RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 TP53I3Q53FA7 332 aa12.1□□□□□ -0.47
LDLR-203ENST00000535915 MCATQ8IVS2 390 aaKnown RBP12.1□□□□□ -0.47
LDLR-203ENST00000535915 RCBTB1Q8NDN9 531 aa12.1□□□□□ -0.47
LDLR-203ENST00000535915 OR13C5Q8NGS8 318 aa12.1□□□□□ -0.47
LDLR-203ENST00000535915 ZDHHC1Q8WTX9 485 aa12.1□□□□□ -0.47
LDLR-203ENST00000535915 PLSCR3Q9NRY6 295 aa12.1□□□□□ -0.47
LDLR-203ENST00000535915 PRUNE2Q8WUY3 3088 aa12.1□□□□□ -0.47
LDLR-203ENST00000535915 OR2W5A6NFC9 320 aa12.09□□□□□ -0.47
LDLR-203ENST00000535915 OR6C70A6NIJ9 312 aa12.09□□□□□ -0.47
LDLR-203ENST00000535915 SLC9B1P1A6NJY1 282 aa12.09□□□□□ -0.47
LDLR-203ENST00000535915 MAGEB4O15481 346 aaPredicted RBP12.09□□□□□ -0.47
LDLR-203ENST00000535915 NDUFB2O95178 105 aa12.09□□□□□ -0.47
LDLR-203ENST00000535915 PAHP00439 452 aa12.09□□□□□ -0.47
LDLR-203ENST00000535915 NRG3P56975 720 aa12.09□□□□□ -0.47
LDLR-203ENST00000535915 MAT1AQ00266 395 aaKnown RBP12.09□□□□□ -0.47
LDLR-203ENST00000535915 DMKNQ6E0U4 476 aaPredicted RBP12.09□□□□□ -0.47
LDLR-203ENST00000535915 NPSR1Q6W5P4 371 aa12.09□□□□□ -0.47
LDLR-203ENST00000535915 ASB18Q6ZVZ8 466 aa12.09□□□□□ -0.47
LDLR-203ENST00000535915 SDR16C5Q8N3Y7 309 aa12.09□□□□□ -0.47
LDLR-203ENST00000535915 LRRC17Q8N6Y2 441 aa12.09□□□□□ -0.47
LDLR-203ENST00000535915 TRMT10AQ8TBZ6 339 aaKnown RBP12.09□□□□□ -0.47
LDLR-203ENST00000535915 RNF170Q96K19 258 aa12.09□□□□□ -0.47
LDLR-203ENST00000535915 GFM1Q96RP9 751 aaKnown RBP12.09□□□□□ -0.47
LDLR-203ENST00000535915 THAP7Q9BT49 309 aaPredicted RBP12.09□□□□□ -0.47
LDLR-203ENST00000535915 Q9N2J8 555 aa12.09□□□□□ -0.47
LDLR-203ENST00000535915 MKKSQ9NPJ1 570 aaPredicted RBP12.09□□□□□ -0.47
LDLR-203ENST00000535915 CHRNA9Q9UGM1 479 aa12.09□□□□□ -0.47
LDLR-203ENST00000535915 MMP17Q9ULZ9 603 aa12.09□□□□□ -0.47
LDLR-203ENST00000535915 CYP8B1Q9UNU6 501 aa12.09□□□□□ -0.47
LDLR-203ENST00000535915 MRPS33Q9Y291 106 aaKnown RBP12.09□□□□□ -0.47
LDLR-203ENST00000535915 IER3IP1Q9Y5U9 82 aa12.09□□□□□ -0.47
LDLR-203ENST00000535915 TP53BP1Q12888 1972 aaPredicted RBP12.09□□□□□ -0.47
LDLR-203ENST00000535915 MCIDASD6RGH6 385 aa12.09□□□□□ -0.47
LDLR-203ENST00000535915 LRRN3E7EW58 273 aa12.09□□□□□ -0.47
LDLR-203ENST00000535915 ORC5O43913 435 aa12.09□□□□□ -0.47
LDLR-203ENST00000535915 SC5DO75845 299 aa12.09□□□□□ -0.47
LDLR-203ENST00000535915 RBMS1P29558 406 aaKnown RBP12.09□□□□□ -0.47
LDLR-203ENST00000535915 RPL4P36578 427 aaKnown RBP12.09□□□□□ -0.47
LDLR-203ENST00000535915 PITPNBP48739 271 aa12.09□□□□□ -0.47
LDLR-203ENST00000535915 PGDP52209 483 aa12.09□□□□□ -0.47
LDLR-203ENST00000535915 FZD2Q14332 565 aa12.09□□□□□ -0.47
LDLR-203ENST00000535915 SLC25A35Q3KQZ1 300 aa12.09□□□□□ -0.47
LDLR-203ENST00000535915 LINC00114Q6XXX2 140 aa12.09□□□□□ -0.47
LDLR-203ENST00000535915 PXKQ7Z7A4 578 aa12.09□□□□□ -0.47
LDLR-203ENST00000535915 ARHGEF39Q8N4T4 335 aa12.09□□□□□ -0.47
LDLR-203ENST00000535915 MS4A15Q8N5U1 240 aa12.09□□□□□ -0.47
LDLR-203ENST00000535915 RFT1Q96AA3 541 aa12.09□□□□□ -0.47
LDLR-203ENST00000535915 DGAT2Q96PD7 388 aa12.09□□□□□ -0.47
LDLR-203ENST00000535915 MARVELD1Q9BSK0 173 aa12.09□□□□□ -0.47
LDLR-203ENST00000535915 LRRN3Q9H3W5 708 aa12.09□□□□□ -0.47
LDLR-203ENST00000535915 C8orf33Q9H7E9 229 aaPredicted RBP12.09□□□□□ -0.47
LDLR-203ENST00000535915 SERTAD3Q9UJW9 196 aa12.09□□□□□ -0.47
LDLR-203ENST00000535915 OR10H1Q9Y4A9 318 aa12.09□□□□□ -0.47
LDLR-203ENST00000535915 EML5Q05BV3 1969 aa12.09□□□□□ -0.47
LDLR-203ENST00000535915 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.08□□□□□ -0.48
LDLR-203ENST00000535915 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.08□□□□□ -0.48
LDLR-203ENST00000535915 A0A1W2PPK0 400 aa12.08□□□□□ -0.48
LDLR-203ENST00000535915 LANCL1O43813 399 aa12.08□□□□□ -0.48
LDLR-203ENST00000535915 PRAMEF2O60811 474 aa12.08□□□□□ -0.48
LDLR-203ENST00000535915 CSTAP01040 98 aa12.08□□□□□ -0.48
LDLR-203ENST00000535915 TFP02787 698 aa12.08□□□□□ -0.48
LDLR-203ENST00000535915 ATXN8OSP0DMR3 200 aa12.08□□□□□ -0.48
LDLR-203ENST00000535915 RAB3BP20337 219 aa12.08□□□□□ -0.48
LDLR-203ENST00000535915 NAA10P41227 235 aaPredicted RBP12.08□□□□□ -0.48
LDLR-203ENST00000535915 CAPZA2P47755 286 aa12.08□□□□□ -0.48
LDLR-203ENST00000535915 GPR143P51810 404 aa12.08□□□□□ -0.48
LDLR-203ENST00000535915 BTG2P78543 158 aa12.08□□□□□ -0.48
LDLR-203ENST00000535915 ZNF141Q15928 474 aa12.08□□□□□ -0.48
LDLR-203ENST00000535915 GHDCQ8N2G8 530 aa12.08□□□□□ -0.48
LDLR-203ENST00000535915 SLC43A2Q8N370 569 aa12.08□□□□□ -0.48
LDLR-203ENST00000535915 YIPF7Q8N8F6 280 aa12.08□□□□□ -0.48
LDLR-203ENST00000535915 SGTBQ96EQ0 304 aa12.08□□□□□ -0.48
LDLR-203ENST00000535915 TOE1Q96GM8 510 aaKnown RBP12.08□□□□□ -0.48
LDLR-203ENST00000535915 CITED4Q96RK1 184 aa12.08□□□□□ -0.48
LDLR-203ENST00000535915 CNN2Q99439 309 aaKnown RBP12.08□□□□□ -0.48
LDLR-203ENST00000535915 G6PC3Q9BUM1 346 aa12.08□□□□□ -0.48
LDLR-203ENST00000535915 PRTFDC1Q9NRG1 225 aa12.08□□□□□ -0.48
LDLR-203ENST00000535915 STMN3Q9NZ72 180 aa12.08□□□□□ -0.48
LDLR-203ENST00000535915 LRIT1Q9P2V4 623 aa12.08□□□□□ -0.48
LDLR-203ENST00000535915 ADAM18Q9Y3Q7 739 aa12.08□□□□□ -0.48
LDLR-203ENST00000535915 A0A0G2JK05 382 aa12.08□□□□□ -0.48
LDLR-203ENST00000535915 CTNSO60931 367 aa12.08□□□□□ -0.48
LDLR-203ENST00000535915 SLC43A1O75387 559 aa12.08□□□□□ -0.48
LDLR-203ENST00000535915 NPR2P20594 1047 aa12.08□□□□□ -0.48
LDLR-203ENST00000535915 ATP12AP54707 1039 aa12.08□□□□□ -0.48
LDLR-203ENST00000535915 RAB25P57735 213 aa12.08□□□□□ -0.48
LDLR-203ENST00000535915 SKP1P63208 163 aa12.08□□□□□ -0.48
LDLR-203ENST00000535915 KIAA0895LQ68EN5 471 aa12.08□□□□□ -0.48
LDLR-203ENST00000535915 GDF15Q99988 308 aa12.08□□□□□ -0.48
LDLR-203ENST00000535915 RABL2AQ9UBK7 228 aaPredicted RBP12.08□□□□□ -0.48
LDLR-203ENST00000535915 ST6GALNAC2Q9UJ37 374 aa12.08□□□□□ -0.48
LDLR-203ENST00000535915 KLHL21Q9UJP4 597 aa12.08□□□□□ -0.48
LDLR-203ENST00000535915 ERVK-19Q9WJR5 959 aa12.08□□□□□ -0.48
LDLR-203ENST00000535915 SPEF1Q9Y4P9 236 aa12.08□□□□□ -0.48
LDLR-203ENST00000535915 MAU2Q9Y6X3 613 aa12.08□□□□□ -0.48
LDLR-203ENST00000535915 INMT-MINDY4F8WBC2 141 aa12.07□□□□□ -0.48
LDLR-203ENST00000535915 GUSBP08236 651 aa12.07□□□□□ -0.48
LDLR-203ENST00000535915 ARSBP15848 533 aa12.07□□□□□ -0.48
LDLR-203ENST00000535915 PPM1FP49593 454 aaPredicted RBP12.07□□□□□ -0.48
LDLR-203ENST00000535915 ACTA2P62736 377 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms