RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 HK1P19367 917 aa9.73□□□□□ -0.85
CUX1-217ENST00000558836 PYCR1P32322 319 aa9.73□□□□□ -0.85
CUX1-217ENST00000558836 LANCL3Q6ZV70 420 aa9.73□□□□□ -0.85
CUX1-217ENST00000558836 TMPRSS9Q7Z410 1059 aa9.73□□□□□ -0.85
CUX1-217ENST00000558836 SYT9Q86SS6 491 aa9.73□□□□□ -0.85
CUX1-217ENST00000558836 OR5J2Q8NH18 312 aa9.73□□□□□ -0.85
CUX1-217ENST00000558836 OR5W2Q8NH69 310 aa9.73□□□□□ -0.85
CUX1-217ENST00000558836 MOSPD2Q8NHP6 518 aa9.73□□□□□ -0.85
CUX1-217ENST00000558836 MOGAT1Q96PD6 335 aa9.73□□□□□ -0.85
CUX1-217ENST00000558836 MKKSQ9NPJ1 570 aaPredicted RBP9.73□□□□□ -0.85
CUX1-217ENST00000558836 GMEB2Q9UKD1 530 aa9.73□□□□□ -0.85
CUX1-217ENST00000558836 MKL2Q9ULH7 1088 aa9.73□□□□□ -0.85
CUX1-217ENST00000558836 ZMIZ1Q9ULJ6 1067 aa9.73□□□□□ -0.85
CUX1-217ENST00000558836 TRDV1A0A1B0GX56 115 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 A0A1W2PQ09 198 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 ISPDA4D126 451 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 H0YIG0 161 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 GTPBP1O00178 669 aaKnown RBP9.72□□□□□ -0.85
CUX1-217ENST00000558836 TFECO14948 347 aaPredicted RBP9.72□□□□□ -0.85
CUX1-217ENST00000558836 RNF13O43567 381 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 HLA-DPB1P04440 258 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 F13BP05160 661 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 APEX1P27695 318 aaKnown RBP9.72□□□□□ -0.85
CUX1-217ENST00000558836 SHC1P29353 583 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 ETV6P41212 452 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 NR0B1P51843 470 aaKnown RBP9.72□□□□□ -0.85
CUX1-217ENST00000558836 TPTEP56180 551 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 ZNF85Q03923 595 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 KLHL26Q53HC5 615 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 OGFOD3Q6PK18 319 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 LINC00114Q6XXX2 140 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 OR6K6Q8NGW6 343 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 SLC2A12Q8TD20 617 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 SGTBQ96EQ0 304 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 NUDT9Q9BW91 350 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 SYNDIG1Q9H7V2 258 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 ASB6Q9NWX5 421 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 UGT2A1Q9Y4X1 527 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 ASPMQ8IZT6 3477 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 A0A087WUJ7 227 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 IQCMA0A1B0GVH7 501 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 SLC22A31A6NKX4 558 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 H3BMH7 237 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 SNPHO15079 494 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 ICOSLGO75144 302 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 UTS2O95399 124 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 TFP02787 698 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 ZNF24P17028 368 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 MST1P26927 711 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 SLC6A6P31641 620 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 AQP2P41181 271 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 CD97P48960 835 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 AFF3P51826 1226 aaKnown RBP9.72□□□□□ -0.85
CUX1-217ENST00000558836 P2RY14Q15391 338 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 TOMM34Q15785 309 aaPredicted RBP9.72□□□□□ -0.85
CUX1-217ENST00000558836 TMEM44Q2T9K0 475 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 PYDC2Q56P42 97 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 CD200R1LQ6Q8B3 271 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 GPR135Q8IZ08 494 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 C7orf57Q8NEG2 295 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 OR52N1Q8NH53 320 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 THAP3Q8WTV1 239 aaPredicted RBP9.72□□□□□ -0.85
CUX1-217ENST00000558836 SRRQ9GZT4 340 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 CTSFQ9UBX1 484 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 EML5Q05BV3 1969 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 IGKV1D-42A0A075B6H8 117 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 A0A1W2PRG6 482 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 CPED1A4D0V7 1026 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 FITM1A5D6W6 292 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 OR6C68A6NDL8 312 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 ELOA3DA6NLF2 546 aaPredicted RBP9.72□□□□□ -0.85
CUX1-217ENST00000558836 H7C1C5 153 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 SCDO00767 359 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 GIMD1P0DJR0 217 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 IL7P13232 177 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 SLC2A5P22732 501 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 FGF9P31371 208 aaPredicted RBP9.72□□□□□ -0.85
CUX1-217ENST00000558836 OR10A3P58181 314 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 STARD6P59095 220 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 LCN6P62502 163 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 GALEQ14376 348 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 ELOA3BQ3SY89 546 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 DDI2Q5TDH0 399 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 ARHGAP40Q5TG30 622 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 OR5M10Q6IEU7 315 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 SPEM1Q8N4L4 309 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 ELOA3Q8NG57 546 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 ZNF563Q8TA94 476 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 FAM174AQ8TBP5 190 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 DNAJA4Q8WW22 397 aaPredicted RBP9.72□□□□□ -0.85
CUX1-217ENST00000558836 PMM1Q92871 262 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 PPP1R14BQ96C90 147 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 ELF4Q99607 663 aaPredicted RBP9.72□□□□□ -0.85
CUX1-217ENST00000558836 NDC1Q9BTX1 674 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 SP140LQ9H930 580 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 UCK1Q9HA47 277 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 PRODH2Q9UF12 536 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 CHRNA9Q9UGM1 479 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 N6AMT1Q9Y5N5 214 aa9.72□□□□□ -0.85
CUX1-217ENST00000558836 IDSB3KWA1 339 aa9.71□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms