RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 OSTM1Q86WC4 334 aa8.21□□□□□ -1.1
YBX3-208ENST00000540447 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.21□□□□□ -1.1
YBX3-208ENST00000540447 OR2T4Q8NH00 348 aa8.21□□□□□ -1.1
YBX3-208ENST00000540447 OR14L1PQ8NHC6 308 aa8.21□□□□□ -1.1
YBX3-208ENST00000540447 DAZAP1Q96EP5 407 aaKnown RBP8.21□□□□□ -1.1
YBX3-208ENST00000540447 OR2A14Q96R47 310 aa8.21□□□□□ -1.1
YBX3-208ENST00000540447 SNX11Q9Y5W9 270 aa8.21□□□□□ -1.1
YBX3-208ENST00000540447 BACE2Q9Y5Z0 518 aa8.21□□□□□ -1.1
YBX3-208ENST00000540447 ZNF727A8MUV8 499 aa8.21□□□□□ -1.1
YBX3-208ENST00000540447 UPK3BL1B0FP48 263 aa8.21□□□□□ -1.1
YBX3-208ENST00000540447 UPK3BL2E5RIL1 263 aa8.21□□□□□ -1.1
YBX3-208ENST00000540447 GPX5O75715 221 aa8.21□□□□□ -1.1
YBX3-208ENST00000540447 NSA2O95478 260 aaKnown RBP8.21□□□□□ -1.1
YBX3-208ENST00000540447 TAS2R60P59551 318 aa8.21□□□□□ -1.1
YBX3-208ENST00000540447 SMAD3P84022 425 aaKnown RBP8.21□□□□□ -1.1
YBX3-208ENST00000540447 ILKQ13418 452 aa8.21□□□□□ -1.1
YBX3-208ENST00000540447 PIN1Q13526 163 aaPredicted RBP8.21□□□□□ -1.1
YBX3-208ENST00000540447 ENDOGQ14249 297 aaKnown RBP8.21□□□□□ -1.1
YBX3-208ENST00000540447 HLXQ14774 488 aaPredicted RBP8.21□□□□□ -1.1
YBX3-208ENST00000540447 DHCR24Q15392 516 aa8.21□□□□□ -1.1
YBX3-208ENST00000540447 RTP2Q5QGT7 225 aa8.21□□□□□ -1.1
YBX3-208ENST00000540447 LEMD1Q68G75 181 aa8.21□□□□□ -1.1
YBX3-208ENST00000540447 FAM109BQ6ICB4 259 aaPredicted RBP8.21□□□□□ -1.1
YBX3-208ENST00000540447 CCDC190Q86UF4 302 aa8.21□□□□□ -1.1
YBX3-208ENST00000540447 STPG2Q8N412 459 aa8.21□□□□□ -1.1
YBX3-208ENST00000540447 NXF2Q9GZY0 626 aaKnown RBP8.21□□□□□ -1.1
YBX3-208ENST00000540447 USP22Q9UPT9 525 aa8.21□□□□□ -1.1
YBX3-208ENST00000540447 USP31Q70CQ4 1352 aa8.21□□□□□ -1.1
YBX3-208ENST00000540447 A0A1B0GV72 72 aa8.21□□□□□ -1.1
YBX3-208ENST00000540447 A0A1W2PPH5 198 aa8.21□□□□□ -1.1
YBX3-208ENST00000540447 TCRBV16S1A1N1A0A5B0 115 aa8.21□□□□□ -1.1
YBX3-208ENST00000540447 PPP1R3DO95685 299 aa8.21□□□□□ -1.1
YBX3-208ENST00000540447 SERPINE2P07093 398 aa8.21□□□□□ -1.1
YBX3-208ENST00000540447 TACR3P29371 465 aa8.21□□□□□ -1.1
YBX3-208ENST00000540447 RPL13AP40429 203 aaKnown RBP8.21□□□□□ -1.1
YBX3-208ENST00000540447 SULT1A2P50226 295 aa8.21□□□□□ -1.1
YBX3-208ENST00000540447 RNF144AP50876 292 aaPredicted RBP8.21□□□□□ -1.1
YBX3-208ENST00000540447 CLDN12P56749 244 aa8.21□□□□□ -1.1
YBX3-208ENST00000540447 ZXDBP98169 803 aa8.21□□□□□ -1.1
YBX3-208ENST00000540447 HOXC5Q00444 222 aa8.21□□□□□ -1.1
YBX3-208ENST00000540447 SLC18B1Q6NT16 456 aa8.21□□□□□ -1.1
YBX3-208ENST00000540447 EXD3Q8N9H8 876 aa8.21□□□□□ -1.1
YBX3-208ENST00000540447 OR51Q1Q8NH59 317 aa8.21□□□□□ -1.1
YBX3-208ENST00000540447 ZNF516Q92618 1163 aa8.21□□□□□ -1.1
YBX3-208ENST00000540447 DVL3Q92997 716 aaPredicted RBP8.21□□□□□ -1.1
YBX3-208ENST00000540447 LMLNQ96KR4 655 aa8.21□□□□□ -1.1
YBX3-208ENST00000540447 ATF6BQ99941 703 aa8.21□□□□□ -1.1
YBX3-208ENST00000540447 PARD6GQ9BYG4 376 aaPredicted RBP8.21□□□□□ -1.1
YBX3-208ENST00000540447 H7BY64 318 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 ERI3O43414 337 aaKnown RBP8.2□□□□□ -1.1
YBX3-208ENST00000540447 HPNP05981 417 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 CASP7P55210 303 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 OR10A3P58181 314 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 MPPED2Q15777 294 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 AFMIDQ63HM1 303 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 FCRLBQ6BAA4 426 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 SMYD5Q6GMV2 418 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 MFSD4AQ8N468 514 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 TP53I13Q8NBR0 393 aaPredicted RBP8.2□□□□□ -1.1
YBX3-208ENST00000540447 OR5L2Q8NGL0 311 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 C1orf198Q9H425 327 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 EHFQ9NZC4 300 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 OARD1Q9Y530 152 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 RNF17Q9BXT8 1623 aaKnown RBP8.2□□□□□ -1.1
YBX3-208ENST00000540447 A0A1W2PPQ1 181 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 AQP7P3A6NL99 342 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 GRIN3BO60391 1043 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 SCGB2A1O75556 95 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 TRAPPC6AO75865 159 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 FAM163BP0C2L3 166 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 RNF224P0DH78 156 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 HOXD10P28358 340 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 FOXA1P55317 472 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 GALNT2Q10471 571 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 IAH1Q2TAA2 248 aaPredicted RBP8.2□□□□□ -1.1
YBX3-208ENST00000540447 ACOT6Q3I5F7 207 aaPredicted RBP8.2□□□□□ -1.1
YBX3-208ENST00000540447 LIPNQ5VXI9 398 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 LEG1Q6P5S2 330 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 BRICD5Q6PL45 260 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 LCTLQ6UWM7 567 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 MEPCEQ7L2J0 689 aaKnown RBP8.2□□□□□ -1.1
YBX3-208ENST00000540447 OR51S1Q8NGJ8 323 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 OR6K3Q8NGY3 331 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 OR4K15Q8NH41 348 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 RXFP4Q8TDU9 374 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 SLC39A7Q92504 469 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 THOC3Q96J01 351 aaKnown RBP8.2□□□□□ -1.1
YBX3-208ENST00000540447 KIRREL1Q96J84 757 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 NRIP3Q9NQ35 241 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 ST6GALNAC1Q9NSC7 600 aaPredicted RBP8.2□□□□□ -1.1
YBX3-208ENST00000540447 AK3Q9UIJ7 227 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 FLVCR2Q9UPI3 526 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 RHBDD3Q9Y3P4 386 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 hCG_1809904A0A1W2PP81 198 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 A0A1W2PR64 198 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 A0A1W2PRV1 198 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 DDTLA6NHG4 134 aaPredicted RBP8.2□□□□□ -1.1
YBX3-208ENST00000540447 PTP4A3O75365 173 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 MMP11P24347 488 aa8.2□□□□□ -1.1
YBX3-208ENST00000540447 HTR6P50406 440 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms