RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 EMC3Q9P0I2 261 aa11.94□□□□□ -0.5
CLK3-213ENST00000563842 RPS6KB2Q9UBS0 482 aa11.94□□□□□ -0.5
CLK3-213ENST00000563842 CAPN7Q9Y6W3 813 aa11.94□□□□□ -0.5
CLK3-213ENST00000563842 TACC2O95359 2948 aa11.93□□□□□ -0.5
CLK3-213ENST00000563842 IGHV3-15A0A0B4J1V0 119 aa11.93□□□□□ -0.5
CLK3-213ENST00000563842 TMEM72A0PK05 275 aa11.93□□□□□ -0.5
CLK3-213ENST00000563842 FAM221AA4D161 298 aa11.93□□□□□ -0.5
CLK3-213ENST00000563842 ZNF724A8MTY0 619 aa11.93□□□□□ -0.5
CLK3-213ENST00000563842 GPR171O14626 319 aa11.93□□□□□ -0.5
CLK3-213ENST00000563842 SMAD9O15198 467 aaKnown RBP11.93□□□□□ -0.5
CLK3-213ENST00000563842 CCDC22O60826 627 aa11.93□□□□□ -0.5
CLK3-213ENST00000563842 FESP07332 822 aa11.93□□□□□ -0.5
CLK3-213ENST00000563842 CD1EP15812 388 aa11.93□□□□□ -0.5
CLK3-213ENST00000563842 PPP3CBP16298 524 aa11.93□□□□□ -0.5
CLK3-213ENST00000563842 CCNA2P20248 432 aa11.93□□□□□ -0.5
CLK3-213ENST00000563842 UGT2B10P36537 528 aa11.93□□□□□ -0.5
CLK3-213ENST00000563842 OR2B6P58173 313 aa11.93□□□□□ -0.5
CLK3-213ENST00000563842 PDK3Q15120 406 aa11.93□□□□□ -0.5
CLK3-213ENST00000563842 EXOC3L2Q2M3D2 409 aa11.93□□□□□ -0.5
CLK3-213ENST00000563842 INTS11Q5TA45 600 aaKnown RBP11.93□□□□□ -0.5
CLK3-213ENST00000563842 SERPINA11Q86U17 422 aa11.93□□□□□ -0.5
CLK3-213ENST00000563842 ARL5BQ96KC2 179 aa11.93□□□□□ -0.5
CLK3-213ENST00000563842 PSD2Q9BQI7 771 aa11.93□□□□□ -0.5
CLK3-213ENST00000563842 GPATCH1Q9BRR8 931 aaKnown RBP11.93□□□□□ -0.5
CLK3-213ENST00000563842 MED18Q9BUE0 208 aa11.93□□□□□ -0.5
CLK3-213ENST00000563842 HDHD5Q9BXW7 423 aa11.93□□□□□ -0.5
CLK3-213ENST00000563842 KLHL4Q9C0H6 718 aa11.93□□□□□ -0.5
CLK3-213ENST00000563842 OR10A4Q9H209 315 aa11.93□□□□□ -0.5
CLK3-213ENST00000563842 A8MVM7 634 aa11.92□□□□□ -0.5
CLK3-213ENST00000563842 MRASO14807 208 aa11.92□□□□□ -0.5
CLK3-213ENST00000563842 GPIP06744 558 aa11.92□□□□□ -0.5
CLK3-213ENST00000563842 IDUAP35475 653 aa11.92□□□□□ -0.5
CLK3-213ENST00000563842 MTPNP58546 118 aa11.92□□□□□ -0.5
CLK3-213ENST00000563842 KRTAP10-9P60411 292 aa11.92□□□□□ -0.5
CLK3-213ENST00000563842 NCALDP61601 193 aa11.92□□□□□ -0.5
CLK3-213ENST00000563842 SF3A3Q12874 501 aaKnown RBP eCLIP11.92□□□□□ -0.52e-6■■■■■ 54.1
CLK3-213ENST00000563842 ADRM1Q16186 407 aa11.92□□□□□ -0.5
CLK3-213ENST00000563842 GALNT5Q7Z7M9 940 aa11.92□□□□□ -0.5
CLK3-213ENST00000563842 PATL1Q86TB9 770 aaKnown RBP11.92□□□□□ -0.5
CLK3-213ENST00000563842 ARMC8Q8IUR7 673 aa11.92□□□□□ -0.5
CLK3-213ENST00000563842 C10orf111Q8N326 155 aa11.92□□□□□ -0.5
CLK3-213ENST00000563842 OR8J3Q8NGG0 315 aa11.92□□□□□ -0.5
CLK3-213ENST00000563842 C10orf82Q8WW14 230 aa11.92□□□□□ -0.5
CLK3-213ENST00000563842 LRRC58Q96CX6 371 aa11.92□□□□□ -0.5
CLK3-213ENST00000563842 USB1Q9BQ65 265 aaKnown RBP11.92□□□□□ -0.5
CLK3-213ENST00000563842 ECSITQ9BQ95 431 aa11.92□□□□□ -0.5
CLK3-213ENST00000563842 TAPBPLQ9BX59 468 aa11.92□□□□□ -0.5
CLK3-213ENST00000563842 TRIM2Q9C040 744 aa11.92□□□□□ -0.5
CLK3-213ENST00000563842 OR11A1Q9GZK7 315 aa11.92□□□□□ -0.5
CLK3-213ENST00000563842 NSRP1Q9H0G5 558 aaKnown RBP11.92□□□□□ -0.5
CLK3-213ENST00000563842 CLEC4MQ9H2X3 399 aaPredicted RBP11.92□□□□□ -0.5
CLK3-213ENST00000563842 KAT8Q9H7Z6 458 aaKnown RBP11.92□□□□□ -0.5
CLK3-213ENST00000563842 C12orf10Q9HB07 376 aa11.92□□□□□ -0.5
CLK3-213ENST00000563842 SELENONQ9NZV5 590 aa11.92□□□□□ -0.5
CLK3-213ENST00000563842 GPR52Q9Y2T5 361 aa11.92□□□□□ -0.5
CLK3-213ENST00000563842 CHST2Q9Y4C5 530 aa11.92□□□□□ -0.5
CLK3-213ENST00000563842 TESMINQ9Y4I5 508 aa11.92□□□□□ -0.5
CLK3-213ENST00000563842 POLQO75417 2590 aa11.92□□□□□ -0.5
CLK3-213ENST00000563842 CCDC168Q8NDH2 2452 aa11.91□□□□□ -0.5
CLK3-213ENST00000563842 IGKV3D-15A0A087WSY6 115 aa11.91□□□□□ -0.5
CLK3-213ENST00000563842 LOC100653049A0A140TA62 436 aa11.91□□□□□ -0.5
CLK3-213ENST00000563842 FBP2O00757 339 aa11.91□□□□□ -0.5
CLK3-213ENST00000563842 KRT34O76011 436 aa11.91□□□□□ -0.5
CLK3-213ENST00000563842 PRG2P13727 222 aa11.91□□□□□ -0.5
CLK3-213ENST00000563842 RGS8P57771 180 aaPredicted RBP11.91□□□□□ -0.5
CLK3-213ENST00000563842 CAPRIN1Q14444 709 aaKnown RBP11.91□□□□□ -0.5
CLK3-213ENST00000563842 REP15Q6BDI9 236 aa11.91□□□□□ -0.5
CLK3-213ENST00000563842 ABLIM2Q6H8Q1 611 aa11.91□□□□□ -0.5
CLK3-213ENST00000563842 NANOGP8Q6NSW7 305 aa11.91□□□□□ -0.5
CLK3-213ENST00000563842 C5orf46Q6UWT4 87 aa11.91□□□□□ -0.5
CLK3-213ENST00000563842 TFAP2EQ6VUC0 442 aa11.91□□□□□ -0.5
CLK3-213ENST00000563842 NUFIP2Q7Z417 695 aaKnown RBP11.91□□□□□ -0.5
CLK3-213ENST00000563842 NET1Q7Z628 596 aaPredicted RBP11.91□□□□□ -0.5
CLK3-213ENST00000563842 CDH24Q86UP0 819 aa11.91□□□□□ -0.5
CLK3-213ENST00000563842 SNX32Q86XE0 403 aa11.91□□□□□ -0.5
CLK3-213ENST00000563842 PTOV1Q86YD1 416 aa11.91□□□□□ -0.5
CLK3-213ENST00000563842 LSMEM1Q8N8F7 131 aa11.91□□□□□ -0.5
CLK3-213ENST00000563842 STEAP2Q8NFT2 490 aa11.91□□□□□ -0.5
CLK3-213ENST00000563842 OR10A6Q8NH74 314 aa11.91□□□□□ -0.5
CLK3-213ENST00000563842 RP9Q8TA86 221 aaKnown RBP11.91□□□□□ -0.5
CLK3-213ENST00000563842 STK35Q8TDR2 534 aa11.91□□□□□ -0.5
CLK3-213ENST00000563842 SLC26A7Q8TE54 656 aa11.91□□□□□ -0.5
CLK3-213ENST00000563842 DNAJA4Q8WW22 397 aaPredicted RBP11.91□□□□□ -0.5
CLK3-213ENST00000563842 RASSF5Q8WWW0 418 aa11.91□□□□□ -0.5
CLK3-213ENST00000563842 C3orf49Q96BT1 292 aa11.91□□□□□ -0.5
CLK3-213ENST00000563842 WFIKKN1Q96NZ8 548 aa11.91□□□□□ -0.5
CLK3-213ENST00000563842 NANOGQ9H9S0 305 aa11.91□□□□□ -0.5
CLK3-213ENST00000563842 TESQ9UGI8 421 aaKnown RBP11.91□□□□□ -0.5
CLK3-213ENST00000563842 AP3M1Q9Y2T2 418 aa11.91□□□□□ -0.5
CLK3-213ENST00000563842 PDZD2O15018 2839 aa11.9□□□□□ -0.5
CLK3-213ENST00000563842 ELOA3DA6NLF2 546 aaPredicted RBP11.9□□□□□ -0.5
CLK3-213ENST00000563842 MFN2O95140 757 aa11.9□□□□□ -0.5
CLK3-213ENST00000563842 CNOT4O95628 575 aaKnown RBP11.9□□□□□ -0.5
CLK3-213ENST00000563842 C8BP07358 591 aa11.9□□□□□ -0.5
CLK3-213ENST00000563842 PNMTP11086 282 aa11.9□□□□□ -0.5
CLK3-213ENST00000563842 PSMB1P20618 241 aaKnown RBP11.9□□□□□ -0.5
CLK3-213ENST00000563842 FPR1P21462 350 aa11.9□□□□□ -0.5
CLK3-213ENST00000563842 AQP1P29972 269 aa11.9□□□□□ -0.5
CLK3-213ENST00000563842 PCGF2P35227 344 aa11.9□□□□□ -0.5
CLK3-213ENST00000563842 OR3A2P47893 321 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 253.9 ms