RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 S100A16Q96FQ6 103 aaKnown RBP10.48□□□□□ -0.73
LDLR-208ENST00000558518 LRRC46Q96FV0 321 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 TRMT2BQ96GJ1 504 aaKnown RBP10.48□□□□□ -0.73
LDLR-208ENST00000558518 KLHL15Q96M94 604 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 LMF1Q96S06 567 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 NMNAT3Q96T66 252 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 ZNF471Q9BX82 626 aaPredicted RBP10.48□□□□□ -0.73
LDLR-208ENST00000558518 SLC39A1Q9NY26 324 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 KLHL9Q9P2J3 617 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 ING1Q9UK53 422 aaPredicted RBP10.48□□□□□ -0.73
LDLR-208ENST00000558518 ZMIZ1Q9ULJ6 1067 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 MED31Q9Y3C7 131 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 KCNMB2Q9Y691 235 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 TRPM7Q96QT4 1865 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 TVP23AA6NH52 213 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 SLC22A31A6NKX4 558 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 DNAJB6O75190 326 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 ACRP10323 421 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 F3P13726 295 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 S100A11P31949 105 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 VIPR2P41587 438 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 ZNF169Q14929 603 aaPredicted RBP10.47□□□□□ -0.73
LDLR-208ENST00000558518 LCTLQ6UWM7 567 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 RAB42Q8N4Z0 105 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 OR56A1Q8NGH5 318 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 VOPP1Q96AW1 172 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 ARRDC3Q96B67 414 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 ZNF416Q9BWM5 594 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 SPHK1Q9NYA1 384 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 DPP7Q9UHL4 492 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 PCDHGA9Q9Y5G4 932 aaKnown RBP10.47□□□□□ -0.73
LDLR-208ENST00000558518 TCF20Q9UGU0 1960 aaKnown RBP10.47□□□□□ -0.73
LDLR-208ENST00000558518 CHD7Q9P2D1 2997 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 ZIC2O95409 532 aaPredicted RBP10.47□□□□□ -0.73
LDLR-208ENST00000558518 ATP1B1P05026 303 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 OR8G3PP0DMU2 310 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 NAGAP17050 411 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 CDK2P24941 298 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 ITPKBP27987 946 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 ACADLP28330 430 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 HLXQ14774 488 aaPredicted RBP10.47□□□□□ -0.73
LDLR-208ENST00000558518 KIAA1211LQ6NV74 962 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 GSG1LQ6UXU4 331 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 DPPA4Q7L190 304 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 GPAT4Q86UL3 456 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 SETD7Q8WTS6 366 aaKnown RBP10.47□□□□□ -0.73
LDLR-208ENST00000558518 NXPE3Q969Y0 559 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 C3orf49Q96BT1 292 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 ACSS1Q9NUB1 689 aaPredicted RBP10.47□□□□□ -0.73
LDLR-208ENST00000558518 LYARQ9NX58 379 aaKnown RBP10.47□□□□□ -0.73
LDLR-208ENST00000558518 PLEKHA6Q9Y2H5 1048 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 KHNYNO15037 678 aaKnown RBP10.47□□□□□ -0.73
LDLR-208ENST00000558518 CASC3O15234 703 aaKnown RBP10.47□□□□□ -0.73
LDLR-208ENST00000558518 SDC3O75056 442 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 RLN2P04090 185 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 ANXA2P07355 339 aaKnown RBP10.47□□□□□ -0.73
LDLR-208ENST00000558518 NMBP08949 121 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 CPMP14384 443 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 DEFB103AP81534 67 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 MC2RQ01718 297 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 ZNF85Q03923 595 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 NKPD1Q17RQ9 610 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 DCAF12L2Q5VW00 463 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 TMEM185AQ8NFB2 350 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 OR4D10Q8NGI6 311 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 OR10K1Q8NGX5 313 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 OR2L2Q8NH16 312 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 PTDSS2Q9BVG9 487 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 SLC6A20Q9NP91 592 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 HPF1Q9NWY4 346 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 CLDND1Q9NY35 253 aa10.47□□□□□ -0.73
LDLR-208ENST00000558518 HLA-DQA2P01906 255 aa10.46□□□□□ -0.73
LDLR-208ENST00000558518 GABRA3P34903 492 aa10.46□□□□□ -0.73
LDLR-208ENST00000558518 VASPP50552 380 aaPredicted RBP10.46□□□□□ -0.73
LDLR-208ENST00000558518 SNRPNP63162 240 aaKnown RBP10.46□□□□□ -0.73
LDLR-208ENST00000558518 FZD5Q13467 585 aa10.46□□□□□ -0.73
LDLR-208ENST00000558518 CD99L2Q8TCZ2 262 aa10.46□□□□□ -0.73
LDLR-208ENST00000558518 INSM2Q96T92 566 aaPredicted RBP10.46□□□□□ -0.73
LDLR-208ENST00000558518 TMEM231Q9H6L2 316 aa10.46□□□□□ -0.73
LDLR-208ENST00000558518 ISYNA1Q9NPH2 558 aa10.46□□□□□ -0.73
LDLR-208ENST00000558518 A0A0G2JK05 382 aa10.46□□□□□ -0.73
LDLR-208ENST00000558518 SUSD5O60279 629 aa10.46□□□□□ -0.73
LDLR-208ENST00000558518 RCBTB2O95199 551 aa10.46□□□□□ -0.73
LDLR-208ENST00000558518 F12P00748 615 aaPredicted RBP10.46□□□□□ -0.73
LDLR-208ENST00000558518 IGHA1P01876 353 aa10.46□□□□□ -0.73
LDLR-208ENST00000558518 SEC61A1P61619 476 aaKnown RBP10.46□□□□□ -0.73
LDLR-208ENST00000558518 EFNB1P98172 346 aa10.46□□□□□ -0.73
LDLR-208ENST00000558518 PLA2G7Q13093 441 aa10.46□□□□□ -0.73
LDLR-208ENST00000558518 RAB33AQ14088 237 aa10.46□□□□□ -0.73
LDLR-208ENST00000558518 GK2Q14410 553 aaPredicted RBP10.46□□□□□ -0.73
LDLR-208ENST00000558518 CLVS2Q5SYC1 327 aa10.46□□□□□ -0.73
LDLR-208ENST00000558518 RNLSQ5VYX0 342 aa10.46□□□□□ -0.73
LDLR-208ENST00000558518 B3GNTL1Q67FW5 361 aaPredicted RBP10.46□□□□□ -0.73
LDLR-208ENST00000558518 ZCCHC12Q6PEW1 402 aa10.46□□□□□ -0.73
LDLR-208ENST00000558518 ZNF627Q7L945 461 aa10.46□□□□□ -0.73
LDLR-208ENST00000558518 C12orf40Q86WS4 652 aa10.46□□□□□ -0.73
LDLR-208ENST00000558518 CASTOR1Q8WTX7 329 aa10.46□□□□□ -0.73
LDLR-208ENST00000558518 PELI1Q96FA3 418 aa10.46□□□□□ -0.73
LDLR-208ENST00000558518 STARD5Q9NSY2 213 aa10.46□□□□□ -0.73
LDLR-208ENST00000558518 SAGE1Q9NXZ1 904 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms