RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 AAGABQ6PD74 315 aa7.8□□□□□ -1.16
CLSTN3-212ENST00000541770 PODNL1Q6PEZ8 512 aa7.8□□□□□ -1.16
CLSTN3-212ENST00000541770 C16orf89Q6UX73 402 aa7.8□□□□□ -1.16
CLSTN3-212ENST00000541770 C20orf204Q6ZNR8 217 aa7.8□□□□□ -1.16
CLSTN3-212ENST00000541770 ZNF550Q7Z398 422 aa7.8□□□□□ -1.16
CLSTN3-212ENST00000541770 P4HA3Q7Z4N8 544 aa7.8□□□□□ -1.16
CLSTN3-212ENST00000541770 IFNEQ86WN2 208 aa7.8□□□□□ -1.16
CLSTN3-212ENST00000541770 VRK2Q86Y07 508 aa7.8□□□□□ -1.16
CLSTN3-212ENST00000541770 ZNF440Q8IYI8 595 aa7.8□□□□□ -1.16
CLSTN3-212ENST00000541770 MICU2Q8IYU8 434 aa7.8□□□□□ -1.16
CLSTN3-212ENST00000541770 GTPBP8Q8N3Z3 284 aaPredicted RBP7.8□□□□□ -1.16
CLSTN3-212ENST00000541770 CNEP1R1Q8N9A8 125 aa7.8□□□□□ -1.16
CLSTN3-212ENST00000541770 OR14L1PQ8NHC6 308 aa7.8□□□□□ -1.16
CLSTN3-212ENST00000541770 ZPLD1Q8TCW7 415 aa7.8□□□□□ -1.16
CLSTN3-212ENST00000541770 TMEM171Q8WVE6 324 aa7.8□□□□□ -1.16
CLSTN3-212ENST00000541770 ZBTB8AQ96BR9 441 aa7.8□□□□□ -1.16
CLSTN3-212ENST00000541770 SH3YL1Q96HL8 342 aaPredicted RBP7.8□□□□□ -1.16
CLSTN3-212ENST00000541770 PIGQQ9BRB3 760 aa7.8□□□□□ -1.16
CLSTN3-212ENST00000541770 PINK1Q9BXM7 581 aa7.8□□□□□ -1.16
CLSTN3-212ENST00000541770 C1orf21Q9H246 121 aa7.8□□□□□ -1.16
CLSTN3-212ENST00000541770 PIGMQ9H3S5 423 aa7.8□□□□□ -1.16
CLSTN3-212ENST00000541770 ALG2Q9H553 416 aa7.8□□□□□ -1.16
CLSTN3-212ENST00000541770 PIF1Q9H611 641 aa7.8□□□□□ -1.16
CLSTN3-212ENST00000541770 EVA1AQ9H8M9 152 aa7.8□□□□□ -1.16
CLSTN3-212ENST00000541770 MED17Q9NVC6 651 aa7.8□□□□□ -1.16
CLSTN3-212ENST00000541770 PACSIN3Q9UKS6 424 aa7.8□□□□□ -1.16
CLSTN3-212ENST00000541770 CHST2Q9Y4C5 530 aa7.8□□□□□ -1.16
CLSTN3-212ENST00000541770 CSPG4Q6UVK1 2322 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 ARID1AO14497 2285 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 TNFSF12-TNFSF13A0A0A6YY99 330 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 DEFB108AA8MXU0 73 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 B2RBV5 119 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 M0QX08 132 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 BCAS1O75363 584 aaPredicted RBP7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 UBOX5O94941 541 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 NUDT14O95848 222 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 IFNA14P01570 189 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 TP53P04637 393 aaPredicted RBP7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 HSD17B1P14061 328 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 HK1P19367 917 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 TCEA1P23193 301 aaKnown RBP7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 AQP1P29972 269 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 EIF1P41567 113 aaKnown RBP7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 STARP49675 285 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 GSK3BP49841 420 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 B3GALT5-AS1P59052 145 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 MXRA7P84157 204 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 SLC25A3Q00325 362 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 TNK1Q13470 666 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 BCL2A1Q16548 175 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 NDUFAF6Q330K2 333 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 SAMD4BQ5PRF9 694 aaKnown RBP7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 ENPP6Q6UWR7 440 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 C6orf89Q6UWU4 347 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 ZNF836Q6ZNA1 936 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 PLEKHM3Q6ZWE6 761 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 HMGN2P46Q86SG4 172 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 ARMC8Q8IUR7 673 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 DEFB107AQ8IZN7 70 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 ARHGAP24Q8N264 748 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 CLIP4Q8N3C7 705 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 TMCO5AQ8N6Q1 288 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 RBM15BQ8NDT2 890 aaKnown RBP7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 FBXO27Q8NI29 283 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 RASSF5Q8WWW0 418 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 TMEM234Q8WY98 164 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 TMEM158Q8WZ71 300 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 ST8SIA1Q92185 356 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 CNOT9Q92600 299 aaKnown RBP7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 MRGPRX4Q96LA9 322 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 ZFP3Q96NJ6 502 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 HS3ST6Q96QI5 342 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 KLHDC3Q9BQ90 382 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 RSPO3Q9BXY4 272 aaPredicted RBP7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 GSX2Q9BZM3 304 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 CD300AQ9UGN4 299 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 VDAC3Q9Y277 283 aa7.79□□□□□ -1.16
CLSTN3-212ENST00000541770 OR2M5A3KFT3 312 aa7.78□□□□□ -1.16
CLSTN3-212ENST00000541770 CFAP73A6NFT4 308 aa7.78□□□□□ -1.16
CLSTN3-212ENST00000541770 RNF223E7ERA6 249 aa7.78□□□□□ -1.16
CLSTN3-212ENST00000541770 HAX1O00165 279 aa7.78□□□□□ -1.16
CLSTN3-212ENST00000541770 GMFGO60234 142 aa7.78□□□□□ -1.16
CLSTN3-212ENST00000541770 ADAM11O75078 769 aa7.78□□□□□ -1.16
CLSTN3-212ENST00000541770 CYP7B1O75881 506 aa7.78□□□□□ -1.16
CLSTN3-212ENST00000541770 NTN1O95631 604 aa7.78□□□□□ -1.16
CLSTN3-212ENST00000541770 LGI1O95970 557 aa7.78□□□□□ -1.16
CLSTN3-212ENST00000541770 POU2F1P14859 743 aa7.78□□□□□ -1.16
CLSTN3-212ENST00000541770 CPN1P15169 458 aa7.78□□□□□ -1.16
CLSTN3-212ENST00000541770 PRKCAP17252 672 aa7.78□□□□□ -1.16
CLSTN3-212ENST00000541770 CRYGSP22914 178 aa7.78□□□□□ -1.16
CLSTN3-212ENST00000541770 PSMA4P25789 261 aaKnown RBP7.78□□□□□ -1.16
CLSTN3-212ENST00000541770 ELK4P28324 431 aa7.78□□□□□ -1.16
CLSTN3-212ENST00000541770 KDELR2P33947 212 aa7.78□□□□□ -1.16
CLSTN3-212ENST00000541770 CD79BP40259 229 aa7.78□□□□□ -1.16
CLSTN3-212ENST00000541770 ACAA2P42765 397 aaKnown RBP7.78□□□□□ -1.16
CLSTN3-212ENST00000541770 LHX2P50458 406 aa7.78□□□□□ -1.16
CLSTN3-212ENST00000541770 RNF144AP50876 292 aaPredicted RBP7.78□□□□□ -1.16
CLSTN3-212ENST00000541770 CCR4P51679 360 aa7.78□□□□□ -1.16
CLSTN3-212ENST00000541770 CRYBA2P53672 197 aa7.78□□□□□ -1.16
CLSTN3-212ENST00000541770 ATP5J2P56134 94 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms