RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 FGD2Q7Z6J4 655 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 VASH2Q86V25 355 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 CLECL1Q8IZS7 167 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 D2HGDHQ8N465 521 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 OR52I1Q8NGK6 324 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 SELENOMQ8WWX9 145 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 CMTM7Q96FZ5 175 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 CD180Q99467 661 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 DPH7Q9BTV6 452 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 DDA1Q9BW61 102 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 SORBS1Q9BX66 1292 aaKnown RBP7.07□□□□□ -1.28
LIMA1-216ENST00000552909 SLC19A3Q9BZV2 496 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 CHST8Q9H2A9 424 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 ZCCHC4Q9H5U6 513 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 AKIRIN1Q9H9L7 192 aaPredicted RBP7.07□□□□□ -1.28
LIMA1-216ENST00000552909 NMNAT1Q9HAN9 279 aaPredicted RBP7.07□□□□□ -1.28
LIMA1-216ENST00000552909 SLAMF7Q9NQ25 335 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 ENAMQ9NRM1 1142 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 C1GALT1Q9NS00 363 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 FGF21Q9NSA1 209 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 ACER3Q9NUN7 267 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 FAM120CQ9NX05 1096 aaKnown RBP7.07□□□□□ -1.28
LIMA1-216ENST00000552909 MLXQ9UH92 298 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 CYB5R1Q9UHQ9 305 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 FBXL2Q9UKC9 423 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 SSUH2Q9Y2M2 353 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 SF3B6Q9Y3B4 125 aaKnown RBP7.07□□□□□ -1.28
LIMA1-216ENST00000552909 PCDHGA9Q9Y5G4 932 aaKnown RBP7.07□□□□□ -1.28
LIMA1-216ENST00000552909 TRDV1A0A1B0GX56 115 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 MPTX1A8MV57 137 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 E7EQ34 232 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 PRICKLE3O43900 615 aaPredicted RBP7.06□□□□□ -1.28
LIMA1-216ENST00000552909 PRKYO43930 277 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 SELENOFO60613 162 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 GCM2O75603 506 aaPredicted RBP7.06□□□□□ -1.28
LIMA1-216ENST00000552909 STK17BO94768 372 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 CBX7O95931 251 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 OSMP13725 252 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 COX7A2P14406 83 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 WT1P19544 449 aaPredicted RBP7.06□□□□□ -1.28
LIMA1-216ENST00000552909 AHCYP23526 432 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 HMGA2P52926 109 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 TBPL1P62380 186 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 DOC2AQ14183 400 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 GANABQ14697 944 aaKnown RBP7.06□□□□□ -1.28
LIMA1-216ENST00000552909 RGNQ15493 299 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 TSC22D1Q15714 1073 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 OCLNQ16625 522 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 MPEG1Q2M385 716 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 PABPC1L2AQ5JQF8 200 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 PWWP2BQ6NUJ5 590 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 ATRAIDQ6UW56 229 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 CEACAM20Q6UY09 585 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 ZNF704Q6ZNC4 412 aaPredicted RBP7.06□□□□□ -1.28
LIMA1-216ENST00000552909 LRRC69Q6ZNQ3 347 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 LRRC56Q8IYG6 542 aaPredicted RBP7.06□□□□□ -1.28
LIMA1-216ENST00000552909 OR8J1Q8NGP2 316 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 MOSPD2Q8NHP6 518 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 COQ8AQ8NI60 647 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 ACOT12Q8WYK0 555 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 NKD1Q969G9 470 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 NEIL2Q969S2 332 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 SPRTNQ9H040 489 aaPredicted RBP7.06□□□□□ -1.28
LIMA1-216ENST00000552909 PRM3Q9NNZ6 103 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 ISYNA1Q9NPH2 558 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 SOHLH2Q9NX45 425 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 NPTNQ9Y639 398 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 DSPPQ9NZW4 1301 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 PRRC2CQ9Y520 2896 aaKnown RBP7.06□□□□□ -1.28
LIMA1-216ENST00000552909 A0A1W2PPV9 198 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 TCRBV16S1A1N1A0A5B0 115 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 PQLC2LA1A4F0 135 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 GABRR3A8MPY1 467 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 G3V3Q6 166 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 H3BN98 237 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 STMND1H3BQB6 276 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 L7N2F9 121 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 LRRTM2O43300 516 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 EEF1E1O43324 174 aaKnown RBP7.06□□□□□ -1.28
LIMA1-216ENST00000552909 SCN2BO60939 215 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 SNAPC5O75971 98 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 RGS11O94810 467 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 ADAP00813 363 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 LIPCP11150 499 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 FGF5P12034 268 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 PRPH2P23942 346 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 HSD17B2P37059 387 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 XCR1P46094 333 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 ARL4DP49703 201 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 WNT3P56703 355 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 FGL1Q08830 312 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 IL11RAQ14626 422 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 GSG1Q2KHT4 349 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 DEFB110Q30KQ9 67 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 TCTE1Q5JU00 501 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 PDSS1Q5T2R2 415 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 HACD4Q5VWC8 232 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 LIPJQ5W064 366 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 C12orf73Q69YU5 71 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 CD200R1LQ6Q8B3 271 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms