RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 MAPK11Q15759 364 aa14.93□□□□□ -0.02
CLK3-210ENST00000563112 TTMPQ5BVD1 217 aa14.93□□□□□ -0.02
CLK3-210ENST00000563112 SLC2A7Q6PXP3 512 aa14.93□□□□□ -0.02
CLK3-210ENST00000563112 SSX8Q7RTT4 187 aa14.93□□□□□ -0.02
CLK3-210ENST00000563112 VRK2Q86Y07 508 aa14.93□□□□□ -0.02
CLK3-210ENST00000563112 WFDC11Q8NEX6 87 aa14.93□□□□□ -0.02
CLK3-210ENST00000563112 DNAJA3Q96EY1 480 aa14.93□□□□□ -0.02
CLK3-210ENST00000563112 TMEM19Q96HH6 336 aa14.93□□□□□ -0.02
CLK3-210ENST00000563112 POTEKPQ9BYX7 375 aa14.93□□□□□ -0.02
CLK3-210ENST00000563112 ESRP2Q9H6T0 727 aaKnown RBP14.93□□□□□ -0.02
CLK3-210ENST00000563112 PRSS50Q9UI38 385 aa14.93□□□□□ -0.02
CLK3-210ENST00000563112 NOSIPQ9Y314 301 aaKnown RBP14.93□□□□□ -0.02
CLK3-210ENST00000563112 IFT52Q9Y366 437 aa14.93□□□□□ -0.02
CLK3-210ENST00000563112 PCDHB14Q9Y5E9 798 aa14.93□□□□□ -0.02
CLK3-210ENST00000563112 NIPBLQ6KC79 2804 aaeCLIP14.93□□□□□ -0.02
CLK3-210ENST00000563112 PRR14LQ5THK1 2151 aa14.92□□□□□ -0.02
CLK3-210ENST00000563112 DSPPQ9NZW4 1301 aa14.92□□□□□ -0.02
CLK3-210ENST00000563112 A0A096LPI6 279 aa14.92□□□□□ -0.02
CLK3-210ENST00000563112 TMEM72A0PK05 275 aa14.92□□□□□ -0.02
CLK3-210ENST00000563112 THBS1P07996 1170 aa14.92□□□□□ -0.02
CLK3-210ENST00000563112 IRX1P78414 480 aaPredicted RBP14.92□□□□□ -0.02
CLK3-210ENST00000563112 FADDQ13158 208 aa14.92□□□□□ -0.02
CLK3-210ENST00000563112 RGNQ15493 299 aa14.92□□□□□ -0.02
CLK3-210ENST00000563112 TAB1Q15750 504 aa14.92□□□□□ -0.02
CLK3-210ENST00000563112 ZNF836Q6ZNA1 936 aa14.92□□□□□ -0.02
CLK3-210ENST00000563112 UBE2J2Q8N2K1 259 aa14.92□□□□□ -0.02
CLK3-210ENST00000563112 CADM2Q8N3J6 435 aa14.92□□□□□ -0.02
CLK3-210ENST00000563112 APH1AQ96BI3 265 aa14.92□□□□□ -0.02
CLK3-210ENST00000563112 MUCL1Q96DR8 90 aa14.92□□□□□ -0.02
CLK3-210ENST00000563112 PAIP1Q9H074 479 aaKnown RBP14.92□□□□□ -0.02
CLK3-210ENST00000563112 INTS9Q9NV88 658 aaKnown RBP14.92□□□□□ -0.02
CLK3-210ENST00000563112 RLIMQ9NVW2 624 aa14.92□□□□□ -0.02
CLK3-210ENST00000563112 ZNF443Q9Y2A4 671 aaPredicted RBP14.92□□□□□ -0.02
CLK3-210ENST00000563112 ZNF716A6NP11 495 aa14.91□□□□□ -0.02
CLK3-210ENST00000563112 C5orf58C9J3I9 102 aa14.91□□□□□ -0.02
CLK3-210ENST00000563112 MRPL33O75394 65 aaKnown RBP14.91□□□□□ -0.02
CLK3-210ENST00000563112 LYZL6O75951 148 aa14.91□□□□□ -0.02
CLK3-210ENST00000563112 CD3EP07766 207 aa14.91□□□□□ -0.02
CLK3-210ENST00000563112 GKN3PP0CG01 181 aa14.91□□□□□ -0.02
CLK3-210ENST00000563112 NCF2P19878 526 aaPredicted RBP14.91□□□□□ -0.02
CLK3-210ENST00000563112 SLC16A1P53985 500 aa14.91□□□□□ -0.02
CLK3-210ENST00000563112 STK11Q15831 433 aa14.91□□□□□ -0.02
CLK3-210ENST00000563112 RPS26P11Q5JNZ5 115 aaPredicted RBP14.91□□□□□ -0.02
CLK3-210ENST00000563112 RNF220Q5VTB9 566 aa14.91□□□□□ -0.02
CLK3-210ENST00000563112 PRAMEF8Q5VWM4 474 aa14.91□□□□□ -0.02
CLK3-210ENST00000563112 PRAMEF7Q5VXH5 474 aa14.91□□□□□ -0.02
CLK3-210ENST00000563112 FBXW9Q5XUX1 488 aa14.91□□□□□ -0.02
CLK3-210ENST00000563112 WBP2NLQ6ICG8 309 aa14.91□□□□□ -0.02
CLK3-210ENST00000563112 BLOC1S3Q6QNY0 202 aa14.91□□□□□ -0.02
CLK3-210ENST00000563112 ZC3HAV1Q7Z2W4 902 aaKnown RBP14.91□□□□□ -0.02
CLK3-210ENST00000563112 TMEM171Q8WVE6 324 aa14.91□□□□□ -0.02
CLK3-210ENST00000563112 SPDL1Q96EA4 605 aa14.91□□□□□ -0.02
CLK3-210ENST00000563112 EBF4Q9BQW3 602 aa14.91□□□□□ -0.02
CLK3-210ENST00000563112 TMEM204Q9BSN7 226 aa14.91□□□□□ -0.02
CLK3-210ENST00000563112 SPATA9Q9BWV2 254 aa14.91□□□□□ -0.02
CLK3-210ENST00000563112 ADAM19Q9H013 955 aa14.91□□□□□ -0.02
CLK3-210ENST00000563112 TMEM45AQ9NWC5 275 aa14.91□□□□□ -0.02
CLK3-210ENST00000563112 PARPBPQ9NWS1 579 aa14.91□□□□□ -0.02
CLK3-210ENST00000563112 CCDC167Q9P0B6 97 aa14.91□□□□□ -0.02
CLK3-210ENST00000563112 RNF115Q9Y4L5 304 aa14.91□□□□□ -0.02
CLK3-210ENST00000563112 NR5A2O00482 541 aa14.9□□□□□ -0.02
CLK3-210ENST00000563112 HS3ST1O14792 307 aa14.9□□□□□ -0.02
CLK3-210ENST00000563112 TMCC2O75069 709 aa14.9□□□□□ -0.02
CLK3-210ENST00000563112 PLAUP00749 431 aa14.9□□□□□ -0.02
CLK3-210ENST00000563112 IMPDH2P12268 514 aa14.9□□□□□ -0.02
CLK3-210ENST00000563112 GGT1P19440 569 aa14.9□□□□□ -0.02
CLK3-210ENST00000563112 PPIBP23284 216 aaKnown RBP14.9□□□□□ -0.02
CLK3-210ENST00000563112 IDUAP35475 653 aa14.9□□□□□ -0.02
CLK3-210ENST00000563112 ACAA2P42765 397 aaKnown RBP14.9□□□□□ -0.02
CLK3-210ENST00000563112 PPA1Q15181 289 aa14.9□□□□□ -0.02
CLK3-210ENST00000563112 ZNF311Q5JNZ3 666 aa14.9□□□□□ -0.02
CLK3-210ENST00000563112 Q5PR19 223 aa14.9□□□□□ -0.02
CLK3-210ENST00000563112 NCMAPQ5T1S8 102 aa14.9□□□□□ -0.02
CLK3-210ENST00000563112 P2RY8Q86VZ1 359 aa14.9□□□□□ -0.02
CLK3-210ENST00000563112 CCDC103Q8IW40 242 aa14.9□□□□□ -0.02
CLK3-210ENST00000563112 ZNF611Q8N823 705 aa14.9□□□□□ -0.02
CLK3-210ENST00000563112 BBS10Q8TAM1 723 aa14.9□□□□□ -0.02
CLK3-210ENST00000563112 VIPAS39Q9H9C1 493 aa14.9□□□□□ -0.02
CLK3-210ENST00000563112 BCL2L10Q9HD36 194 aa14.9□□□□□ -0.02
CLK3-210ENST00000563112 A4GALTQ9NPC4 353 aa14.9□□□□□ -0.02
CLK3-210ENST00000563112 DLL4Q9NR61 685 aa14.9□□□□□ -0.02
CLK3-210ENST00000563112 CIB4A0PJX0 185 aa14.89□□□□□ -0.03
CLK3-210ENST00000563112 CLOCKO15516 846 aa14.89□□□□□ -0.03
CLK3-210ENST00000563112 GPIP06744 558 aa14.89□□□□□ -0.03
CLK3-210ENST00000563112 NUDT7P0C024 238 aa14.89□□□□□ -0.03
CLK3-210ENST00000563112 BMP2P12643 396 aa14.89□□□□□ -0.03
CLK3-210ENST00000563112 IGHV1-2P23083 117 aa14.89□□□□□ -0.03
CLK3-210ENST00000563112 ATP4BP51164 291 aa14.89□□□□□ -0.03
CLK3-210ENST00000563112 H3F3AP84243 136 aa14.89□□□□□ -0.03
CLK3-210ENST00000563112 SQLEQ14534 574 aa14.89□□□□□ -0.03
CLK3-210ENST00000563112 AGKQ53H12 422 aa14.89□□□□□ -0.03
CLK3-210ENST00000563112 TIMM23BQ5SRD1 257 aa14.89□□□□□ -0.03
CLK3-210ENST00000563112 LRIF1Q5T3J3 769 aa14.89□□□□□ -0.03
CLK3-210ENST00000563112 PAQR6Q6TCH4 344 aa14.89□□□□□ -0.03
CLK3-210ENST00000563112 PRSS57Q6UWY2 283 aa14.89□□□□□ -0.03
CLK3-210ENST00000563112 FUNDC1Q8IVP5 155 aa14.89□□□□□ -0.03
CLK3-210ENST00000563112 CLIP4Q8N3C7 705 aa14.89□□□□□ -0.03
CLK3-210ENST00000563112 AKAP1Q92667 903 aaKnown RBP eCLIP14.89□□□□□ -0.03
CLK3-210ENST00000563112 PERPQ96FX8 193 aa14.89□□□□□ -0.03
CLK3-210ENST00000563112 C18orf12Q96KH6 178 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms