RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 POTEKPQ9BYX7 375 aa11.57□□□□□ -0.56
VPS28-216ENST00000533806 FAM107BQ9H098 131 aa11.57□□□□□ -0.56
VPS28-216ENST00000533806 OPN3Q9H1Y3 402 aaPredicted RBP11.57□□□□□ -0.56
VPS28-216ENST00000533806 EVA1AQ9H8M9 152 aa11.57□□□□□ -0.56
VPS28-216ENST00000533806 BCO1Q9HAY6 547 aa11.57□□□□□ -0.56
VPS28-216ENST00000533806 SLC24A3Q9HC58 644 aa11.57□□□□□ -0.56
VPS28-216ENST00000533806 GALNT8Q9NY28 637 aa11.57□□□□□ -0.56
VPS28-216ENST00000533806 CLEC4AQ9UMR7 237 aa11.57□□□□□ -0.56
VPS28-216ENST00000533806 USP22Q9UPT9 525 aa11.57□□□□□ -0.56
VPS28-216ENST00000533806 ANGPT4Q9Y264 503 aa11.57□□□□□ -0.56
VPS28-216ENST00000533806 CSMD2Q7Z408 3487 aa11.57□□□□□ -0.56
VPS28-216ENST00000533806 POLQO75417 2590 aa11.56□□□□□ -0.56
VPS28-216ENST00000533806 IGHV3-15A0A0B4J1V0 119 aa11.56□□□□□ -0.56
VPS28-216ENST00000533806 FAM221AA4D161 298 aa11.56□□□□□ -0.56
VPS28-216ENST00000533806 SULT2B1O00204 365 aa11.56□□□□□ -0.56
VPS28-216ENST00000533806 LGI1O95970 557 aa11.56□□□□□ -0.56
VPS28-216ENST00000533806 IMPDH2P12268 514 aa11.56□□□□□ -0.56
VPS28-216ENST00000533806 CD247P20963 164 aa11.56□□□□□ -0.56
VPS28-216ENST00000533806 AGTR1P30556 359 aa11.56□□□□□ -0.56
VPS28-216ENST00000533806 COPZ1P61923 177 aa11.56□□□□□ -0.56
VPS28-216ENST00000533806 CSNK2A1P68400 391 aaPredicted RBP11.56□□□□□ -0.56
VPS28-216ENST00000533806 SNTB1Q13884 538 aaKnown RBP11.56□□□□□ -0.56
VPS28-216ENST00000533806 VEZF1Q14119 521 aa11.56□□□□□ -0.56
VPS28-216ENST00000533806 PDK3Q15120 406 aa11.56□□□□□ -0.56
VPS28-216ENST00000533806 NRF1Q16656 503 aa11.56□□□□□ -0.56
VPS28-216ENST00000533806 ABLIM2Q6H8Q1 611 aa11.56□□□□□ -0.56
VPS28-216ENST00000533806 HACD2Q6Y1H2 254 aa11.56□□□□□ -0.56
VPS28-216ENST00000533806 PATL1Q86TB9 770 aaKnown RBP11.56□□□□□ -0.56
VPS28-216ENST00000533806 TUSC5Q8IXB3 177 aa11.56□□□□□ -0.56
VPS28-216ENST00000533806 SLC15A3Q8IY34 581 aa11.56□□□□□ -0.56
VPS28-216ENST00000533806 TAMM41Q96BW9 452 aa11.56□□□□□ -0.56
VPS28-216ENST00000533806 REXO5Q96IC2 774 aaKnown RBP11.56□□□□□ -0.56
VPS28-216ENST00000533806 PRR14Q9BWN1 585 aa11.56□□□□□ -0.56
VPS28-216ENST00000533806 NSRP1Q9H0G5 558 aaKnown RBP11.56□□□□□ -0.56
VPS28-216ENST00000533806 PIF1Q9H611 641 aa11.56□□□□□ -0.56
VPS28-216ENST00000533806 CACYBPQ9HB71 228 aaKnown RBP11.56□□□□□ -0.56
VPS28-216ENST00000533806 CMTM6Q9NX76 183 aa11.56□□□□□ -0.56
VPS28-216ENST00000533806 TMEM181Q9P2C4 612 aa11.56□□□□□ -0.56
VPS28-216ENST00000533806 KLHL13Q9P2N7 655 aa11.56□□□□□ -0.56
VPS28-216ENST00000533806 EMC9Q9Y3B6 208 aa11.56□□□□□ -0.56
VPS28-216ENST00000533806 HRNRQ86YZ3 2850 aaPredicted RBP11.56□□□□□ -0.56
VPS28-216ENST00000533806 IGKV3D-15A0A087WSY6 115 aa11.55□□□□□ -0.56
VPS28-216ENST00000533806 ZNF716A6NP11 495 aa11.55□□□□□ -0.56
VPS28-216ENST00000533806 ZNF814B7Z6K7 855 aa11.55□□□□□ -0.56
VPS28-216ENST00000533806 FZD7O75084 574 aa11.55□□□□□ -0.56
VPS28-216ENST00000533806 SMNDC1O75940 238 aaKnown RBP eCLIP11.55□□□□□ -0.56
VPS28-216ENST00000533806 FESP07332 822 aa11.55□□□□□ -0.56
VPS28-216ENST00000533806 YES1P07947 543 aa11.55□□□□□ -0.56
VPS28-216ENST00000533806 TFPIP10646 304 aa11.55□□□□□ -0.56
VPS28-216ENST00000533806 CCNA2P20248 432 aa11.55□□□□□ -0.56
VPS28-216ENST00000533806 PRDX6P30041 224 aa11.55□□□□□ -0.56
VPS28-216ENST00000533806 SSTR2P30874 369 aa11.55□□□□□ -0.56
VPS28-216ENST00000533806 KIR2DL3P43628 341 aa11.55□□□□□ -0.56
VPS28-216ENST00000533806 EGR4Q05215 589 aa11.55□□□□□ -0.56
VPS28-216ENST00000533806 FAM27E3Q08E93 113 aa11.55□□□□□ -0.56
VPS28-216ENST00000533806 DAZAP2Q15038 168 aaPredicted RBP11.55□□□□□ -0.56
VPS28-216ENST00000533806 NPTX1Q15818 432 aa11.55□□□□□ -0.56
VPS28-216ENST00000533806 NUFIP2Q7Z417 695 aaKnown RBP11.55□□□□□ -0.56
VPS28-216ENST00000533806 GDF7Q7Z4P5 450 aa11.55□□□□□ -0.56
VPS28-216ENST00000533806 KIF18BQ86Y91 864 aa11.55□□□□□ -0.56
VPS28-216ENST00000533806 CADM2Q8N3J6 435 aa11.55□□□□□ -0.56
VPS28-216ENST00000533806 ANKS4BQ8N8V4 417 aa11.55□□□□□ -0.56
VPS28-216ENST00000533806 SMYD1Q8NB12 490 aa11.55□□□□□ -0.56
VPS28-216ENST00000533806 OR4D11Q8NGI4 311 aa11.55□□□□□ -0.56
VPS28-216ENST00000533806 DDIT4LQ96D03 193 aa11.55□□□□□ -0.56
VPS28-216ENST00000533806 LRRC46Q96FV0 321 aa11.55□□□□□ -0.56
VPS28-216ENST00000533806 ARHGDIGQ99819 225 aa11.55□□□□□ -0.56
VPS28-216ENST00000533806 HOPXQ9BPY8 73 aaPredicted RBP11.55□□□□□ -0.56
VPS28-216ENST00000533806 ECSITQ9BQ95 431 aa11.55□□□□□ -0.56
VPS28-216ENST00000533806 EFCAB1Q9HAE3 211 aa11.55□□□□□ -0.56
VPS28-216ENST00000533806 C12orf10Q9HB07 376 aa11.55□□□□□ -0.56
VPS28-216ENST00000533806 ELOVL5Q9NYP7 299 aa11.55□□□□□ -0.56
VPS28-216ENST00000533806 CRIM1Q9NZV1 1036 aa11.55□□□□□ -0.56
VPS28-216ENST00000533806 PROCRQ9UNN8 238 aa11.55□□□□□ -0.56
VPS28-216ENST00000533806 A0A1B0GWA3 101 aa11.54□□□□□ -0.56
VPS28-216ENST00000533806 LIPT2A6NK58 231 aa11.54□□□□□ -0.56
VPS28-216ENST00000533806 CCT8L1PA6NM43 557 aa11.54□□□□□ -0.56
VPS28-216ENST00000533806 ZNF724A8MTY0 619 aa11.54□□□□□ -0.56
VPS28-216ENST00000533806 A8MVM7 634 aa11.54□□□□□ -0.56
VPS28-216ENST00000533806 FAM220BPB1ANY3 271 aa11.54□□□□□ -0.56
VPS28-216ENST00000533806 AIM2O14862 343 aa11.54□□□□□ -0.56
VPS28-216ENST00000533806 FMO6PO60774 539 aa11.54□□□□□ -0.56
VPS28-216ENST00000533806 RAMP1O60894 148 aa11.54□□□□□ -0.56
VPS28-216ENST00000533806 PLGP00747 810 aaPredicted RBP11.54□□□□□ -0.56
VPS28-216ENST00000533806 OPN1SWP03999 348 aa11.54□□□□□ -0.56
VPS28-216ENST00000533806 CXCR1P25024 350 aa11.54□□□□□ -0.56
VPS28-216ENST00000533806 CCKARP32238 428 aa11.54□□□□□ -0.56
VPS28-216ENST00000533806 NTF4P34130 210 aa11.54□□□□□ -0.56
VPS28-216ENST00000533806 CD79BP40259 229 aa11.54□□□□□ -0.56
VPS28-216ENST00000533806 P2RY4P51582 365 aa11.54□□□□□ -0.56
VPS28-216ENST00000533806 SLC16A1P53985 500 aa11.54□□□□□ -0.56
VPS28-216ENST00000533806 CTBP2P56545 445 aa11.54□□□□□ -0.56
VPS28-216ENST00000533806 RASGEF1BQ0VAM2 473 aa11.54□□□□□ -0.56
VPS28-216ENST00000533806 BNIP2Q12982 314 aa11.54□□□□□ -0.56
VPS28-216ENST00000533806 INTS11Q5TA45 600 aaKnown RBP11.54□□□□□ -0.56
VPS28-216ENST00000533806 FAM91A1Q658Y4 838 aa11.54□□□□□ -0.56
VPS28-216ENST00000533806 PPP4R4Q6NUP7 873 aa11.54□□□□□ -0.56
VPS28-216ENST00000533806 ERICH5Q6P6B1 374 aa11.54□□□□□ -0.56
VPS28-216ENST00000533806 STK35Q8TDR2 534 aa11.54□□□□□ -0.56
VPS28-216ENST00000533806 FAM222BQ8WU58 562 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms