RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 DBNDD1Q9H9R9 158 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 SLC38A10Q9HBR0 1119 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 POLD4Q9HCU8 107 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 DAZ3Q9NR90 486 aaKnown RBP2.41□□□□□ -2.02
VPS13C-208ENST00000559119 FGFR1OP2Q9NVK5 253 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 ARMC1Q9NVT9 282 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 SEPT10Q9P0V9 454 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 ARMCX3Q9UH62 379 aaPredicted RBP2.41□□□□□ -2.02
VPS13C-208ENST00000559119 LGALS13Q9UHV8 139 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 GNPTGQ9UJJ9 305 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 DNAJC12Q9UKB3 198 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 CDH7Q9ULB5 785 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 TRAF3IP3Q9Y228 551 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 LIPT1Q9Y234 373 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 SLIT3O75094 1523 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 EDC4Q6P2E9 1401 aaKnown RBP2.41□□□□□ -2.02
VPS13C-208ENST00000559119 AKAP12Q02952 1782 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 MROH2AA6NES4 1674 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 PIK3C2AO00443 1686 aa2.41□□□□□ -2.02
VPS13C-208ENST00000559119 KIF1BO60333 1816 aa2.4□□□□□ -2.02
VPS13C-208ENST00000559119 KIF20BQ96Q89 1820 aa2.4□□□□□ -2.02
VPS13C-208ENST00000559119 PTPRMP28827 1452 aa2.4□□□□□ -2.02
VPS13C-208ENST00000559119 ARHGEF28Q8N1W1 1705 aaKnown RBP2.4□□□□□ -2.02
VPS13C-208ENST00000559119 METP08581 1390 aa2.4□□□□□ -2.02
VPS13C-208ENST00000559119 TMEM131LA2VDJ0 1609 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 IQANK1A0A1B0GTG1 560 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 TMEM120BA0PK00 339 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 OOEPA6NGQ2 149 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 SDR42E2A6NKP2 422 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 H0YJX3 145 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 MAGEB3O15480 346 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 AQP9O43315 295 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 RIPK2O43353 540 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 EDF1O60869 148 aaKnown RBP2.4□□□□□ -2.03
VPS13C-208ENST00000559119 PALMO75781 387 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 SULT1C4O75897 302 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 TNFAIP8O95379 198 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 FGFR1OPO95684 399 aaKnown RBP2.4□□□□□ -2.03
VPS13C-208ENST00000559119 MMP1P03956 469 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 OCM2P0CE71 109 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 OCMP0CE72 109 aaPredicted RBP2.4□□□□□ -2.03
VPS13C-208ENST00000559119 HSPD1P10809 573 aaKnown RBP2.4□□□□□ -2.03
VPS13C-208ENST00000559119 ETS2P15036 469 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 CTRB1P17538 263 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 VCLP18206 1134 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 HLA-DPA1P20036 260 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 CYP3A5P20815 502 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 PRKACBP22694 351 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 CCNCP24863 283 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 PRDX6P30041 224 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 RPS10P46783 165 aaKnown RBP2.4□□□□□ -2.03
VPS13C-208ENST00000559119 HSPA13P48723 471 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 SNU13P55769 128 aaKnown RBP2.4□□□□□ -2.03
VPS13C-208ENST00000559119 ACTR3P61158 418 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 NAA20P61599 178 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 RPL32P62910 135 aaKnown RBP2.4□□□□□ -2.03
VPS13C-208ENST00000559119 NOP14P78316 857 aaKnown RBP2.4□□□□□ -2.03
VPS13C-208ENST00000559119 ARF5P84085 180 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 IL18R1Q13478 541 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 APOFQ13790 326 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 DPYSQ14117 519 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 PDK3Q15120 406 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 MOGQ16653 247 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 ZNF630Q2M218 657 aaPredicted RBP2.4□□□□□ -2.03
VPS13C-208ENST00000559119 ZNF674Q2M3X9 581 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 RGS21Q2M5E4 152 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 TYSND1Q2T9J0 566 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 HKDC1Q2TB90 917 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 NADK2Q4G0N4 442 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 DNAL1Q4LDG9 190 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 OR2B11Q5JQS5 317 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 DCST2Q5T1A1 773 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 SLX4IPQ5VYV7 408 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 METTL21CQ5VZV1 264 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 CTRB2Q6GPI1 263 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 IZUMO2Q6UXV1 221 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 LINC00299Q6ZSB3 139 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 ASPGQ86U10 573 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 SLC51BQ86UW2 128 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 ZNF100Q8IYN0 542 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 SYCE1Q8N0S2 351 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 ZNF713Q8N859 430 aaPredicted RBP2.4□□□□□ -2.03
VPS13C-208ENST00000559119 FAM133AQ8N9E0 248 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 NHLRC2Q8NBF2 726 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 CATSPER1Q8NEC5 780 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 LILRB4Q8NHJ6 448 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 PHF10Q8WUB8 498 aaKnown RBP2.4□□□□□ -2.03
VPS13C-208ENST00000559119 FAM172AQ8WUF8 416 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 C10orf82Q8WW14 230 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 TRUB1Q8WWH5 349 aaKnown RBP2.4□□□□□ -2.03
VPS13C-208ENST00000559119 ZNF75CPQ92670 426 aaPredicted RBP2.4□□□□□ -2.03
VPS13C-208ENST00000559119 ESR2Q92731 530 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 CDKL2Q92772 493 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 MS4A14Q96JA4 679 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 TTC25Q96NG3 672 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 SMIM14Q96QK8 99 aa2.4□□□□□ -2.03
VPS13C-208ENST00000559119 TGS1Q96RS0 853 aaKnown RBP2.4□□□□□ -2.03
VPS13C-208ENST00000559119 PARK7Q99497 189 aaKnown RBP2.4□□□□□ -2.03
VPS13C-208ENST00000559119 DDX50Q9BQ39 737 aaKnown RBP2.4□□□□□ -2.03
VPS13C-208ENST00000559119 RIOK1Q9BRS2 568 aaKnown RBP2.4□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms