RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 C1QL3Q5VWW1 255 aa12.62□□□□□ -0.39
VIPAS39-208ENST00000556412 TTC33Q6PID6 262 aaPredicted RBP12.62□□□□□ -0.39
VIPAS39-208ENST00000556412 OFCC1Q8IZS5 231 aa12.62□□□□□ -0.39
VIPAS39-208ENST00000556412 C10orf53Q8N6V4 93 aa12.62□□□□□ -0.39
VIPAS39-208ENST00000556412 TMEM255BQ8WV15 326 aa12.62□□□□□ -0.39
VIPAS39-208ENST00000556412 OSTF1Q92882 214 aa12.62□□□□□ -0.39
VIPAS39-208ENST00000556412 ZNF845Q96IR2 970 aaPredicted RBP12.62□□□□□ -0.39
VIPAS39-208ENST00000556412 TUBA1CQ9BQE3 449 aa12.62□□□□□ -0.39
VIPAS39-208ENST00000556412 NMNAT1Q9HAN9 279 aaPredicted RBP12.62□□□□□ -0.39
VIPAS39-208ENST00000556412 ZNF835Q9Y2P0 537 aa12.62□□□□□ -0.39
VIPAS39-208ENST00000556412 LYPD3O95274 346 aa12.62□□□□□ -0.39
VIPAS39-208ENST00000556412 AHSA1O95433 338 aa12.62□□□□□ -0.39
VIPAS39-208ENST00000556412 H1F0P07305 194 aaKnown RBP12.62□□□□□ -0.39
VIPAS39-208ENST00000556412 RRM2P31350 389 aa12.62□□□□□ -0.39
VIPAS39-208ENST00000556412 RPS5P46782 204 aaKnown RBP12.62□□□□□ -0.39
VIPAS39-208ENST00000556412 MAP2K6P52564 334 aa12.62□□□□□ -0.39
VIPAS39-208ENST00000556412 CARD18P57730 90 aa12.62□□□□□ -0.39
VIPAS39-208ENST00000556412 OR2B6P58173 313 aa12.62□□□□□ -0.39
VIPAS39-208ENST00000556412 TRAM2Q15035 370 aa12.62□□□□□ -0.39
VIPAS39-208ENST00000556412 CTU2Q2VPK5 515 aaKnown RBP12.62□□□□□ -0.39
VIPAS39-208ENST00000556412 C1orf140Q5VVS0 124 aa12.62□□□□□ -0.39
VIPAS39-208ENST00000556412 DOLPP1Q86YN1 238 aa12.62□□□□□ -0.39
VIPAS39-208ENST00000556412 SLC25A36Q96CQ1 311 aa12.62□□□□□ -0.39
VIPAS39-208ENST00000556412 KTI12Q96EK9 354 aaPredicted RBP12.62□□□□□ -0.39
VIPAS39-208ENST00000556412 MPP4Q96JB8 637 aa12.62□□□□□ -0.39
VIPAS39-208ENST00000556412 ZNF347Q96SE7 839 aa12.62□□□□□ -0.39
VIPAS39-208ENST00000556412 DENND2DQ9H6A0 471 aaPredicted RBP12.62□□□□□ -0.39
VIPAS39-208ENST00000556412 NINQ8N4C6 2090 aa12.62□□□□□ -0.39
VIPAS39-208ENST00000556412 EML6Q6ZMW3 1958 aa12.61□□□□□ -0.39
VIPAS39-208ENST00000556412 IGKV1D-42A0A075B6H8 117 aa12.61□□□□□ -0.39
VIPAS39-208ENST00000556412 CLCA1A8K7I4 914 aa12.61□□□□□ -0.39
VIPAS39-208ENST00000556412 SULT2B1O00204 365 aa12.61□□□□□ -0.39
VIPAS39-208ENST00000556412 WDR1O75083 606 aa12.61□□□□□ -0.39
VIPAS39-208ENST00000556412 FKBP6O75344 327 aa12.61□□□□□ -0.39
VIPAS39-208ENST00000556412 PRSS23O95084 383 aa12.61□□□□□ -0.39
VIPAS39-208ENST00000556412 GADD45GO95257 159 aa12.61□□□□□ -0.39
VIPAS39-208ENST00000556412 THRBP10828 461 aa12.61□□□□□ -0.39
VIPAS39-208ENST00000556412 CBLP22681 906 aa12.61□□□□□ -0.39
VIPAS39-208ENST00000556412 FKBP2P26885 142 aaKnown RBP12.61□□□□□ -0.39
VIPAS39-208ENST00000556412 ACVR2AP27037 513 aa12.61□□□□□ -0.39
VIPAS39-208ENST00000556412 IDUAP35475 653 aa12.61□□□□□ -0.39
VIPAS39-208ENST00000556412 DIO1P49895 249 aa12.61□□□□□ -0.39
VIPAS39-208ENST00000556412 ACTR3P61158 418 aa12.61□□□□□ -0.39
VIPAS39-208ENST00000556412 OR7A5Q15622 319 aa12.61□□□□□ -0.39
VIPAS39-208ENST00000556412 ACSF3Q4G176 576 aaPredicted RBP12.61□□□□□ -0.39
VIPAS39-208ENST00000556412 IQCCQ4KMZ1 466 aa12.61□□□□□ -0.39
VIPAS39-208ENST00000556412 RPTNQ6XPR3 784 aa12.61□□□□□ -0.39
VIPAS39-208ENST00000556412 TMEM239Q8WW34 195 aa12.61□□□□□ -0.39
VIPAS39-208ENST00000556412 PRSS27Q9BQR3 290 aa12.61□□□□□ -0.39
VIPAS39-208ENST00000556412 TAPBPLQ9BX59 468 aa12.61□□□□□ -0.39
VIPAS39-208ENST00000556412 PRRG4Q9BZD6 226 aa12.61□□□□□ -0.39
VIPAS39-208ENST00000556412 TP63Q9H3D4 680 aaPredicted RBP12.61□□□□□ -0.39
VIPAS39-208ENST00000556412 COQ10BQ9H8M1 238 aa12.61□□□□□ -0.39
VIPAS39-208ENST00000556412 TIGARQ9NQ88 270 aa12.61□□□□□ -0.39
VIPAS39-208ENST00000556412 HDGFL3Q9Y3E1 203 aa12.61□□□□□ -0.39
VIPAS39-208ENST00000556412 IGHV3-15A0A0B4J1V0 119 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 AHRRA9YTQ3 701 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 GNGT2O14610 69 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 ADAMDEC1O15204 470 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 SYNGR4O95473 234 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 CST1P01037 141 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 GABRA1P14867 456 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 GTF2E2P29084 291 aaKnown RBP12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 MAGEA2P43356 314 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 CLK1P49759 484 aaKnown RBP12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 CSNK2A1P68400 391 aaPredicted RBP12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 EGR4Q05215 589 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 PON3Q15166 354 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 C1orf185Q5T7R7 199 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 ZNF730Q6ZMV8 503 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 Q6ZPB1 254 aaPredicted RBP12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 TMPPEQ6ZT21 453 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 PIWIL3Q7Z3Z3 882 aaKnown RBP12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 RPRMLQ8N4K4 120 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 PIK3C3Q8NEB9 887 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 PFN4Q8NHR9 129 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 STK35Q8TDR2 534 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 PYDC1Q8WXC3 89 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 SLCO4A1Q96BD0 722 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 ADGRG7Q96K78 797 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 EPYCQ99645 322 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 SRXN1Q9BYN0 137 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 YY1AP1Q9H869 796 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 MAN2C1Q9NTJ4 1040 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 CCM2LQ9NUG4 571 aaPredicted RBP12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 C6orf203Q9P0P8 240 aaPredicted RBP12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 SMG1Q96Q15 3661 aaKnown RBP12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 CHD6Q8TD26 2715 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 TRAV36DV7A0A075B6V5 113 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 KDM4EB2RXH2 506 aaPredicted RBP12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 PIP5K1CO60331 668 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 TIPRLO75663 272 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 IMPDH2P12268 514 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 FPR1P21462 350 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 UGT2B15P54855 530 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 SMIM11AP58511 58 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 PPP1R8Q12972 351 aaKnown RBP12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 SF3B4Q15427 424 aaKnown RBP eCLIP12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 TBPL2Q6SJ96 375 aa12.6□□□□□ -0.39
VIPAS39-208ENST00000556412 LINC00114Q6XXX2 140 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms