RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 OR52I2Q8NH67 350 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 WFIKKN2Q8TEU8 576 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 BPIFA2Q96DR5 249 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 SLC25A38Q96DW6 304 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 ZMYND19Q96E35 227 aaPredicted RBP5□□□□□ -1.61
LIMA1-212ENST00000552491 KLHL15Q96M94 604 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 LINC00052Q96N35 136 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 TNFRSF13CQ96RJ3 184 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 REG4Q9BYZ8 158 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 GSX2Q9BZM3 304 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 FKRPQ9H9S5 495 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 IL21RQ9HBE5 538 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 HRASLSQ9HDD0 168 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 RPS6KB2Q9UBS0 482 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 KLK11Q9UBX7 282 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 SERGEFQ9UGK8 458 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 SPATA2Q9UM82 520 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 CAMK2AQ9UQM7 478 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 SLC35A3Q9Y2D2 325 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 SLC27A6Q9Y2P4 619 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 MAB21L2Q9Y586 359 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 ZNF780BQ9Y6R6 833 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 SPEGQ15772 3267 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 TUBAL3A6NHL2 446 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 PRR32B1ATL7 298 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 KHNYNO15037 678 aaKnown RBP4.99□□□□□ -1.61
LIMA1-212ENST00000552491 ARPC1BO15143 372 aaKnown RBP4.99□□□□□ -1.61
LIMA1-212ENST00000552491 BET1O15155 118 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 OGG1O15527 345 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 FLRT2O43155 660 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 PEX14O75381 377 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 STX11O75558 287 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 GATBO75879 557 aaKnown RBP4.99□□□□□ -1.61
LIMA1-212ENST00000552491 RCBTB2O95199 551 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 PCDH8O95206 1070 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 FGF19O95750 216 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 AGR2O95994 175 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 PAK4O96013 591 aaPredicted RBP4.99□□□□□ -1.61
LIMA1-212ENST00000552491 SERPINA3P01011 423 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 ALDOBP05062 364 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 UCHL1P09936 223 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 ACSM4P0C7M7 580 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 ZNF888P0CJ79 500 aaPredicted RBP4.99□□□□□ -1.61
LIMA1-212ENST00000552491 CSF2RAP15509 400 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 RPS4Y1P22090 263 aaKnown RBP4.99□□□□□ -1.61
LIMA1-212ENST00000552491 LCN1P31025 176 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 PPM1AP35813 382 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 NAA10P41227 235 aaPredicted RBP4.99□□□□□ -1.61
LIMA1-212ENST00000552491 TSFMP43897 325 aaKnown RBP4.99□□□□□ -1.61
LIMA1-212ENST00000552491 GDI2P50395 445 aaKnown RBP4.99□□□□□ -1.61
LIMA1-212ENST00000552491 EPHA4P54764 986 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 TSPAN5P62079 268 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 RUNX2Q13950 521 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 OPCMLQ14982 345 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 CDK5R1Q15078 307 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 CSRP2Q16527 193 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 TCTE1Q5JU00 501 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 SFRP5Q5T4F7 317 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 HES5Q5TA89 166 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 ZNF425Q6IV72 752 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 RPL13AP3Q6NVV1 102 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 FIGNL1Q6PIW4 674 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 SLC39A5Q6ZMH5 540 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 TMPRSS11FQ6ZWK6 438 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 PRSS42Q7Z5A4 293 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 SPRED2Q7Z698 418 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 ADGRG3Q86Y34 549 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 GRAMD2AQ8IUY3 354 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 OR2L13Q8N349 312 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 HDDC3Q8N4P3 179 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 FAM98AQ8NCA5 519 aaKnown RBP4.99□□□□□ -1.61
LIMA1-212ENST00000552491 GRHL3Q8TE85 626 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 RBPMSQ93062 196 aaKnown RBP4.99□□□□□ -1.61
LIMA1-212ENST00000552491 SFXN2Q96NB2 322 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 MS4A4EQ96PG1 132 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 ERMAPQ96PL5 475 aaPredicted RBP4.99□□□□□ -1.61
LIMA1-212ENST00000552491 DMRTA2Q96SC8 542 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 ARPC5LQ9BPX5 153 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 REPIN1Q9BWE0 567 aaKnown RBP4.99□□□□□ -1.61
LIMA1-212ENST00000552491 ZNF350Q9GZX5 532 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 SPRTNQ9H040 489 aaPredicted RBP4.99□□□□□ -1.61
LIMA1-212ENST00000552491 SLC25A18Q9H1K4 315 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 WDR26Q9H7D7 661 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 CACYBPQ9HB71 228 aaKnown RBP4.99□□□□□ -1.61
LIMA1-212ENST00000552491 TRPV4Q9HBA0 871 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 ADAP2Q9NPF8 381 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 POT1Q9NUX5 634 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 C2orf42Q9NWW7 574 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 LYARQ9NX58 379 aaKnown RBP4.99□□□□□ -1.61
LIMA1-212ENST00000552491 FLRT3Q9NZU0 649 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 NTMQ9P121 344 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 POMT2Q9UKY4 750 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 TBX21Q9UL17 535 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 ACSL5Q9ULC5 683 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 COPS3Q9UNS2 423 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 SZT2Q5T011 3432 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 TBC1D3KA0A087X1G2 549 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 PLSCR5A0PG75 271 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 TBC1D3BA6NDS4 549 aa4.99□□□□□ -1.61
LIMA1-212ENST00000552491 TBC1D3FA6NER0 549 aaPredicted RBP4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms