RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 PRELID3BQ9Y3B1 194 aa13.12□□□□□ -0.31
USP48-213ENST00000529637 KIAA1549LQ6ZVL6 1849 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 PRR23D1E9PI22 279 aaPredicted RBP13.11□□□□□ -0.31
USP48-213ENST00000529637 EMC8O43402 210 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 PRR23D2P0DMB1 279 aaPredicted RBP13.11□□□□□ -0.31
USP48-213ENST00000529637 CLUP10909 449 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 PAICSP22234 425 aaKnown RBP13.11□□□□□ -0.31
USP48-213ENST00000529637 GCGRP47871 477 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 EIF2B5Q13144 721 aaKnown RBP13.11□□□□□ -0.31
USP48-213ENST00000529637 APOOLQ6UXV4 268 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 RTL10Q7L3V2 364 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 RFLNBQ8N5W9 214 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 OR2L3Q8NG85 312 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 OR5J2Q8NH18 312 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 OR52I2Q8NH67 350 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 C4orf36Q96KX1 117 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 PGLYRP3Q96LB9 341 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 DERL3Q96Q80 235 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 MCHR1Q99705 422 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 TEX12Q9BXU0 123 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 TRIM36Q9NQ86 728 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 MED9Q9NWA0 146 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 ZMAT5Q9UDW3 170 aaKnown RBP13.11□□□□□ -0.31
USP48-213ENST00000529637 GLS2Q9UI32 602 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 MDC1Q14676 2089 aaKnown RBP13.11□□□□□ -0.31
USP48-213ENST00000529637 ZGLP1P0C6A0 271 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 CMPK1P30085 196 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 S100A11P31949 105 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 HCCSP53701 268 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 EPHA4P54764 986 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 TRA2BP62995 288 aaKnown RBP13.11□□□□□ -0.31
USP48-213ENST00000529637 DHODHQ02127 395 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 ST3GAL3Q11203 375 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 TMEM240Q5SV17 173 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 CDC73Q6P1J9 531 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 TMUB2Q71RG4 321 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 PXKQ7Z7A4 578 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 SLITRK4Q8IW52 837 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 LINC00471Q8N535 108 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 SCARB1Q8WTV0 552 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 SMIM4Q8WVI0 70 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 DIO2Q92813 273 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 GHSRQ92847 366 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 ARSGQ96EG1 525 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 SLC38A3Q99624 504 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 PINK1Q9BXM7 581 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 PRDM7Q9NQW5 492 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 FBXL4Q9UKA2 621 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 ZNF860A6NHJ4 632 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 UCHL1P09936 223 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 EPXP11678 715 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 STPG1Q5TH74 334 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 SSX6Q7RTT6 188 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 UBE2Q1Q7Z7E8 422 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 CMTM4Q8IZR5 234 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 MEIOBQ8N635 442 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 LGALS14Q8TCE9 139 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 LRRC46Q96FV0 321 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 KXD1Q9BQD3 176 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 TEX101Q9BY14 249 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 NOX3Q9HBY0 568 aa13.11□□□□□ -0.31
USP48-213ENST00000529637 APOBEC3BQ9UH17 382 aaKnown RBP13.11□□□□□ -0.31
USP48-213ENST00000529637 OR2M5A3KFT3 312 aa13.1□□□□□ -0.31
USP48-213ENST00000529637 CACNB4O00305 520 aaPredicted RBP13.1□□□□□ -0.31
USP48-213ENST00000529637 PLPP2O43688 288 aa13.1□□□□□ -0.31
USP48-213ENST00000529637 NARSO43776 548 aaKnown RBP13.1□□□□□ -0.31
USP48-213ENST00000529637 B3GALNT1O75752 331 aa13.1□□□□□ -0.31
USP48-213ENST00000529637 SC5DO75845 299 aa13.1□□□□□ -0.31
USP48-213ENST00000529637 SPDEFO95238 335 aa13.1□□□□□ -0.31
USP48-213ENST00000529637 GABRA1P14867 456 aa13.1□□□□□ -0.31
USP48-213ENST00000529637 LINC00303Q3SY05 128 aa13.1□□□□□ -0.31
USP48-213ENST00000529637 ZNF620Q6ZNG0 422 aa13.1□□□□□ -0.31
USP48-213ENST00000529637 SLC16A11Q8NCK7 471 aa13.1□□□□□ -0.31
USP48-213ENST00000529637 OR5M1Q8NGP8 315 aa13.1□□□□□ -0.31
USP48-213ENST00000529637 OR2L8Q8NGY9 312 aa13.1□□□□□ -0.31
USP48-213ENST00000529637 OSTF1Q92882 214 aa13.1□□□□□ -0.31
USP48-213ENST00000529637 PITHD1Q9GZP4 211 aaPredicted RBP13.1□□□□□ -0.31
USP48-213ENST00000529637 OR51V1Q9H2C8 321 aa13.1□□□□□ -0.31
USP48-213ENST00000529637 SLC38A1Q9H2H9 487 aa13.1□□□□□ -0.31
USP48-213ENST00000529637 UBQLN3Q9H347 655 aa13.1□□□□□ -0.31
USP48-213ENST00000529637 FXYD6-FXYD2A0A087WZ82 144 aa13.1□□□□□ -0.31
USP48-213ENST00000529637 MST1P26927 711 aa13.1□□□□□ -0.31
USP48-213ENST00000529637 AK4P27144 223 aaPredicted RBP13.1□□□□□ -0.31
USP48-213ENST00000529637 PYCR1P32322 319 aa13.1□□□□□ -0.31
USP48-213ENST00000529637 PDX1P52945 283 aa13.1□□□□□ -0.31
USP48-213ENST00000529637 SEC61A1P61619 476 aaKnown RBP13.1□□□□□ -0.31
USP48-213ENST00000529637 GPM6BQ13491 265 aa13.1□□□□□ -0.31
USP48-213ENST00000529637 DYRK1AQ13627 763 aa13.1□□□□□ -0.31
USP48-213ENST00000529637 SLC48A1Q6P1K1 146 aa13.1□□□□□ -0.31
USP48-213ENST00000529637 NIPAL3Q6P499 406 aa13.1□□□□□ -0.31
USP48-213ENST00000529637 OR2T33Q8NG76 320 aa13.1□□□□□ -0.31
USP48-213ENST00000529637 OR10G6Q8NH81 332 aa13.1□□□□□ -0.31
USP48-213ENST00000529637 KISS1RQ969F8 398 aaPredicted RBP13.1□□□□□ -0.31
USP48-213ENST00000529637 ELP4Q96EB1 424 aa13.1□□□□□ -0.31
USP48-213ENST00000529637 PELOQ9BRX2 385 aaKnown RBP13.1□□□□□ -0.31
USP48-213ENST00000529637 FXYD6Q9H0Q3 95 aa13.1□□□□□ -0.31
USP48-213ENST00000529637 SLC6A15Q9H2J7 730 aa13.1□□□□□ -0.31
USP48-213ENST00000529637 BCL2L10Q9HD36 194 aa13.1□□□□□ -0.31
USP48-213ENST00000529637 OR6C65A6NJZ3 312 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 SDC3O75056 442 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms