RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 PCP4L1A6NKN8 68 aa2.98□□□□□ -1.93
VPS29-205ENST00000548539 TRIM64CA6NLI5 447 aa2.98□□□□□ -1.93
VPS29-205ENST00000548539 IDSB3KWA1 339 aa2.98□□□□□ -1.93
VPS29-205ENST00000548539 HIP1O00291 1037 aa2.98□□□□□ -1.93
VPS29-205ENST00000548539 MBTPS2O43462 519 aa2.98□□□□□ -1.93
VPS29-205ENST00000548539 RAMP3O60896 148 aa2.98□□□□□ -1.93
VPS29-205ENST00000548539 SNX4O95219 450 aa2.98□□□□□ -1.93
VPS29-205ENST00000548539 LYPD3O95274 346 aa2.98□□□□□ -1.93
VPS29-205ENST00000548539 STAMBPO95630 424 aa2.98□□□□□ -1.93
VPS29-205ENST00000548539 IGKV3-15P01624 115 aa2.98□□□□□ -1.93
VPS29-205ENST00000548539 CCR1P32246 355 aa2.98□□□□□ -1.93
VPS29-205ENST00000548539 QARSP47897 775 aaKnown RBP2.98□□□□□ -1.93
VPS29-205ENST00000548539 PKNOX1P55347 436 aa2.98□□□□□ -1.93
VPS29-205ENST00000548539 EGFEM1PQ0D2K5 195 aa2.98□□□□□ -1.93
VPS29-205ENST00000548539 VGLL4Q14135 290 aa2.98□□□□□ -1.93
VPS29-205ENST00000548539 GRB7Q14451 532 aa2.98□□□□□ -1.93
VPS29-205ENST00000548539 DPYSL2Q16555 572 aa2.98□□□□□ -1.93
VPS29-205ENST00000548539 KYAT1Q16773 422 aa2.98□□□□□ -1.93
VPS29-205ENST00000548539 ISXQ2M1V0 245 aa2.98□□□□□ -1.93
VPS29-205ENST00000548539 NSUN5P1Q3KNT7 163 aa2.98□□□□□ -1.93
VPS29-205ENST00000548539 RABL6Q3YEC7 729 aaPredicted RBP2.98□□□□□ -1.93
VPS29-205ENST00000548539 RNF212Q495C1 297 aa2.98□□□□□ -1.93
VPS29-205ENST00000548539 CFAP221Q4G0U5 840 aa2.98□□□□□ -1.93
VPS29-205ENST00000548539 PHYHD1Q5SRE7 291 aa2.98□□□□□ -1.93
VPS29-205ENST00000548539 OR2A2Q6IF42 318 aa2.98□□□□□ -1.93
VPS29-205ENST00000548539 PGAP1Q75T13 922 aa2.98□□□□□ -1.93
VPS29-205ENST00000548539 TMEM179BQ7Z7N9 219 aa2.98□□□□□ -1.93
VPS29-205ENST00000548539 TMEM252Q8N6L7 170 aa2.98□□□□□ -1.93
VPS29-205ENST00000548539 ZNF564Q8TBZ8 553 aaPredicted RBP2.98□□□□□ -1.93
VPS29-205ENST00000548539 FAM110BQ8TC76 370 aa2.98□□□□□ -1.93
VPS29-205ENST00000548539 ST8SIA1Q92185 356 aa2.98□□□□□ -1.93
VPS29-205ENST00000548539 FBXO32Q969P5 355 aa2.98□□□□□ -1.93
VPS29-205ENST00000548539 UBE2E3Q969T4 207 aa2.98□□□□□ -1.93
VPS29-205ENST00000548539 CLCC1Q96S66 551 aa2.98□□□□□ -1.93
VPS29-205ENST00000548539 NPY6RQ99463 290 aa2.98□□□□□ -1.93
VPS29-205ENST00000548539 ROPN1BQ9BZX4 212 aaPredicted RBP2.98□□□□□ -1.93
VPS29-205ENST00000548539 RBKSQ9H477 322 aa2.98□□□□□ -1.93
VPS29-205ENST00000548539 EHD1Q9H4M9 534 aa2.98□□□□□ -1.93
VPS29-205ENST00000548539 YY1AP1Q9H869 796 aa2.98□□□□□ -1.93
VPS29-205ENST00000548539 COPS3Q9UNS2 423 aa2.98□□□□□ -1.93
VPS29-205ENST00000548539 PIGLQ9Y2B2 252 aa2.98□□□□□ -1.93
VPS29-205ENST00000548539 IKBKGQ9Y6K9 419 aa2.98□□□□□ -1.93
VPS29-205ENST00000548539 A0A0G2JRQ6 117 aa2.97□□□□□ -1.93
VPS29-205ENST00000548539 EPOPA6NHQ4 379 aa2.97□□□□□ -1.93
VPS29-205ENST00000548539 SNTNA6NMZ2 147 aa2.97□□□□□ -1.93
VPS29-205ENST00000548539 E7ENQ6 273 aa2.97□□□□□ -1.93
VPS29-205ENST00000548539 HAT1O14929 419 aa2.97□□□□□ -1.93
VPS29-205ENST00000548539 FCMRO60667 390 aa2.97□□□□□ -1.93
VPS29-205ENST00000548539 ECI2O75521 394 aa2.97□□□□□ -1.93
VPS29-205ENST00000548539 OXSR1O95747 527 aaPredicted RBP2.97□□□□□ -1.93
VPS29-205ENST00000548539 IGHG4P01861 327 aa2.97□□□□□ -1.93
VPS29-205ENST00000548539 SEMG1P04279 462 aa2.97□□□□□ -1.93
VPS29-205ENST00000548539 ZNF853P0CG23 659 aa2.97□□□□□ -1.93
VPS29-205ENST00000548539 COX5AP20674 150 aa2.97□□□□□ -1.93
VPS29-205ENST00000548539 RBMXP38159 391 aaKnown RBP2.97□□□□□ -1.93
VPS29-205ENST00000548539 DUSP3P51452 185 aaPredicted RBP2.97□□□□□ -1.93
VPS29-205ENST00000548539 PLK1P53350 603 aa2.97□□□□□ -1.93
VPS29-205ENST00000548539 STX17P56962 302 aa2.97□□□□□ -1.93
VPS29-205ENST00000548539 PLD1Q13393 1074 aa2.97□□□□□ -1.93
VPS29-205ENST00000548539 DUSP7Q16829 419 aa2.97□□□□□ -1.93
VPS29-205ENST00000548539 KCTD21Q4G0X4 260 aa2.97□□□□□ -1.93
VPS29-205ENST00000548539 OR2G6Q5TZ20 316 aa2.97□□□□□ -1.93
VPS29-205ENST00000548539 UNQ9370/PRO34162Q6UXP9 181 aa2.97□□□□□ -1.93
VPS29-205ENST00000548539 FAM220AQ7Z4H9 259 aa2.97□□□□□ -1.93
VPS29-205ENST00000548539 NBPF5PQ86XG9 351 aaPredicted RBP2.97□□□□□ -1.93
VPS29-205ENST00000548539 ZNF584Q8IVC4 421 aa2.97□□□□□ -1.93
VPS29-205ENST00000548539 ZNF100Q8IYN0 542 aa2.97□□□□□ -1.93
VPS29-205ENST00000548539 ALLCQ8N6M5 410 aa2.97□□□□□ -1.93
VPS29-205ENST00000548539 OR52H1Q8NGJ2 320 aa2.97□□□□□ -1.93
VPS29-205ENST00000548539 OR52I1Q8NGK6 324 aa2.97□□□□□ -1.93
VPS29-205ENST00000548539 ANKRD49Q8WVL7 239 aa2.97□□□□□ -1.93
VPS29-205ENST00000548539 HTR3CQ8WXA8 447 aa2.97□□□□□ -1.93
VPS29-205ENST00000548539 TRIM62Q9BVG3 475 aa2.97□□□□□ -1.93
VPS29-205ENST00000548539 PARD6BQ9BYG5 372 aa2.97□□□□□ -1.93
VPS29-205ENST00000548539 RAB34Q9BZG1 259 aa2.97□□□□□ -1.93
VPS29-205ENST00000548539 SGK2Q9HBY8 427 aa2.97□□□□□ -1.93
VPS29-205ENST00000548539 PLSCR3Q9NRY6 295 aa2.97□□□□□ -1.93
VPS29-205ENST00000548539 TREM2Q9NZC2 230 aa2.97□□□□□ -1.93
VPS29-205ENST00000548539 BFARQ9NZS9 450 aa2.97□□□□□ -1.93
VPS29-205ENST00000548539 TMEM9Q9P0T7 183 aa2.97□□□□□ -1.93
VPS29-205ENST00000548539 SEC14L3Q9UDX4 400 aa2.97□□□□□ -1.93
VPS29-205ENST00000548539 ABCG2Q9UNQ0 655 aa2.97□□□□□ -1.93
VPS29-205ENST00000548539 IFT52Q9Y366 437 aa2.97□□□□□ -1.93
VPS29-205ENST00000548539 PNPLA6Q8IY17 1366 aa2.97□□□□□ -1.93
VPS29-205ENST00000548539 IGKV1D-8A0A087WSZ0 117 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 IQANK1A0A1B0GTG1 560 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 TCRBV9S1A1TA0A576 114 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 HELTA6NFD8 242 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 A8MXQ7 604 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 DCTN6O00399 190 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 PRKAB2O43741 272 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 TSPAN12O95859 305 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 NCF2P19878 526 aaPredicted RBP2.96□□□□□ -1.94
VPS29-205ENST00000548539 NPR2P20594 1047 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 CALCRP30988 508 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 SHMT2P34897 504 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 PTGDSP41222 190 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 GSSP48637 474 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 CDK16Q00536 496 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 ZNF45Q02386 682 aa2.96□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms