RNA–Protein interactions for RNA: ENST00000555301.1

CHD8-208, Transcript of chromodomain helicase DNA binding protein 8, human

TSL 2

Gene CHD8, Length 918 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD8-208	ENST00000555301	SGCB	Q16585	318 aa		12.84	□□□□□ -0.35
CHD8-208	ENST00000555301	IQCC	Q4KMZ1	466 aa		12.84	□□□□□ -0.35
CHD8-208	ENST00000555301	EMC4	Q5J8M3	183 aa		12.84	□□□□□ -0.35
CHD8-208	ENST00000555301	HBM	Q6B0K9	141 aa		12.84	□□□□□ -0.35
CHD8-208	ENST00000555301	TTC33	Q6PID6	262 aa	Predicted RBP	12.84	□□□□□ -0.35
CHD8-208	ENST00000555301	TMPPE	Q6ZT21	453 aa		12.84	□□□□□ -0.35
CHD8-208	ENST00000555301	C10orf67	Q8IYJ2	551 aa		12.84	□□□□□ -0.35
CHD8-208	ENST00000555301	PIK3C3	Q8NEB9	887 aa		12.84	□□□□□ -0.35
CHD8-208	ENST00000555301	OR10D3	Q8NH80	312 aa		12.84	□□□□□ -0.35
CHD8-208	ENST00000555301	CANT1	Q8WVQ1	401 aa		12.84	□□□□□ -0.35
CHD8-208	ENST00000555301	HS6ST2	Q96MM7	605 aa		12.84	□□□□□ -0.35
CHD8-208	ENST00000555301	EPYC	Q99645	322 aa		12.84	□□□□□ -0.35
CHD8-208	ENST00000555301	SLC19A3	Q9BZV2	496 aa		12.84	□□□□□ -0.35
CHD8-208	ENST00000555301	OR11A1	Q9GZK7	315 aa		12.84	□□□□□ -0.35
CHD8-208	ENST00000555301	NMNAT1	Q9HAN9	279 aa	Predicted RBP	12.84	□□□□□ -0.35
CHD8-208	ENST00000555301	TRAPPC4	Q9Y296	219 aa		12.84	□□□□□ -0.35
CHD8-208	ENST00000555301	COL6A6	A6NMZ7	2263 aa		12.84	□□□□□ -0.35
CHD8-208	ENST00000555301	ZC3H12D	A2A288	527 aa	Known RBP	12.83	□□□□□ -0.36
CHD8-208	ENST00000555301	ERICH4	A6NGS2	130 aa		12.83	□□□□□ -0.36
CHD8-208	ENST00000555301		H0YC42	278 aa		12.83	□□□□□ -0.36
CHD8-208	ENST00000555301	FFAR1	O14842	300 aa		12.83	□□□□□ -0.36
CHD8-208	ENST00000555301	DNPH1	O43598	174 aa		12.83	□□□□□ -0.36
CHD8-208	ENST00000555301	OR2T1	O43869	369 aa		12.83	□□□□□ -0.36
CHD8-208	ENST00000555301	NPIPB7	O75200	414 aa		12.83	□□□□□ -0.36
CHD8-208	ENST00000555301	AHSA1	O95433	338 aa		12.83	□□□□□ -0.36
CHD8-208	ENST00000555301	PMS2P2	O95744	297 aa		12.83	□□□□□ -0.36
CHD8-208	ENST00000555301	H1F0	P07305	194 aa	Known RBP	12.83	□□□□□ -0.36
CHD8-208	ENST00000555301	IDUA	P35475	653 aa		12.83	□□□□□ -0.36
CHD8-208	ENST00000555301	TPD52	P55327	224 aa	Predicted RBP	12.83	□□□□□ -0.36
CHD8-208	ENST00000555301	RAC3	P60763	192 aa		12.83	□□□□□ -0.36
CHD8-208	ENST00000555301	ACTR3	P61158	418 aa		12.83	□□□□□ -0.36
CHD8-208	ENST00000555301	MYBPH	Q13203	477 aa		12.83	□□□□□ -0.36
CHD8-208	ENST00000555301	ACSF3	Q4G176	576 aa	Predicted RBP	12.83	□□□□□ -0.36
CHD8-208	ENST00000555301	C1orf185	Q5T7R7	199 aa		12.83	□□□□□ -0.36
CHD8-208	ENST00000555301	C1orf140	Q5VVS0	124 aa		12.83	□□□□□ -0.36
CHD8-208	ENST00000555301	OSTF1	Q92882	214 aa		12.83	□□□□□ -0.36
CHD8-208	ENST00000555301	CPNE4	Q96A23	557 aa	Predicted RBP	12.83	□□□□□ -0.36
CHD8-208	ENST00000555301	ARL5B	Q96KC2	179 aa		12.83	□□□□□ -0.36
CHD8-208	ENST00000555301	UCN2	Q96RP3	112 aa		12.83	□□□□□ -0.36
CHD8-208	ENST00000555301	TUBA1C	Q9BQE3	449 aa		12.83	□□□□□ -0.36
CHD8-208	ENST00000555301	PRSS27	Q9BQR3	290 aa		12.83	□□□□□ -0.36
CHD8-208	ENST00000555301	ZNF426	Q9BUY5	554 aa		12.83	□□□□□ -0.36
CHD8-208	ENST00000555301	CHID1	Q9BWS9	393 aa		12.83	□□□□□ -0.36
CHD8-208	ENST00000555301	COQ10B	Q9H8M1	238 aa		12.83	□□□□□ -0.36
CHD8-208	ENST00000555301	CALHM2	Q9HA72	323 aa		12.83	□□□□□ -0.36
CHD8-208	ENST00000555301	CCM2L	Q9NUG4	571 aa	Predicted RBP	12.83	□□□□□ -0.36
CHD8-208	ENST00000555301	RHCG	Q9UBD6	479 aa		12.83	□□□□□ -0.36
CHD8-208	ENST00000555301	TINAG	Q9UJW2	476 aa		12.83	□□□□□ -0.36
CHD8-208	ENST00000555301	IGKV1D-42	A0A075B6H8	117 aa		12.82	□□□□□ -0.36
CHD8-208	ENST00000555301	TRAV36DV7	A0A075B6V5	113 aa		12.82	□□□□□ -0.36
CHD8-208	ENST00000555301		A0A1B0GUH1	482 aa		12.82	□□□□□ -0.36
CHD8-208	ENST00000555301		A0A1W2PNR3	127 aa		12.82	□□□□□ -0.36
CHD8-208	ENST00000555301		A0A1W2PRQ8	180 aa		12.82	□□□□□ -0.36
CHD8-208	ENST00000555301	CD8B2	A6NJW9	211 aa		12.82	□□□□□ -0.36
CHD8-208	ENST00000555301	CLCA1	A8K7I4	914 aa		12.82	□□□□□ -0.36
CHD8-208	ENST00000555301	SULT2B1	O00204	365 aa		12.82	□□□□□ -0.36
CHD8-208	ENST00000555301	CXCL13	O43927	109 aa		12.82	□□□□□ -0.36
CHD8-208	ENST00000555301	DIRAS1	O95057	198 aa		12.82	□□□□□ -0.36
CHD8-208	ENST00000555301	DIO1	P49895	249 aa		12.82	□□□□□ -0.36
CHD8-208	ENST00000555301	SPIB	Q01892	262 aa		12.82	□□□□□ -0.36
CHD8-208	ENST00000555301	EGR4	Q05215	589 aa		12.82	□□□□□ -0.36
CHD8-208	ENST00000555301	CCNI	Q14094	377 aa		12.82	□□□□□ -0.36
CHD8-208	ENST00000555301	DGCR6	Q14129	220 aa		12.82	□□□□□ -0.36
CHD8-208	ENST00000555301	EIF2S3L	Q2VIR3	472 aa	Known RBP	12.82	□□□□□ -0.36
CHD8-208	ENST00000555301	NSUN5P2	Q63ZY6	315 aa		12.82	□□□□□ -0.36
CHD8-208	ENST00000555301	B3GNT6	Q6ZMB0	384 aa		12.82	□□□□□ -0.36
CHD8-208	ENST00000555301	WDR88	Q6ZMY6	472 aa		12.82	□□□□□ -0.36
CHD8-208	ENST00000555301	ADGRE4P	Q86SQ3	457 aa		12.82	□□□□□ -0.36
CHD8-208	ENST00000555301	NKAIN4	Q8IVV8	208 aa		12.82	□□□□□ -0.36
CHD8-208	ENST00000555301	PAPD5	Q8NDF8	572 aa	Known RBP	12.82	□□□□□ -0.36
CHD8-208	ENST00000555301	OR6S1	Q8NH40	331 aa		12.82	□□□□□ -0.36
CHD8-208	ENST00000555301	PRR7	Q8TB68	274 aa		12.82	□□□□□ -0.36
CHD8-208	ENST00000555301	TMEM239	Q8WW34	195 aa		12.82	□□□□□ -0.36
CHD8-208	ENST00000555301	ZHX1-C8orf76	Q96EF9	292 aa		12.82	□□□□□ -0.36
CHD8-208	ENST00000555301	DUS3L	Q96G46	650 aa	Known RBP	12.82	□□□□□ -0.36
CHD8-208	ENST00000555301	DHRS1	Q96LJ7	313 aa		12.82	□□□□□ -0.36
CHD8-208	ENST00000555301	TRIB1	Q96RU8	372 aa		12.82	□□□□□ -0.36
CHD8-208	ENST00000555301	TAPBPL	Q9BX59	468 aa		12.82	□□□□□ -0.36
CHD8-208	ENST00000555301	KLHL4	Q9C0H6	718 aa		12.82	□□□□□ -0.36
CHD8-208	ENST00000555301	SH3BGRL2	Q9UJC5	107 aa		12.82	□□□□□ -0.36
CHD8-208	ENST00000555301	MCTS1	Q9ULC4	181 aa	Known RBP	12.82	□□□□□ -0.36
CHD8-208	ENST00000555301	ZNF175	Q9Y473	711 aa		12.82	□□□□□ -0.36
CHD8-208	ENST00000555301	CHD6	Q8TD26	2715 aa		12.82	□□□□□ -0.36
CHD8-208	ENST00000555301	HTR3E	A5X5Y0	456 aa		12.81	□□□□□ -0.36
CHD8-208	ENST00000555301		E9PLN8	166 aa		12.81	□□□□□ -0.36
CHD8-208	ENST00000555301	EIF1B	O60739	113 aa	Known RBP	12.81	□□□□□ -0.36
CHD8-208	ENST00000555301	FKBP6	O75344	327 aa		12.81	□□□□□ -0.36
CHD8-208	ENST00000555301	KRT36	O76013	467 aa		12.81	□□□□□ -0.36
CHD8-208	ENST00000555301	GADD45G	O95257	159 aa		12.81	□□□□□ -0.36
CHD8-208	ENST00000555301	SYNGR4	O95473	234 aa		12.81	□□□□□ -0.36
CHD8-208	ENST00000555301	IGF2	P01344	180 aa		12.81	□□□□□ -0.36
CHD8-208	ENST00000555301	FCGR2A	P12318	317 aa		12.81	□□□□□ -0.36
CHD8-208	ENST00000555301	RRM2	P31350	389 aa		12.81	□□□□□ -0.36
CHD8-208	ENST00000555301	UQCRFS1	P47985	274 aa		12.81	□□□□□ -0.36
CHD8-208	ENST00000555301	ERF	P50548	548 aa		12.81	□□□□□ -0.36
CHD8-208	ENST00000555301	SLC35A1	P78382	337 aa		12.81	□□□□□ -0.36
CHD8-208	ENST00000555301	KPNB1	Q14974	876 aa	Known RBP	12.81	□□□□□ -0.36
CHD8-208	ENST00000555301	MFSD13A	Q14CX5	517 aa		12.81	□□□□□ -0.36
CHD8-208	ENST00000555301	PON3	Q15166	354 aa		12.81	□□□□□ -0.36
CHD8-208	ENST00000555301	FAM69A	Q5T7M9	428 aa		12.81	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms