□□□ -0.27
VPS35-210ENST00000568784 CCL4L1Q8NHW4 92 aa13.37□□□□□ -0.27
VPS35-210ENST00000568784 RASD2Q96D21 266 aa13.37□□□□□ -0.27
VPS35-210ENST00000568784 ELF5Q9UKW6 265 aaPredicted RBP13.37□□□□□ -0.27
VPS35-210ENST00000568784 BAIAP2Q9UQB8 552 aa13.37□□□□□ -0.27
VPS35-210ENST00000568784 CREBL2O60519 120 aaPredicted RBP13.37□□□□□ -0.27
VPS35-210ENST00000568784 EFEMP2O95967 443 aa13.37□□□□□ -0.27
VPS35-210ENST00000568784 DEFA5Q01523 94 aa13.37□□□□□ -0.27
VPS35-210ENST00000568784 ZNF85Q03923 595 aa13.37□□□□□ -0.27
VPS35-210ENST00000568784 SLC36A2Q495M3 483 aa13.37□□□□□ -0.27
VPS35-210ENST00000568784 METTL27Q8N6F8 245 aaPredicted RBP13.37□□□□□ -0.27
VPS35-210ENST00000568784 ZBTB44Q8NCP5 570 aa13.37□□□□□ -0.27
VPS35-210ENST00000568784 RBPMSQ93062 196 aaKnown RBP13.37□□□□□ -0.27
VPS35-210ENST00000568784 ADAD1Q96M93 576 aaKnown RBP13.37□□□□□ -0.27
VPS35-210ENST00000568784 RAB11FIP5Q9BXF6 653 aa13.37□□□□□ -0.27
VPS35-210ENST00000568784 MS4A7Q9GZW8 240 aaPredicted RBP13.37□□□□□ -0.27
VPS35-210ENST00000568784 C11orf49Q9H6J7 331 aa13.37□□□□□ -0.27
VPS35-210ENST00000568784 LIN7BQ9HAP6 207 aa13.37□□□□□ -0.27
VPS35-210ENST00000568784 IL21RQ9HBE5 538 aa13.37□□□□□ -0.27
VPS35-210ENST00000568784 PRDM9Q9NQV7 894 aa13.37□□□□□ -0.27
VPS35-210ENST00000568784 AKAP7Q9P0M2 348 aaPredicted RBP13.37□□□□□ -0.27
VPS35-210ENST00000568784 KLHL9Q9P2J3 617 aa13.37□□□□□ -0.27
VPS35-210ENST00000568784 FAM25EA8MYX2 175 aa13.37□□□□□ -0.27
VPS35-210ENST00000568784 LIPCP11150 499 aa13.37□□□□□ -0.27
VPS35-210ENST00000568784 BTCP35070 178 aa13.37□□□□□ -0.27
VPS35-210ENST00000568784 VASPP50552 380 aaPredicted RBP13.37□□□□□ -0.27
VPS35-210ENST00000568784 PUDPQ08623 228 aa13.37□□□□□ -0.27
VPS35-210ENST00000568784 KCNAB1Q14722 419 aa13.37□□□□□ -0.27
VPS35-210ENST00000568784 ZNHIT3Q15649 155 aaPredicted RBP13.37□□□□□ -0.27
VPS35-210ENST00000568784 ZNF542PQ5EBM4 170 aa13.37□□□□□ -0.27
VPS35-210ENST00000568784 NHLRC1Q6VVB1 395 aa13.37□□□□□ -0.27
VPS35-210ENST00000568784 ZAR1Q86SH2 424 aa13.37□□□□□ -0.27
VPS35-210ENST00000568784 OR2L8Q8NGY9 312 aa13.37□□□□□ -0.27
VPS35-210ENST00000568784 NKD1Q969G9 470 aa13.37□□□□□ -0.27
VPS35-210ENST00000568784 LYARQ9NX58 379 aaKnown RBP13.37□□□□□ -0.27
VPS35-210ENST00000568784 NUP50Q9UKX7 468 aa13.37□□□□□ -0.27
VPS35-210ENST00000568784 CCL5P13501 91 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 ITGB8P26012 769 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 CAMK2DQ13557 499 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 THEM6Q8WUY1 208 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 PELI1Q96FA3 418 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 ADGRL4Q9HBW9 690 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 HRASLSQ9HDD0 168 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms