RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	DNPH1	O43598	174 aa		11.06	□□□□□ -0.64
SHMT2-223	ENST00000556689	PLIN3	O60664	434 aa		11.06	□□□□□ -0.64
SHMT2-223	ENST00000556689	FCMR	O60667	390 aa		11.06	□□□□□ -0.64
SHMT2-223	ENST00000556689	STX11	O75558	287 aa		11.06	□□□□□ -0.64
SHMT2-223	ENST00000556689	UGT2B17	O75795	530 aa		11.06	□□□□□ -0.64
SHMT2-223	ENST00000556689	C6orf47	O95873	294 aa		11.06	□□□□□ -0.64
SHMT2-223	ENST00000556689	WNT11	O96014	354 aa		11.06	□□□□□ -0.64
SHMT2-223	ENST00000556689	MATN1	P21941	496 aa		11.06	□□□□□ -0.64
SHMT2-223	ENST00000556689	MAPK1	P28482	360 aa		11.06	□□□□□ -0.64
SHMT2-223	ENST00000556689	SERPINF1	P36955	418 aa		11.06	□□□□□ -0.64
SHMT2-223	ENST00000556689	OR2B6	P58173	313 aa		11.06	□□□□□ -0.64
SHMT2-223	ENST00000556689	AGBL2	Q5U5Z8	902 aa		11.06	□□□□□ -0.64
SHMT2-223	ENST00000556689	CASP12	Q6UXS9	341 aa		11.06	□□□□□ -0.64
SHMT2-223	ENST00000556689	DDIAS	Q8IXT1	998 aa		11.06	□□□□□ -0.64
SHMT2-223	ENST00000556689	ZNF563	Q8TA94	476 aa		11.06	□□□□□ -0.64
SHMT2-223	ENST00000556689	SFXN5	Q8TD22	340 aa		11.06	□□□□□ -0.64
SHMT2-223	ENST00000556689	COQ8B	Q96D53	544 aa		11.06	□□□□□ -0.64
SHMT2-223	ENST00000556689	DNAJA3	Q96EY1	480 aa		11.06	□□□□□ -0.64
SHMT2-223	ENST00000556689	C1orf159	Q96HA4	380 aa		11.06	□□□□□ -0.64
SHMT2-223	ENST00000556689	ATP6V1G3	Q96LB4	118 aa		11.06	□□□□□ -0.64
SHMT2-223	ENST00000556689	CCDC106	Q9BWC9	280 aa		11.06	□□□□□ -0.64
SHMT2-223	ENST00000556689	C12orf65	Q9H3J6	166 aa	Known RBP	11.06	□□□□□ -0.64
SHMT2-223	ENST00000556689	SLC7A10	Q9NS82	523 aa		11.06	□□□□□ -0.64
SHMT2-223	ENST00000556689	ZNF446	Q9NWS9	450 aa		11.06	□□□□□ -0.64
SHMT2-223	ENST00000556689	CHRNA9	Q9UGM1	479 aa		11.06	□□□□□ -0.64
SHMT2-223	ENST00000556689	MKLN1	Q9UL63	735 aa		11.06	□□□□□ -0.64
SHMT2-223	ENST00000556689	TRAPPC4	Q9Y296	219 aa		11.06	□□□□□ -0.64
SHMT2-223	ENST00000556689	COPE	O14579	308 aa		11.05	□□□□□ -0.64
SHMT2-223	ENST00000556689	LYPLA1	O75608	230 aa	Predicted RBP	11.05	□□□□□ -0.64
SHMT2-223	ENST00000556689	AK1	P00568	194 aa		11.05	□□□□□ -0.64
SHMT2-223	ENST00000556689	MPG	P29372	298 aa		11.05	□□□□□ -0.64
SHMT2-223	ENST00000556689	CRHR1	P34998	444 aa		11.05	□□□□□ -0.64
SHMT2-223	ENST00000556689	SRP14	P37108	136 aa	Known RBP	11.05	□□□□□ -0.64
SHMT2-223	ENST00000556689	H3F3A	P84243	136 aa		11.05	□□□□□ -0.64
SHMT2-223	ENST00000556689	SLC25A3	Q00325	362 aa		11.05	□□□□□ -0.64
SHMT2-223	ENST00000556689	ARHGAP11B	Q3KRB8	267 aa		11.05	□□□□□ -0.64
SHMT2-223	ENST00000556689	TSPO2	Q5TGU0	170 aa		11.05	□□□□□ -0.64
SHMT2-223	ENST00000556689	KANK2	Q63ZY3	851 aa		11.05	□□□□□ -0.64
SHMT2-223	ENST00000556689	KLHL24	Q6TFL4	600 aa		11.05	□□□□□ -0.64
SHMT2-223	ENST00000556689	C12orf54	Q6X4T0	127 aa		11.05	□□□□□ -0.64
SHMT2-223	ENST00000556689	SLC46A3	Q7Z3Q1	461 aa		11.05	□□□□□ -0.64
SHMT2-223	ENST00000556689	C6orf120	Q7Z4R8	191 aa		11.05	□□□□□ -0.64
SHMT2-223	ENST00000556689	ADGRG3	Q86Y34	549 aa		11.05	□□□□□ -0.64
SHMT2-223	ENST00000556689	ARFGAP2	Q8N6H7	521 aa		11.05	□□□□□ -0.64
SHMT2-223	ENST00000556689	OR5AK3P	Q8NH89	298 aa		11.05	□□□□□ -0.64
SHMT2-223	ENST00000556689	PPP3R2	Q96LZ3	170 aa		11.05	□□□□□ -0.64
SHMT2-223	ENST00000556689	NAA11	Q9BSU3	229 aa	Predicted RBP	11.05	□□□□□ -0.64
SHMT2-223	ENST00000556689	PLA2G12A	Q9BZM1	189 aa		11.05	□□□□□ -0.64
SHMT2-223	ENST00000556689	BPESC1	Q9GZL8	116 aa		11.05	□□□□□ -0.64
SHMT2-223	ENST00000556689	TMBIM4	Q9HC24	238 aa		11.05	□□□□□ -0.64
SHMT2-223	ENST00000556689	NKIRAS1	Q9NYS0	192 aa		11.05	□□□□□ -0.64
SHMT2-223	ENST00000556689	TMEM181	Q9P2C4	612 aa		11.05	□□□□□ -0.64
SHMT2-223	ENST00000556689	TMEFF2	Q9UIK5	374 aa	Predicted RBP	11.05	□□□□□ -0.64
SHMT2-223	ENST00000556689	MID2	Q9UJV3	735 aa		11.05	□□□□□ -0.64
SHMT2-223	ENST00000556689	SLC9A8	Q9Y2E8	581 aa		11.05	□□□□□ -0.64
SHMT2-223	ENST00000556689	MALRD1	Q5VYJ5	2156 aa		11.04	□□□□□ -0.64
SHMT2-223	ENST00000556689		B9A039	149 aa		11.04	□□□□□ -0.64
SHMT2-223	ENST00000556689	WIPF1	O43516	503 aa		11.04	□□□□□ -0.64
SHMT2-223	ENST00000556689	EIF1B	O60739	113 aa	Known RBP	11.04	□□□□□ -0.64
SHMT2-223	ENST00000556689	PEX11A	O75192	247 aa		11.04	□□□□□ -0.64
SHMT2-223	ENST00000556689	SASH3	O75995	380 aa		11.04	□□□□□ -0.64
SHMT2-223	ENST00000556689	FGF4	P08620	206 aa		11.04	□□□□□ -0.64
SHMT2-223	ENST00000556689	KRT4	P19013	534 aa		11.04	□□□□□ -0.64
SHMT2-223	ENST00000556689	CCNA2	P20248	432 aa		11.04	□□□□□ -0.64
SHMT2-223	ENST00000556689	PRPS1L1	P21108	318 aa		11.04	□□□□□ -0.64
SHMT2-223	ENST00000556689	RYK	P34925	604 aa		11.04	□□□□□ -0.64
SHMT2-223	ENST00000556689	PGM1	P36871	562 aa		11.04	□□□□□ -0.64
SHMT2-223	ENST00000556689	RPS26	P62854	115 aa	Known RBP	11.04	□□□□□ -0.64
SHMT2-223	ENST00000556689	HBA1	P69905	142 aa		11.04	□□□□□ -0.64
SHMT2-223	ENST00000556689	UGT3A2	Q3SY77	523 aa		11.04	□□□□□ -0.64
SHMT2-223	ENST00000556689	GRINA	Q7Z429	371 aa		11.04	□□□□□ -0.64
SHMT2-223	ENST00000556689	SPATA19	Q7Z5L4	167 aa		11.04	□□□□□ -0.64
SHMT2-223	ENST00000556689	MEX3D	Q86XN8	651 aa	Known RBP	11.04	□□□□□ -0.64
SHMT2-223	ENST00000556689	C10orf107	Q8IVU9	208 aa		11.04	□□□□□ -0.64
SHMT2-223	ENST00000556689	ANKS4B	Q8N8V4	417 aa		11.04	□□□□□ -0.64
SHMT2-223	ENST00000556689	TWIST2	Q8WVJ9	160 aa		11.04	□□□□□ -0.64
SHMT2-223	ENST00000556689	PMM1	Q92871	262 aa		11.04	□□□□□ -0.64
SHMT2-223	ENST00000556689	APOPT1	Q96IL0	206 aa		11.04	□□□□□ -0.64
SHMT2-223	ENST00000556689	KCNS3	Q9BQ31	491 aa		11.04	□□□□□ -0.64
SHMT2-223	ENST00000556689	SOX7	Q9BT81	388 aa		11.04	□□□□□ -0.64
SHMT2-223	ENST00000556689	GATA5	Q9BWX5	397 aa	Predicted RBP	11.04	□□□□□ -0.64
SHMT2-223	ENST00000556689	BHLHE41	Q9C0J9	482 aa	Predicted RBP	11.04	□□□□□ -0.64
SHMT2-223	ENST00000556689	OR11A1	Q9GZK7	315 aa		11.04	□□□□□ -0.64
SHMT2-223	ENST00000556689	EXD2	Q9NVH0	621 aa		11.04	□□□□□ -0.64
SHMT2-223	ENST00000556689	SLC35A3	Q9Y2D2	325 aa		11.04	□□□□□ -0.64
SHMT2-223	ENST00000556689	FLVCR1	Q9Y5Y0	555 aa		11.04	□□□□□ -0.64
SHMT2-223	ENST00000556689	PLCE1	Q9P212	2302 aa		11.04	□□□□□ -0.64
SHMT2-223	ENST00000556689	CENPVL1	A0A0U1RR11	272 aa		11.03	□□□□□ -0.64
SHMT2-223	ENST00000556689	LRP5L	A4QPB2	252 aa		11.03	□□□□□ -0.64
SHMT2-223	ENST00000556689	KLF11	O14901	512 aa		11.03	□□□□□ -0.64
SHMT2-223	ENST00000556689	PIP5K1B	O14986	540 aa		11.03	□□□□□ -0.64
SHMT2-223	ENST00000556689	SPRY1	O43609	319 aa	Predicted RBP	11.03	□□□□□ -0.64
SHMT2-223	ENST00000556689	TRIM13	O60858	407 aa		11.03	□□□□□ -0.64
SHMT2-223	ENST00000556689	STAMBP	O95630	424 aa		11.03	□□□□□ -0.64
SHMT2-223	ENST00000556689	ITGA2	P17301	1181 aa		11.03	□□□□□ -0.64
SHMT2-223	ENST00000556689	CDH2	P19022	906 aa	Predicted RBP	11.03	□□□□□ -0.64
SHMT2-223	ENST00000556689	PAX7	P23759	505 aa		11.03	□□□□□ -0.64
SHMT2-223	ENST00000556689	CFP	P27918	469 aa		11.03	□□□□□ -0.64
SHMT2-223	ENST00000556689	SOAT1	P35610	550 aa		11.03	□□□□□ -0.64
SHMT2-223	ENST00000556689	IDH3G	P51553	393 aa	Predicted RBP	11.03	□□□□□ -0.64

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