RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 TAS2R8Q9NYW2 309 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 SHPKQ9UHJ6 478 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 WNT1P04628 370 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 CLDN2P57739 230 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 NKAPLQ5M9Q1 402 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 ZNF776Q68DI1 518 aaPredicted RBP13.25□□□□□ -0.29
LIMS1-215ENST00000544547 OR5M1Q8NGP8 315 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 OR10Z1Q8NGY1 313 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 ARL5BQ96KC2 179 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 USB1Q9BQ65 265 aaKnown RBP13.25□□□□□ -0.29
LIMS1-215ENST00000544547 NOX4Q9NPH5 578 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 CYSLTR2Q9NS75 346 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 CPED1A4D0V7 1026 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 ANTXRLA6NF34 631 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 EMC8O43402 210 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 FBXO24O75426 580 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 HPXP02790 462 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 ACTA2P62736 377 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 ACTG2P63267 376 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 DSC1Q08554 894 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 RBMS2Q15434 407 aaKnown RBP13.25□□□□□ -0.29
LIMS1-215ENST00000544547 NNATQ16517 81 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 MAPK14Q16539 360 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 SLC16A13Q7RTY0 426 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 LNX2Q8N448 690 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 DNAAF1Q8NEP3 725 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 OR2L5Q8NG80 312 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 CHTF18Q8WVB6 975 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 IRF7Q92985 503 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 TMEM202A6NGA9 273 aa13.24□□□□□ -0.29
LIMS1-215ENST00000544547 YY2O15391 372 aa13.24□□□□□ -0.29
LIMS1-215ENST00000544547 HLA-AP01891 365 aaKnown RBP13.24□□□□□ -0.29
LIMS1-215ENST00000544547 GIPP09681 153 aaPredicted RBP13.24□□□□□ -0.29
LIMS1-215ENST00000544547 RAB6AP20340 208 aa13.24□□□□□ -0.29
LIMS1-215ENST00000544547 C6orf132Q5T0Z8 1188 aa13.24□□□□□ -0.29
LIMS1-215ENST00000544547 DCUN1D3Q8IWE4 304 aa13.24□□□□□ -0.29
LIMS1-215ENST00000544547 OR7G2Q8NG99 324 aa13.24□□□□□ -0.29
LIMS1-215ENST00000544547 OR11H4Q8NGC9 324 aa13.24□□□□□ -0.29
LIMS1-215ENST00000544547 OR2T4Q8NH00 348 aa13.24□□□□□ -0.29
LIMS1-215ENST00000544547 OR52N1Q8NH53 320 aa13.24□□□□□ -0.29
LIMS1-215ENST00000544547 TMEM255BQ8WV15 326 aa13.24□□□□□ -0.29
LIMS1-215ENST00000544547 SGIP1Q9BQI5 828 aa13.24□□□□□ -0.29
LIMS1-215ENST00000544547 CHST8Q9H2A9 424 aa13.24□□□□□ -0.29
LIMS1-215ENST00000544547 ZMAT3Q9HA38 289 aaKnown RBP13.24□□□□□ -0.29
LIMS1-215ENST00000544547 HRASLSQ9HDD0 168 aa13.24□□□□□ -0.29
LIMS1-215ENST00000544547 PNO1Q9NRX1 252 aaKnown RBP13.24□□□□□ -0.29
LIMS1-215ENST00000544547 PCDHGA9Q9Y5G4 932 aaKnown RBP13.24□□□□□ -0.29
LIMS1-215ENST00000544547 APC2O95996 2303 aa13.24□□□□□ -0.29
LIMS1-215ENST00000544547 MEIKINA0A087WXM9 373 aa13.24□□□□□ -0.29
LIMS1-215ENST00000544547 GXYLT2A0PJZ3 443 aa13.24□□□□□ -0.29
LIMS1-215ENST00000544547 WRBO00258 174 aa13.24□□□□□ -0.29
LIMS1-215ENST00000544547 B4GALT2O60909 372 aa13.24□□□□□ -0.29
LIMS1-215ENST00000544547 SCGNO76038 276 aa13.24□□□□□ -0.29
LIMS1-215ENST00000544547 HTR1FP30939 366 aa13.24□□□□□ -0.29
LIMS1-215ENST00000544547 PPT1P50897 306 aa13.24□□□□□ -0.29
LIMS1-215ENST00000544547 ADAM5Q6NVV9 412 aa13.24□□□□□ -0.29
LIMS1-215ENST00000544547 NHLRC1Q6VVB1 395 aa13.24□□□□□ -0.29
LIMS1-215ENST00000544547 KIAA0907Q7Z7F0 614 aaPredicted RBP13.24□□□□□ -0.29
LIMS1-215ENST00000544547 OR5AR1Q8NGP9 310 aa13.24□□□□□ -0.29
LIMS1-215ENST00000544547 OR13C2Q8NGS9 318 aa13.24□□□□□ -0.29
LIMS1-215ENST00000544547 ZNF649Q9BS31 505 aa13.24□□□□□ -0.29
LIMS1-215ENST00000544547 PDFQ9HBH1 243 aa13.24□□□□□ -0.29
LIMS1-215ENST00000544547 LIMS3P0CW19 117 aa13.24□□□□□ -0.29
LIMS1-215ENST00000544547 LIMS4P0CW20 117 aa13.24□□□□□ -0.29
LIMS1-215ENST00000544547 DCTDP32321 178 aa13.24□□□□□ -0.29
LIMS1-215ENST00000544547 SQSTM1Q13501 440 aa13.24□□□□□ -0.29
LIMS1-215ENST00000544547 CRMP1Q14194 572 aa13.24□□□□□ -0.29
LIMS1-215ENST00000544547 TMEM25Q86YD3 366 aa13.24□□□□□ -0.29
LIMS1-215ENST00000544547 FBLIM1Q8WUP2 373 aa13.24□□□□□ -0.29
LIMS1-215ENST00000544547 SAMD11Q96NU1 681 aa13.24□□□□□ -0.29
LIMS1-215ENST00000544547 LIPT1Q9Y234 373 aa13.24□□□□□ -0.29
LIMS1-215ENST00000544547 A0A0B4J293 547 aa13.23□□□□□ -0.29
LIMS1-215ENST00000544547 DCDC2BA2VCK2 349 aa13.23□□□□□ -0.29
LIMS1-215ENST00000544547 CFIP05156 583 aa13.23□□□□□ -0.29
LIMS1-215ENST00000544547 AKAIN1P0CW23 69 aa13.23□□□□□ -0.29
LIMS1-215ENST00000544547 FOSL1P15407 271 aa13.23□□□□□ -0.29
LIMS1-215ENST00000544547 ITGB7P26010 798 aa13.23□□□□□ -0.29
LIMS1-215ENST00000544547 CSRP3P50461 194 aa13.23□□□□□ -0.29
LIMS1-215ENST00000544547 SLCO4C1Q6ZQN7 724 aa13.23□□□□□ -0.29
LIMS1-215ENST00000544547 HSD11B1LQ7Z5J1 315 aa13.23□□□□□ -0.29
LIMS1-215ENST00000544547 OR9A2Q8NGT5 310 aa13.23□□□□□ -0.29
LIMS1-215ENST00000544547 BCL7CQ8WUZ0 217 aaPredicted RBP13.23□□□□□ -0.29
LIMS1-215ENST00000544547 TMEM239Q8WW34 195 aa13.23□□□□□ -0.29
LIMS1-215ENST00000544547 PMM1Q92871 262 aa13.23□□□□□ -0.29
LIMS1-215ENST00000544547 ZBTB8AQ96BR9 441 aa13.23□□□□□ -0.29
LIMS1-215ENST00000544547 C14orf79Q96F83 325 aa13.23□□□□□ -0.29
LIMS1-215ENST00000544547 C1QTNF2Q9BXJ5 285 aa13.23□□□□□ -0.29
LIMS1-215ENST00000544547 UBQLN3Q9H347 655 aa13.23□□□□□ -0.29
LIMS1-215ENST00000544547 CCL27Q9Y4X3 112 aa13.23□□□□□ -0.29
LIMS1-215ENST00000544547 IER3IP1Q9Y5U9 82 aa13.23□□□□□ -0.29
LIMS1-215ENST00000544547 POLR2AP24928 1970 aaKnown RBP13.23□□□□□ -0.29
LIMS1-215ENST00000544547 COL11A1P12107 1806 aaPredicted RBP13.23□□□□□ -0.29
LIMS1-215ENST00000544547 NPC1O15118 1278 aa13.23□□□□□ -0.29
LIMS1-215ENST00000544547 SPARCP09486 303 aa13.23□□□□□ -0.29
LIMS1-215ENST00000544547 C6P13671 934 aa13.23□□□□□ -0.29
LIMS1-215ENST00000544547 TYRP1P17643 537 aa13.23□□□□□ -0.29
LIMS1-215ENST00000544547 ENPP2Q13822 863 aa13.23□□□□□ -0.29
LIMS1-215ENST00000544547 ARHGAP40Q5TG30 622 aa13.23□□□□□ -0.29
LIMS1-215ENST00000544547 GLB1L2Q8IW92 636 aa13.23□□□□□ -0.29
LIMS1-215ENST00000544547 CBARPQ8N350 705 aaPredicted RBP13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms