RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 ZNF524Q96C55 264 aa13.42□□□□□ -0.26
VPS33B-205ENST00000556096 TMCO6Q96DC7 493 aa13.42□□□□□ -0.26
VPS33B-205ENST00000556096 SH3YL1Q96HL8 342 aaPredicted RBP13.42□□□□□ -0.26
VPS33B-205ENST00000556096 CLEC2DQ9UHP7 191 aa13.42□□□□□ -0.26
VPS33B-205ENST00000556096 EXOSC1Q9Y3B2 195 aaKnown RBP13.42□□□□□ -0.26
VPS33B-205ENST00000556096 CDC40O60508 579 aaKnown RBP eCLIP13.41□□□□□ -0.26
VPS33B-205ENST00000556096 ZNF354AO60765 605 aaPredicted RBP13.41□□□□□ -0.26
VPS33B-205ENST00000556096 CSO75390 466 aaKnown RBP13.41□□□□□ -0.26
VPS33B-205ENST00000556096 KLF7O75840 302 aaPredicted RBP13.41□□□□□ -0.26
VPS33B-205ENST00000556096 UMODP07911 640 aa13.41□□□□□ -0.26
VPS33B-205ENST00000556096 MYL12AP19105 171 aa13.41□□□□□ -0.26
VPS33B-205ENST00000556096 ITPKBP27987 946 aa13.41□□□□□ -0.26
VPS33B-205ENST00000556096 TACR3P29371 465 aa13.41□□□□□ -0.26
VPS33B-205ENST00000556096 DYNC1I2Q13409 638 aaKnown RBP13.41□□□□□ -0.26
VPS33B-205ENST00000556096 PCOLCEQ15113 449 aa13.41□□□□□ -0.26
VPS33B-205ENST00000556096 SPHARQ15513 63 aa13.41□□□□□ -0.26
VPS33B-205ENST00000556096 ZNF362Q5T0B9 420 aaPredicted RBP13.41□□□□□ -0.26
VPS33B-205ENST00000556096 ARMC4Q5T2S8 1044 aa13.41□□□□□ -0.26
VPS33B-205ENST00000556096 CDCP2Q5VXM1 449 aa13.41□□□□□ -0.26
VPS33B-205ENST00000556096 ARHGAP11AQ6P4F7 1023 aa13.41□□□□□ -0.26
VPS33B-205ENST00000556096 C16orf47Q6ZP98 133 aaPredicted RBP13.41□□□□□ -0.26
VPS33B-205ENST00000556096 LSRQ86X29 649 aaPredicted RBP13.41□□□□□ -0.26
VPS33B-205ENST00000556096 ELP5Q8TE02 316 aa13.41□□□□□ -0.26
VPS33B-205ENST00000556096 TAPBPLQ9BX59 468 aa13.41□□□□□ -0.26
VPS33B-205ENST00000556096 ZNF700Q9H0M5 742 aa13.41□□□□□ -0.26
VPS33B-205ENST00000556096 CHCHD3Q9NX63 227 aaKnown RBP13.41□□□□□ -0.26
VPS33B-205ENST00000556096 MYOTQ9UBF9 498 aa13.41□□□□□ -0.26
VPS33B-205ENST00000556096 LOXL2Q9Y4K0 774 aa13.41□□□□□ -0.26
VPS33B-205ENST00000556096 PCDHGB6Q9Y5F9 930 aa13.41□□□□□ -0.26
VPS33B-205ENST00000556096 PCDHGA1Q9Y5H4 931 aa13.41□□□□□ -0.26
VPS33B-205ENST00000556096 SPTBN2O15020 2390 aa13.4□□□□□ -0.26
VPS33B-205ENST00000556096 TMEM129A0AVI4 362 aa13.4□□□□□ -0.26
VPS33B-205ENST00000556096 RIIAD1A6NNX1 92 aa13.4□□□□□ -0.26
VPS33B-205ENST00000556096 WWP2O00308 870 aa13.4□□□□□ -0.26
VPS33B-205ENST00000556096 CCRL2O00421 344 aa13.4□□□□□ -0.26
VPS33B-205ENST00000556096 MYL12BO14950 172 aa13.4□□□□□ -0.26
VPS33B-205ENST00000556096 SCO2O43819 266 aa13.4□□□□□ -0.26
VPS33B-205ENST00000556096 PPP1R3DO95685 299 aa13.4□□□□□ -0.26
VPS33B-205ENST00000556096 SCG5P05408 212 aa13.4□□□□□ -0.26
VPS33B-205ENST00000556096 GP1BBP13224 206 aa13.4□□□□□ -0.26
VPS33B-205ENST00000556096 TMED10P49755 219 aaKnown RBP13.4□□□□□ -0.26
VPS33B-205ENST00000556096 PRPS1P60891 318 aa13.4□□□□□ -0.26
VPS33B-205ENST00000556096 RPS4XP62701 263 aaKnown RBP13.4□□□□□ -0.26
VPS33B-205ENST00000556096 C1DQ13901 141 aaKnown RBP13.4□□□□□ -0.26
VPS33B-205ENST00000556096 ZNF74Q16587 644 aa13.4□□□□□ -0.26
VPS33B-205ENST00000556096 ISXQ2M1V0 245 aa13.4□□□□□ -0.26
VPS33B-205ENST00000556096 ANKDD1AQ495B1 522 aa13.4□□□□□ -0.26
VPS33B-205ENST00000556096 SLC35F1Q5T1Q4 408 aa13.4□□□□□ -0.26
VPS33B-205ENST00000556096 PLBD1Q6P4A8 553 aa13.4□□□□□ -0.26
VPS33B-205ENST00000556096 DPY19L2P2Q6ZN68 376 aa13.4□□□□□ -0.26
VPS33B-205ENST00000556096 MEPCEQ7L2J0 689 aaKnown RBP13.4□□□□□ -0.26
VPS33B-205ENST00000556096 CACTIN-AS1Q8N1I8 211 aa13.4□□□□□ -0.26
VPS33B-205ENST00000556096 SLC15A4Q8N697 577 aa13.4□□□□□ -0.26
VPS33B-205ENST00000556096 GALNT6Q8NCL4 622 aa13.4□□□□□ -0.26
VPS33B-205ENST00000556096 BBS1Q8NFJ9 593 aa13.4□□□□□ -0.26
VPS33B-205ENST00000556096 OR2Y1Q8NGV0 311 aa13.4□□□□□ -0.26
VPS33B-205ENST00000556096 B4GALNT2Q8NHY0 566 aa13.4□□□□□ -0.26
VPS33B-205ENST00000556096 GPR119Q8TDV5 335 aa13.4□□□□□ -0.26
VPS33B-205ENST00000556096 THAP3Q8WTV1 239 aaPredicted RBP13.4□□□□□ -0.26
VPS33B-205ENST00000556096 PTP4A1Q93096 173 aa13.4□□□□□ -0.26
VPS33B-205ENST00000556096 KLHDC3Q9BQ90 382 aa13.4□□□□□ -0.26
VPS33B-205ENST00000556096 JAM3Q9BX67 310 aa13.4□□□□□ -0.26
VPS33B-205ENST00000556096 CHRNA9Q9UGM1 479 aa13.4□□□□□ -0.26
VPS33B-205ENST00000556096 PTRH2Q9Y3E5 179 aaKnown RBP13.4□□□□□ -0.26
VPS33B-205ENST00000556096 B3GALT1Q9Y5Z6 326 aa13.4□□□□□ -0.26
VPS33B-205ENST00000556096 IGHV1-45A0A0A0MS14 117 aa13.39□□□□□ -0.27
VPS33B-205ENST00000556096 PRR23D1E9PI22 279 aaPredicted RBP13.39□□□□□ -0.27
VPS33B-205ENST00000556096 AIREO43918 545 aa13.39□□□□□ -0.27
VPS33B-205ENST00000556096 IFNGP01579 166 aa13.39□□□□□ -0.27
VPS33B-205ENST00000556096 IGHEP01854 428 aa13.39□□□□□ -0.27
VPS33B-205ENST00000556096 HSMCR30P0CW71 290 aa13.39□□□□□ -0.27
VPS33B-205ENST00000556096 PRR23D2P0DMB1 279 aaPredicted RBP13.39□□□□□ -0.27
VPS33B-205ENST00000556096 ETV5P41161 510 aa13.39□□□□□ -0.27
VPS33B-205ENST00000556096 ETV1P50549 477 aa13.39□□□□□ -0.27
VPS33B-205ENST00000556096 FBXW4P57775 412 aa13.39□□□□□ -0.27
VPS33B-205ENST00000556096 EGR4Q05215 589 aa13.39□□□□□ -0.27
VPS33B-205ENST00000556096 C17orf67Q0P5P2 114 aa13.39□□□□□ -0.27
VPS33B-205ENST00000556096 ITGADQ13349 1161 aa13.39□□□□□ -0.27
VPS33B-205ENST00000556096 HES3Q5TGS1 186 aa13.39□□□□□ -0.27
VPS33B-205ENST00000556096 NIPAL3Q6P499 406 aa13.39□□□□□ -0.27
VPS33B-205ENST00000556096 LYPD8Q6UX82 237 aa13.39□□□□□ -0.27
VPS33B-205ENST00000556096 LRRC17Q8N6Y2 441 aa13.39□□□□□ -0.27
VPS33B-205ENST00000556096 OR5M3Q8NGP4 307 aa13.39□□□□□ -0.27
VPS33B-205ENST00000556096 SLC22A8Q8TCC7 542 aa13.39□□□□□ -0.27
VPS33B-205ENST00000556096 DUSP19Q8WTR2 217 aa13.39□□□□□ -0.27
VPS33B-205ENST00000556096 OPALINQ96PE5 141 aa13.39□□□□□ -0.27
VPS33B-205ENST00000556096 DEPDC7Q96QD5 511 aa13.39□□□□□ -0.27
VPS33B-205ENST00000556096 GPX7Q96SL4 187 aaPredicted RBP13.39□□□□□ -0.27
VPS33B-205ENST00000556096 DEFB126Q9BYW3 111 aa13.39□□□□□ -0.27
VPS33B-205ENST00000556096 ISYNA1Q9NPH2 558 aa13.39□□□□□ -0.27
VPS33B-205ENST00000556096 KLHL21Q9UJP4 597 aa13.39□□□□□ -0.27
VPS33B-205ENST00000556096 OSGIN1Q9UJX0 560 aa13.39□□□□□ -0.27
VPS33B-205ENST00000556096 PCDHGA3Q9Y5H0 932 aa13.39□□□□□ -0.27
VPS33B-205ENST00000556096 A0A1W2PQ72 361 aa13.39□□□□□ -0.27
VPS33B-205ENST00000556096 FAM183AA6NL82 134 aa13.39□□□□□ -0.27
VPS33B-205ENST00000556096 SOCS6O14544 535 aa13.39□□□□□ -0.27
VPS33B-205ENST00000556096 ARPC3O15145 178 aa13.39□□□□□ -0.27
VPS33B-205ENST00000556096 IDH3BO43837 385 aa13.39□□□□□ -0.27
VPS33B-205ENST00000556096 MT-CO3P00414 261 aa13.39□□□□□ -0.27
VPS33B-205ENST00000556096 IGHA1P01876 353 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms