RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 KLHL24Q6TFL4 600 aa11.06□□□□□ -0.64
SCAF11-208ENST00000546534 UGT2A3Q6UWM9 527 aa11.06□□□□□ -0.64
SCAF11-208ENST00000546534 TIFABQ6ZNK6 161 aa11.06□□□□□ -0.64
SCAF11-208ENST00000546534 PEG10Q86TG7 708 aaKnown RBP11.06□□□□□ -0.64
SCAF11-208ENST00000546534 ZNF786Q8N393 782 aa11.06□□□□□ -0.64
SCAF11-208ENST00000546534 OR2T11Q8NH01 316 aa11.06□□□□□ -0.64
SCAF11-208ENST00000546534 ZNF418Q8TF45 676 aaPredicted RBP11.06□□□□□ -0.64
SCAF11-208ENST00000546534 FAM216AQ8WUB2 273 aa11.06□□□□□ -0.64
SCAF11-208ENST00000546534 NEU4Q8WWR8 484 aaPredicted RBP11.06□□□□□ -0.64
SCAF11-208ENST00000546534 SLC38A2Q96QD8 506 aa11.06□□□□□ -0.64
SCAF11-208ENST00000546534 SDF2Q99470 211 aa11.06□□□□□ -0.64
SCAF11-208ENST00000546534 KCNS3Q9BQ31 491 aa11.06□□□□□ -0.64
SCAF11-208ENST00000546534 KATNB1Q9BVA0 655 aa11.06□□□□□ -0.64
SCAF11-208ENST00000546534 CCDC106Q9BWC9 280 aa11.06□□□□□ -0.64
SCAF11-208ENST00000546534 PARPBPQ9NWS1 579 aa11.06□□□□□ -0.64
SCAF11-208ENST00000546534 CHRNA9Q9UGM1 479 aa11.06□□□□□ -0.64
SCAF11-208ENST00000546534 TGP01266 2768 aa11.05□□□□□ -0.64
SCAF11-208ENST00000546534 LYNX1G3V0Z9 82 aa11.05□□□□□ -0.64
SCAF11-208ENST00000546534 SLC28A1O00337 649 aa11.05□□□□□ -0.64
SCAF11-208ENST00000546534 DNPH1O43598 174 aa11.05□□□□□ -0.64
SCAF11-208ENST00000546534 CRYAAP02489 173 aa11.05□□□□□ -0.64
SCAF11-208ENST00000546534 GSTA1P08263 222 aa11.05□□□□□ -0.64
SCAF11-208ENST00000546534 KRT16P08779 473 aa11.05□□□□□ -0.64
SCAF11-208ENST00000546534 LYNX1P0DP58 116 aa11.05□□□□□ -0.64
SCAF11-208ENST00000546534 UROSP10746 265 aa11.05□□□□□ -0.64
SCAF11-208ENST00000546534 IFNGR1P15260 489 aa11.05□□□□□ -0.64
SCAF11-208ENST00000546534 CREB1P16220 341 aa11.05□□□□□ -0.64
SCAF11-208ENST00000546534 H3F3AP84243 136 aa11.05□□□□□ -0.64
SCAF11-208ENST00000546534 GPR68Q15743 365 aa11.05□□□□□ -0.64
SCAF11-208ENST00000546534 ZNF141Q15928 474 aa11.05□□□□□ -0.64
SCAF11-208ENST00000546534 PRR31Q5SQ13 230 aa11.05□□□□□ -0.64
SCAF11-208ENST00000546534 CLEC6AQ6EIG7 209 aa11.05□□□□□ -0.64
SCAF11-208ENST00000546534 FRMD7Q6ZUT3 714 aa11.05□□□□□ -0.64
SCAF11-208ENST00000546534 OLIG3Q7RTU3 272 aa11.05□□□□□ -0.64
SCAF11-208ENST00000546534 LCA5Q86VQ0 697 aa11.05□□□□□ -0.64
SCAF11-208ENST00000546534 GLCCI1Q86VQ1 547 aa11.05□□□□□ -0.64
SCAF11-208ENST00000546534 LSRQ86X29 649 aaPredicted RBP11.05□□□□□ -0.64
SCAF11-208ENST00000546534 OR56A1Q8NGH5 318 aa11.05□□□□□ -0.64
SCAF11-208ENST00000546534 OR5D16Q8NGK9 328 aa11.05□□□□□ -0.64
SCAF11-208ENST00000546534 WDR60Q8WVS4 1066 aa11.05□□□□□ -0.64
SCAF11-208ENST00000546534 MTERF3Q96E29 417 aa11.05□□□□□ -0.64
SCAF11-208ENST00000546534 BOD1Q96IK1 185 aa11.05□□□□□ -0.64
SCAF11-208ENST00000546534 OR7D2Q96RA2 312 aa11.05□□□□□ -0.64
SCAF11-208ENST00000546534 NMUR2Q9GZQ4 415 aa11.05□□□□□ -0.64
SCAF11-208ENST00000546534 SAP130Q9H0E3 1048 aa11.05□□□□□ -0.64
SCAF11-208ENST00000546534 SLC9A8Q9Y2E8 581 aa11.05□□□□□ -0.64
SCAF11-208ENST00000546534 HDGFL3Q9Y3E1 203 aa11.05□□□□□ -0.64
SCAF11-208ENST00000546534 PCDHB14Q9Y5E9 798 aa11.05□□□□□ -0.64
SCAF11-208ENST00000546534 SPIN1Q9Y657 262 aaPredicted RBP11.05□□□□□ -0.64
SCAF11-208ENST00000546534 G3V2L1 256 aa11.04□□□□□ -0.64
SCAF11-208ENST00000546534 H3BQF6 201 aa11.04□□□□□ -0.64
SCAF11-208ENST00000546534 TRIM77I1YAP6 450 aa11.04□□□□□ -0.64
SCAF11-208ENST00000546534 hCG_2039718K7EN88 272 aa11.04□□□□□ -0.64
SCAF11-208ENST00000546534 FCMRO60667 390 aa11.04□□□□□ -0.64
SCAF11-208ENST00000546534 ERCC1P07992 297 aaPredicted RBP11.04□□□□□ -0.64
SCAF11-208ENST00000546534 IGFBP1P08833 259 aaPredicted RBP11.04□□□□□ -0.64
SCAF11-208ENST00000546534 CCNA2P20248 432 aa11.04□□□□□ -0.64
SCAF11-208ENST00000546534 GCAP28676 217 aa11.04□□□□□ -0.64
SCAF11-208ENST00000546534 CALCRP30988 508 aa11.04□□□□□ -0.64
SCAF11-208ENST00000546534 SLC1A3P43003 542 aa11.04□□□□□ -0.64
SCAF11-208ENST00000546534 HILS1P60008 231 aa11.04□□□□□ -0.64
SCAF11-208ENST00000546534 RPL38P63173 70 aaKnown RBP11.04□□□□□ -0.64
SCAF11-208ENST00000546534 NAAAQ02083 359 aa11.04□□□□□ -0.64
SCAF11-208ENST00000546534 SLC17A1Q14916 467 aa11.04□□□□□ -0.64
SCAF11-208ENST00000546534 SPDYE7PQ495Y7 208 aa11.04□□□□□ -0.64
SCAF11-208ENST00000546534 ANKRD16Q6P6B7 361 aa11.04□□□□□ -0.64
SCAF11-208ENST00000546534 R3HCC1LQ7Z5L2 792 aaKnown RBP11.04□□□□□ -0.64
SCAF11-208ENST00000546534 ADGRG3Q86Y34 549 aa11.04□□□□□ -0.64
SCAF11-208ENST00000546534 SVOPLQ8N434 492 aa11.04□□□□□ -0.64
SCAF11-208ENST00000546534 OR7A2PQ8NGA2 310 aa11.04□□□□□ -0.64
SCAF11-208ENST00000546534 PSMA8Q8TAA3 256 aa11.04□□□□□ -0.64
SCAF11-208ENST00000546534 UBASH3BQ8TF42 649 aa11.04□□□□□ -0.64
SCAF11-208ENST00000546534 DOK1Q99704 481 aa11.04□□□□□ -0.64
SCAF11-208ENST00000546534 RBM4Q9BWF3 364 aaKnown RBP11.04□□□□□ -0.64
SCAF11-208ENST00000546534 OBP2BQ9NPH6 170 aa11.04□□□□□ -0.64
SCAF11-208ENST00000546534 HIF1ANQ9NWT6 349 aa11.04□□□□□ -0.64
SCAF11-208ENST00000546534 TMEM181Q9P2C4 612 aa11.04□□□□□ -0.64
SCAF11-208ENST00000546534 ATP6V1HQ9UI12 483 aa11.04□□□□□ -0.64
SCAF11-208ENST00000546534 EMCNQ9ULC0 261 aa11.04□□□□□ -0.64
SCAF11-208ENST00000546534 PCDHB10Q9UN67 800 aa11.04□□□□□ -0.64
SCAF11-208ENST00000546534 TRAPPC4Q9Y296 219 aa11.04□□□□□ -0.64
SCAF11-208ENST00000546534 SPEF1Q9Y4P9 236 aa11.04□□□□□ -0.64
SCAF11-208ENST00000546534 TMEM129A0AVI4 362 aa11.03□□□□□ -0.64
SCAF11-208ENST00000546534 SH3PXD2BA1X283 911 aa11.03□□□□□ -0.64
SCAF11-208ENST00000546534 ANKRD28O15084 1053 aa11.03□□□□□ -0.64
SCAF11-208ENST00000546534 TMPRSS2O15393 492 aa11.03□□□□□ -0.64
SCAF11-208ENST00000546534 BCAS1O75363 584 aaPredicted RBP11.03□□□□□ -0.64
SCAF11-208ENST00000546534 SKAP2O75563 359 aaPredicted RBP11.03□□□□□ -0.64
SCAF11-208ENST00000546534 UGT2B17O75795 530 aa11.03□□□□□ -0.64
SCAF11-208ENST00000546534 URI1O94763 535 aaPredicted RBP11.03□□□□□ -0.64
SCAF11-208ENST00000546534 C6orf47O95873 294 aa11.03□□□□□ -0.64
SCAF11-208ENST00000546534 CECR9P0C854 216 aa11.03□□□□□ -0.64
SCAF11-208ENST00000546534 LAMP1P11279 417 aa11.03□□□□□ -0.64
SCAF11-208ENST00000546534 BCKDHAP12694 445 aa11.03□□□□□ -0.64
SCAF11-208ENST00000546534 DDX5P17844 614 aaKnown RBP11.03□□□□□ -0.64
SCAF11-208ENST00000546534 RYKP34925 604 aa11.03□□□□□ -0.64
SCAF11-208ENST00000546534 ASMTP46597 345 aa11.03□□□□□ -0.64
SCAF11-208ENST00000546534 CLK1P49759 484 aaKnown RBP11.03□□□□□ -0.64
SCAF11-208ENST00000546534 KHKP50053 298 aa11.03□□□□□ -0.64
SCAF11-208ENST00000546534 ARFIP2P53365 341 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms