RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 PGM3O95394 542 aa11.11□□□□□ -0.63
SNX1-209ENST00000559961 WNT11O96014 354 aa11.11□□□□□ -0.63
SNX1-209ENST00000559961 IGHV3-9P01782 118 aa11.11□□□□□ -0.63
SNX1-209ENST00000559961 GSNP06396 782 aa11.11□□□□□ -0.63
SNX1-209ENST00000559961 IGHV1-2P23083 117 aa11.11□□□□□ -0.63
SNX1-209ENST00000559961 EPHA3P29320 983 aa11.11□□□□□ -0.63
SNX1-209ENST00000559961 TACR3P29371 465 aa11.11□□□□□ -0.63
SNX1-209ENST00000559961 CDKN1AP38936 164 aa11.11□□□□□ -0.63
SNX1-209ENST00000559961 CRISP3P54108 245 aa11.11□□□□□ -0.63
SNX1-209ENST00000559961 PHC1P78364 1004 aa11.11□□□□□ -0.63
SNX1-209ENST00000559961 TNK1Q13470 666 aa11.11□□□□□ -0.63
SNX1-209ENST00000559961 LIN52Q52LA3 116 aa11.11□□□□□ -0.63
SNX1-209ENST00000559961 C1QTNF12Q5T7M4 302 aa11.11□□□□□ -0.63
SNX1-209ENST00000559961 AP1ARQ63HQ0 302 aa11.11□□□□□ -0.63
SNX1-209ENST00000559961 TMEM225Q6GV28 225 aa11.11□□□□□ -0.63
SNX1-209ENST00000559961 ABLIM2Q6H8Q1 611 aa11.11□□□□□ -0.63
SNX1-209ENST00000559961 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.11□□□□□ -0.63
SNX1-209ENST00000559961 HMGN2P46Q86SG4 172 aa11.11□□□□□ -0.63
SNX1-209ENST00000559961 CADM2Q8N3J6 435 aa11.11□□□□□ -0.63
SNX1-209ENST00000559961 ZNF433Q8N7K0 673 aaPredicted RBP11.11□□□□□ -0.63
SNX1-209ENST00000559961 ANKFN1Q8N957 763 aa11.11□□□□□ -0.63
SNX1-209ENST00000559961 KBTBD8Q8NFY9 601 aa11.11□□□□□ -0.63
SNX1-209ENST00000559961 OR52N5Q8NH56 324 aa11.11□□□□□ -0.63
SNX1-209ENST00000559961 PNPT1Q8TCS8 783 aaKnown RBP11.11□□□□□ -0.63
SNX1-209ENST00000559961 CNOT9Q92600 299 aaKnown RBP11.11□□□□□ -0.63
SNX1-209ENST00000559961 ZG16BQ96DA0 208 aa11.11□□□□□ -0.63
SNX1-209ENST00000559961 ITCHQ96J02 903 aa11.11□□□□□ -0.63
SNX1-209ENST00000559961 ARL5BQ96KC2 179 aa11.11□□□□□ -0.63
SNX1-209ENST00000559961 KCNS3Q9BQ31 491 aa11.11□□□□□ -0.63
SNX1-209ENST00000559961 RHNO1Q9BSD3 238 aa11.11□□□□□ -0.63
SNX1-209ENST00000559961 TRIM2Q9C040 744 aa11.11□□□□□ -0.63
SNX1-209ENST00000559961 OR11A1Q9GZK7 315 aa11.11□□□□□ -0.63
SNX1-209ENST00000559961 MANSC1Q9H8J5 431 aa11.11□□□□□ -0.63
SNX1-209ENST00000559961 CENPVL1A0A0U1RR11 272 aa11.1□□□□□ -0.63
SNX1-209ENST00000559961 TMEM120BA0PK00 339 aa11.1□□□□□ -0.63
SNX1-209ENST00000559961 C5orf58C9J3I9 102 aa11.1□□□□□ -0.63
SNX1-209ENST00000559961 RNF223E7ERA6 249 aa11.1□□□□□ -0.63
SNX1-209ENST00000559961 M0R1B8 84 aa11.1□□□□□ -0.63
SNX1-209ENST00000559961 FAAHO00519 579 aa11.1□□□□□ -0.63
SNX1-209ENST00000559961 SDHDO14521 159 aa11.1□□□□□ -0.63
SNX1-209ENST00000559961 UBDO15205 165 aa11.1□□□□□ -0.63
SNX1-209ENST00000559961 SOD3P08294 240 aa11.1□□□□□ -0.63
SNX1-209ENST00000559961 COX5AP20674 150 aa11.1□□□□□ -0.63
SNX1-209ENST00000559961 PAX7P23759 505 aa11.1□□□□□ -0.63
SNX1-209ENST00000559961 GTF2E2P29084 291 aaKnown RBP11.1□□□□□ -0.63
SNX1-209ENST00000559961 FABP6P51161 128 aa11.1□□□□□ -0.63
SNX1-209ENST00000559961 ZNF83P51522 516 aa11.1□□□□□ -0.63
SNX1-209ENST00000559961 SLC16A1P53985 500 aa11.1□□□□□ -0.63
SNX1-209ENST00000559961 DSCR9P59020 149 aa11.1□□□□□ -0.63
SNX1-209ENST00000559961 STX1BP61266 288 aa11.1□□□□□ -0.63
SNX1-209ENST00000559961 CHRNB3Q05901 458 aa11.1□□□□□ -0.63
SNX1-209ENST00000559961 DMTNQ08495 405 aa11.1□□□□□ -0.63
SNX1-209ENST00000559961 RAB35Q15286 201 aa11.1□□□□□ -0.63
SNX1-209ENST00000559961 PDCD4Q53EL6 469 aaKnown RBP11.1□□□□□ -0.63
SNX1-209ENST00000559961 C6orf10Q5SRN2 563 aa11.1□□□□□ -0.63
SNX1-209ENST00000559961 WBP2NLQ6ICG8 309 aa11.1□□□□□ -0.63
SNX1-209ENST00000559961 CCDC103Q8IW40 242 aa11.1□□□□□ -0.63
SNX1-209ENST00000559961 OR52P1PQ8NH57 321 aa11.1□□□□□ -0.63
SNX1-209ENST00000559961 ZNF75CPQ92670 426 aaPredicted RBP11.1□□□□□ -0.63
SNX1-209ENST00000559961 DNAJA3Q96EY1 480 aa11.1□□□□□ -0.63
SNX1-209ENST00000559961 DHRS9Q9BPW9 319 aa11.1□□□□□ -0.63
SNX1-209ENST00000559961 REG4Q9BYZ8 158 aa11.1□□□□□ -0.63
SNX1-209ENST00000559961 WDR55Q9H6Y2 383 aaPredicted RBP11.1□□□□□ -0.63
SNX1-209ENST00000559961 RPS6KB2Q9UBS0 482 aa11.1□□□□□ -0.63
SNX1-209ENST00000559961 OSGIN1Q9UJX0 560 aa11.1□□□□□ -0.63
SNX1-209ENST00000559961 ING1Q9UK53 422 aaPredicted RBP11.1□□□□□ -0.63
SNX1-209ENST00000559961 RAB21Q9UL25 225 aa11.1□□□□□ -0.63
SNX1-209ENST00000559961 AMDHD2Q9Y303 409 aa11.1□□□□□ -0.63
SNX1-209ENST00000559961 IFT52Q9Y366 437 aa11.1□□□□□ -0.63
SNX1-209ENST00000559961 PMF1-BGLAPU3KQ54 211 aa11.1□□□□□ -0.63
SNX1-209ENST00000559961 A0A096LPI6 279 aa11.09□□□□□ -0.63
SNX1-209ENST00000559961 A0A0G2JPF8 293 aa11.09□□□□□ -0.63
SNX1-209ENST00000559961 OR6C65A6NJZ3 312 aa11.09□□□□□ -0.63
SNX1-209ENST00000559961 HNRNPCL2B2RXH8 293 aa11.09□□□□□ -0.63
SNX1-209ENST00000559961 HNRNPCL3B7ZW38 293 aa11.09□□□□□ -0.63
SNX1-209ENST00000559961 INAFM1C9JVW0 142 aa11.09□□□□□ -0.63
SNX1-209ENST00000559961 OVOL3O00110 214 aa11.09□□□□□ -0.63
SNX1-209ENST00000559961 HNRNPCL1O60812 293 aaKnown RBP11.09□□□□□ -0.63
SNX1-209ENST00000559961 VAMP5O95183 116 aa11.09□□□□□ -0.63
SNX1-209ENST00000559961 DANCRP0C864 163 aa11.09□□□□□ -0.63
SNX1-209ENST00000559961 HNRNPCL4P0DMR1 293 aa11.09□□□□□ -0.63
SNX1-209ENST00000559961 NUDT6P53370 316 aa11.09□□□□□ -0.63
SNX1-209ENST00000559961 PRPS1P60891 318 aa11.09□□□□□ -0.63
SNX1-209ENST00000559961 DSTNP60981 165 aa11.09□□□□□ -0.63
SNX1-209ENST00000559961 EPS8Q12929 822 aa11.09□□□□□ -0.63
SNX1-209ENST00000559961 OTUD3Q5T2D3 398 aaPredicted RBP11.09□□□□□ -0.63
SNX1-209ENST00000559961 MRPL2Q5T653 305 aaKnown RBP11.09□□□□□ -0.63
SNX1-209ENST00000559961 PAQR6Q6TCH4 344 aa11.09□□□□□ -0.63
SNX1-209ENST00000559961 CLEC2AQ6UVW9 174 aa11.09□□□□□ -0.63
SNX1-209ENST00000559961 MSANTD1Q6ZTZ1 278 aa11.09□□□□□ -0.63
SNX1-209ENST00000559961 AAED1Q7RTV5 226 aa11.09□□□□□ -0.63
SNX1-209ENST00000559961 GPAT4Q86UL3 456 aa11.09□□□□□ -0.63
SNX1-209ENST00000559961 MIER2Q8N344 545 aa11.09□□□□□ -0.63
SNX1-209ENST00000559961 C17orf78Q8N4C9 275 aa11.09□□□□□ -0.63
SNX1-209ENST00000559961 POMGNT2Q8NAT1 580 aa11.09□□□□□ -0.63
SNX1-209ENST00000559961 C1orf162Q8NEQ5 155 aaPredicted RBP11.09□□□□□ -0.63
SNX1-209ENST00000559961 LILRB1Q8NHL6 650 aaPredicted RBP11.09□□□□□ -0.63
SNX1-209ENST00000559961 NEUROG1Q92886 237 aa11.09□□□□□ -0.63
SNX1-209ENST00000559961 ZBTB9Q96C00 473 aa11.09□□□□□ -0.63
SNX1-209ENST00000559961 ZNF524Q96C55 264 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms