RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 MYEF2Q9P2K5 600 aaKnown RBP7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 PLEKHB1Q9UF11 243 aaPredicted RBP7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 YARS2Q9Y2Z4 477 aaKnown RBP7.41□□□□□ -1.22
PDLIM5-221ENST00000542407 hCG_1807616A0A1W2PRN6 198 aa7.4□□□□□ -1.22
PDLIM5-221ENST00000542407 HRO43593 1189 aa7.4□□□□□ -1.22
PDLIM5-221ENST00000542407 NARSO43776 548 aaKnown RBP7.4□□□□□ -1.22
PDLIM5-221ENST00000542407 SH3BGRLO75368 114 aa7.4□□□□□ -1.22
PDLIM5-221ENST00000542407 CPSF4O95639 269 aaKnown RBP7.4□□□□□ -1.22
PDLIM5-221ENST00000542407 OPN1SWP03999 348 aa7.4□□□□□ -1.22
PDLIM5-221ENST00000542407 SLC35G4P0C7Q5 338 aa7.4□□□□□ -1.22
PDLIM5-221ENST00000542407 OR8G3PP0DMU2 310 aa7.4□□□□□ -1.22
PDLIM5-221ENST00000542407 ANXA3P12429 323 aa7.4□□□□□ -1.22
PDLIM5-221ENST00000542407 CXCL3P19876 107 aa7.4□□□□□ -1.22
PDLIM5-221ENST00000542407 STOMP27105 288 aa7.4□□□□□ -1.22
PDLIM5-221ENST00000542407 KIR3DL1P43629 444 aa7.4□□□□□ -1.22
PDLIM5-221ENST00000542407 OR1E2P47887 323 aa7.4□□□□□ -1.22
PDLIM5-221ENST00000542407 AVPR1BP47901 424 aa7.4□□□□□ -1.22
PDLIM5-221ENST00000542407 AGFG1P52594 562 aaKnown RBP7.4□□□□□ -1.22
PDLIM5-221ENST00000542407 CTBP2P56545 445 aa7.4□□□□□ -1.22
PDLIM5-221ENST00000542407 KIAA1024LP59773 190 aa7.4□□□□□ -1.22
PDLIM5-221ENST00000542407 SPIBQ01892 262 aa7.4□□□□□ -1.22
PDLIM5-221ENST00000542407 TFF2Q03403 129 aa7.4□□□□□ -1.22
PDLIM5-221ENST00000542407 LGALSLQ3ZCW2 172 aaPredicted RBP7.4□□□□□ -1.22
PDLIM5-221ENST00000542407 COMMD6Q7Z4G1 85 aa7.4□□□□□ -1.22
PDLIM5-221ENST00000542407 AGBL5Q8NDL9 886 aa7.4□□□□□ -1.22
PDLIM5-221ENST00000542407 DUSP18Q8NEJ0 188 aa7.4□□□□□ -1.22
PDLIM5-221ENST00000542407 OR11H7Q8NGC8 314 aa7.4□□□□□ -1.22
PDLIM5-221ENST00000542407 OR4K1Q8NGD4 311 aa7.4□□□□□ -1.22
PDLIM5-221ENST00000542407 MISP3Q96FF7 219 aa7.4□□□□□ -1.22
PDLIM5-221ENST00000542407 KCNK17Q96T54 332 aa7.4□□□□□ -1.22
PDLIM5-221ENST00000542407 GABARAPL3Q9BY60 117 aa7.4□□□□□ -1.22
PDLIM5-221ENST00000542407 KLHL31Q9H511 634 aa7.4□□□□□ -1.22
PDLIM5-221ENST00000542407 OPA3Q9H6K4 179 aa7.4□□□□□ -1.22
PDLIM5-221ENST00000542407 GAREM1Q9H706 876 aa7.4□□□□□ -1.22
PDLIM5-221ENST00000542407 PELI2Q9HAT8 420 aa7.4□□□□□ -1.22
PDLIM5-221ENST00000542407 BEX1Q9HBH7 125 aa7.4□□□□□ -1.22
PDLIM5-221ENST00000542407 C11orf16Q9NQ32 467 aa7.4□□□□□ -1.22
PDLIM5-221ENST00000542407 TEX10Q9NXF1 929 aaPredicted RBP7.4□□□□□ -1.22
PDLIM5-221ENST00000542407 DNAJC27Q9NZQ0 273 aa7.4□□□□□ -1.22
PDLIM5-221ENST00000542407 KCNK6Q9Y257 313 aa7.4□□□□□ -1.22
PDLIM5-221ENST00000542407 GOLT1BQ9Y3E0 138 aa7.4□□□□□ -1.22
PDLIM5-221ENST00000542407 LRP4O75096 1905 aa7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 TBC1D3DA0A087WVF3 549 aa7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 TBC1D3IA0A087WXS9 549 aa7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 TBC1D3EA0A087X179 549 aa7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 TBC1D3KA0A087X1G2 549 aa7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 IGKV1-8A0A0C4DH67 115 aa7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 TBC1D3FA6NER0 549 aaPredicted RBP7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 GABRR3A8MPY1 467 aa7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 TBC1D3LB9A6J9 549 aa7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 TMEM238C9JI98 176 aa7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 M0R233 179 aa7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 DOK2O60496 412 aa7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 HCN1O60741 890 aa7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 CSO75390 466 aaKnown RBP7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 APOC3P02656 99 aa7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 RPN2P04844 631 aa7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 GUSBP08236 651 aa7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 ANXA4P09525 319 aaPredicted RBP7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 TBC1D3HP0C7X1 549 aa7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 LAMP1P11279 417 aa7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 IDSP22304 550 aa7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 DNASE1P24855 282 aa7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 ATP5A1P25705 553 aaKnown RBP7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 FEN1P39748 380 aaKnown RBP7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 RBP2P50120 134 aa7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 ITGA1P56199 1179 aa7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 CDC42P60953 191 aa7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 RBX1P62877 108 aa7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 REEP5Q00765 189 aa7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 SRSF11Q05519 484 aaKnown RBP7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 TSTA3Q13630 321 aaPredicted RBP7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 PDE7AQ13946 482 aa7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 DUOXA1Q1HG43 343 aa7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 BICRALQ6AI39 1079 aa7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 TBC1D3GQ6DHY5 549 aa7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 TBC1D3CQ6IPX1 549 aa7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 TBC1D3Q8IZP1 549 aaPredicted RBP7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 GHDCQ8N2G8 530 aa7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 C12orf45Q8N5I9 185 aaPredicted RBP7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 BEST4Q8NFU0 473 aa7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 OR2L3Q8NG85 312 aa7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 SPSB2Q99619 263 aa7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 TAPBPLQ9BX59 468 aa7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 CDCA4Q9BXL8 241 aa7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 POLDIP3Q9BY77 421 aaKnown RBP7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 DUSP15Q9H1R2 295 aaPredicted RBP7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 TXNL4BQ9NX01 149 aaKnown RBP7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 FAM120CQ9NX05 1096 aaKnown RBP7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 TAC3Q9UHF0 121 aa7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 FOXD3Q9UJU5 478 aaPredicted RBP7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 PURGQ9UJV8 347 aaKnown RBP7.4□□□□□ -1.23
PDLIM5-221ENST00000542407 TCRBV16S1A1N1A0A5B0 115 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 SLC22A23A1A5C7 686 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 PRSS38A1L453 326 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 A6NIN4 97 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 H0Y8X5 98 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 SIGLEC5O15389 551 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 SLC31A1O15431 190 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 PRICKLE3O43900 615 aaPredicted RBP7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms