RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 GINS4Q9BRT9 223 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 DUX4Q9UBX2 424 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 CORO2BQ9UQ03 480 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 MAP4K5Q9Y4K4 846 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 PCYT1BQ9Y5K3 369 aaPredicted RBP12.3□□□□□ -0.44
CLK3-206ENST00000562078 LRRN3E7EW58 273 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 C1QTNF3-AMACRE9PGA6 284 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 H0YIV9 168 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 VEGFDO43915 354 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 UBL3O95164 117 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 GP1BAP07359 652 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 CPN1P15169 458 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 IFNGR1P15260 489 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 NOS3P29474 1203 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 CSF2RBP32927 897 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 RIDAP52758 137 aaKnown RBP12.3□□□□□ -0.44
CLK3-206ENST00000562078 RAB5BP61020 215 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 CDK6Q00534 326 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 DEFA6Q01524 100 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 DPTQ07507 201 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 EIF2S3LQ2VIR3 472 aaKnown RBP12.3□□□□□ -0.44
CLK3-206ENST00000562078 FAAP20Q6NZ36 180 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 MEX3DQ86XN8 651 aaKnown RBP12.3□□□□□ -0.44
CLK3-206ENST00000562078 KLHDC8AQ8IYD2 350 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 SLC44A3Q8N4M1 653 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 WDSUB1Q8N9V3 476 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 OR6K3Q8NGY3 331 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 PNPLA2Q96AD5 504 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 RGMAQ96B86 450 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 ORAI1Q96D31 301 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 ORAI3Q9BRQ5 295 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 LRRN3Q9H3W5 708 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 PRSS16Q9NQE7 514 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 UFSP2Q9NUQ7 469 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 FBXW2Q9UKT8 454 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 MYO10Q9HD67 2058 aa12.29□□□□□ -0.44
CLK3-206ENST00000562078 SNRNP200O75643 2136 aaKnown RBP12.29□□□□□ -0.44
CLK3-206ENST00000562078 A0A1W2PPE3 182 aa12.29□□□□□ -0.44
CLK3-206ENST00000562078 CREBL2O60519 120 aaPredicted RBP12.29□□□□□ -0.44
CLK3-206ENST00000562078 UCHL1P09936 223 aa12.29□□□□□ -0.44
CLK3-206ENST00000562078 ZNF35P13682 527 aa12.29□□□□□ -0.44
CLK3-206ENST00000562078 WASP42768 502 aa12.29□□□□□ -0.44
CLK3-206ENST00000562078 GCGRP47871 477 aa12.29□□□□□ -0.44
CLK3-206ENST00000562078 GIPRP48546 466 aa12.29□□□□□ -0.44
CLK3-206ENST00000562078 FABP9Q0Z7S8 132 aa12.29□□□□□ -0.44
CLK3-206ENST00000562078 TMEM52BQ4KMG9 183 aa12.29□□□□□ -0.44
CLK3-206ENST00000562078 CPTPQ5TA50 214 aa12.29□□□□□ -0.44
CLK3-206ENST00000562078 MOB3CQ70IA8 216 aa12.29□□□□□ -0.44
CLK3-206ENST00000562078 RBM45Q8IUH3 476 aaKnown RBP12.29□□□□□ -0.44
CLK3-206ENST00000562078 OR5AK3PQ8NH89 298 aa12.29□□□□□ -0.44
CLK3-206ENST00000562078 MFFQ9GZY8 342 aa12.29□□□□□ -0.44
CLK3-206ENST00000562078 TLNRD1Q9H1K6 362 aa12.29□□□□□ -0.44
CLK3-206ENST00000562078 UCK1Q9HA47 277 aa12.29□□□□□ -0.44
CLK3-206ENST00000562078 HRASLSQ9HDD0 168 aa12.29□□□□□ -0.44
CLK3-206ENST00000562078 SIRT4Q9Y6E7 314 aaPredicted RBP12.29□□□□□ -0.44
CLK3-206ENST00000562078 A0A1W2PRB8 838 aa12.29□□□□□ -0.44
CLK3-206ENST00000562078 C2CD4DB7Z1M9 353 aa12.29□□□□□ -0.44
CLK3-206ENST00000562078 E9PI62 339 aa12.29□□□□□ -0.44
CLK3-206ENST00000562078 PRODHO43272 600 aa12.29□□□□□ -0.44
CLK3-206ENST00000562078 RGS9O75916 674 aaPredicted RBP12.29□□□□□ -0.44
CLK3-206ENST00000562078 IDSP22304 550 aa12.29□□□□□ -0.44
CLK3-206ENST00000562078 PPIBP23284 216 aaKnown RBP12.29□□□□□ -0.44
CLK3-206ENST00000562078 CCR9P51686 369 aa12.29□□□□□ -0.44
CLK3-206ENST00000562078 UBE2MP61081 183 aaKnown RBP12.29□□□□□ -0.44
CLK3-206ENST00000562078 RELQ04864 619 aaPredicted RBP12.29□□□□□ -0.44
CLK3-206ENST00000562078 H3F3CQ6NXT2 135 aa12.29□□□□□ -0.44
CLK3-206ENST00000562078 SMARCD3Q6STE5 483 aa12.29□□□□□ -0.44
CLK3-206ENST00000562078 SLCO4C1Q6ZQN7 724 aa12.29□□□□□ -0.44
CLK3-206ENST00000562078 FAM83HQ6ZRV2 1179 aaPredicted RBP12.29□□□□□ -0.44
CLK3-206ENST00000562078 ARMC10Q8N2F6 343 aa12.29□□□□□ -0.44
CLK3-206ENST00000562078 OR4K1Q8NGD4 311 aa12.29□□□□□ -0.44
CLK3-206ENST00000562078 GAL3ST1Q99999 423 aa12.29□□□□□ -0.44
CLK3-206ENST00000562078 MVB12BQ9H7P6 319 aa12.29□□□□□ -0.44
CLK3-206ENST00000562078 NOX3Q9HBY0 568 aa12.29□□□□□ -0.44
CLK3-206ENST00000562078 KLHL1Q9NR64 748 aa12.29□□□□□ -0.44
CLK3-206ENST00000562078 ASB6Q9NWX5 421 aa12.29□□□□□ -0.44
CLK3-206ENST00000562078 RUVBL1Q9Y265 456 aaKnown RBP12.29□□□□□ -0.44
CLK3-206ENST00000562078 F5P12259 2224 aa12.28□□□□□ -0.44
CLK3-206ENST00000562078 C2orf74A8MZ97 194 aa12.28□□□□□ -0.44
CLK3-206ENST00000562078 SCAMP2O15127 329 aaKnown RBP12.28□□□□□ -0.44
CLK3-206ENST00000562078 CLN5O75503 358 aa12.28□□□□□ -0.44
CLK3-206ENST00000562078 SNAPC5O75971 98 aa12.28□□□□□ -0.44
CLK3-206ENST00000562078 PCCBP05166 539 aa12.28□□□□□ -0.44
CLK3-206ENST00000562078 SNRPBP14678 240 aaKnown RBP12.28□□□□□ -0.44
CLK3-206ENST00000562078 PPT1P50897 306 aa12.28□□□□□ -0.44
CLK3-206ENST00000562078 CCR8P51685 355 aa12.28□□□□□ -0.44
CLK3-206ENST00000562078 PSMD4P55036 377 aaKnown RBP12.28□□□□□ -0.44
CLK3-206ENST00000562078 BLOC1S1P78537 153 aa12.28□□□□□ -0.44
CLK3-206ENST00000562078 EFNB1P98172 346 aa12.28□□□□□ -0.44
CLK3-206ENST00000562078 DYRK1AQ13627 763 aa12.28□□□□□ -0.44
CLK3-206ENST00000562078 SLC25A30Q5SVS4 291 aa12.28□□□□□ -0.44
CLK3-206ENST00000562078 PIP5KL1Q5T9C9 394 aa12.28□□□□□ -0.44
CLK3-206ENST00000562078 DCAF12L2Q5VW00 463 aa12.28□□□□□ -0.44
CLK3-206ENST00000562078 ZNF626Q68DY1 528 aa12.28□□□□□ -0.44
CLK3-206ENST00000562078 IKBIPQ70UQ0 350 aa12.28□□□□□ -0.44
CLK3-206ENST00000562078 OR1S2Q8NGQ3 325 aa12.28□□□□□ -0.44
CLK3-206ENST00000562078 STK35Q8TDR2 534 aa12.28□□□□□ -0.44
CLK3-206ENST00000562078 KCTD12Q96CX2 325 aaKnown RBP12.28□□□□□ -0.44
CLK3-206ENST00000562078 RHOVQ96L33 236 aa12.28□□□□□ -0.44
CLK3-206ENST00000562078 WFDC6Q9BQY6 131 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms