RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 DGCR6Q14129 220 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 OR1Q1Q15612 314 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 NPTX1Q15818 432 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 ATP6AP1Q15904 470 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 SLC25A53Q5H9E4 307 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 COLEC12Q5KU26 742 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 ENTPD8Q5MY95 495 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 RPUSD3Q6P087 351 aaKnown RBP6.71□□□□□ -1.34
CD44-228ENST00000528455 SPATC1Q76KD6 591 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 HMGN2P46Q86SG4 172 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 COMTD1Q86VU5 262 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 LACC1Q8IV20 430 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 PQLC1Q8N2U9 271 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 LINC00471Q8N535 108 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 PIK3C3Q8NEB9 887 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 CATSPER1Q8NEC5 780 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 OR2M7Q8NG81 312 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 ADAMTS16Q8TE57 1224 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 LRTOMTQ8WZ04 291 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 ST8SIA1Q92185 356 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 SLC38A4Q969I6 547 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 CCDC120Q96HB5 630 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 MPP4Q96JB8 637 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 HS6ST2Q96MM7 605 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 PIP5K1AQ99755 562 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 FNDC11Q9BVV2 318 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 CDADC1Q9BWV3 514 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 OSBPL11Q9BXB4 747 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 RNPEPL1Q9HAU8 725 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 NTN4Q9HB63 628 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 ZNF71Q9NQZ8 489 aaPredicted RBP6.71□□□□□ -1.34
CD44-228ENST00000528455 MED11Q9P086 117 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 PPP4R1LQ9P1A2 415 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 RPS6KB2Q9UBS0 482 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 BOKQ9UMX3 212 aaPredicted RBP6.71□□□□□ -1.34
CD44-228ENST00000528455 KLF13Q9Y2Y9 288 aaPredicted RBP6.71□□□□□ -1.34
CD44-228ENST00000528455 V9GYQ6 96 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 FREM3P0C091 2139 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 TNFSF12-TNFSF13A0A0A6YY99 330 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 hCG_2039718K7EN88 272 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 M0R3H8 397 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 SCO2O43819 266 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 PEX1O43933 1283 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 ZIC3O60481 467 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 CDC40O60508 579 aaKnown RBP eCLIP6.7□□□□□ -1.34
CD44-228ENST00000528455 BCAS1O75363 584 aaPredicted RBP6.7□□□□□ -1.34
CD44-228ENST00000528455 SLC25A12O75746 678 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 GADD45GO95257 159 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 ATP6V1G2O95670 118 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 BAG2O95816 211 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 IGF2P01344 180 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 H1F0P07305 194 aaKnown RBP6.7□□□□□ -1.34
CD44-228ENST00000528455 PNMTP11086 282 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 GP1BBP13224 206 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 RRM2P31350 389 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 RYKP34925 604 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 EIF1P41567 113 aaKnown RBP6.7□□□□□ -1.34
CD44-228ENST00000528455 LIMS1P48059 325 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 CLK1P49759 484 aaKnown RBP6.7□□□□□ -1.34
CD44-228ENST00000528455 SESN3P58005 492 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 TAS2R41P59536 307 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 FOXO1Q12778 655 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 RAPSNQ13702 412 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 GANABQ14697 944 aaKnown RBP6.7□□□□□ -1.34
CD44-228ENST00000528455 TRAM2Q15035 370 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 RCN1Q15293 331 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 ZNF766Q5HY98 468 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 BICRALQ6AI39 1079 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 GTF2IRD2BQ6EKJ0 949 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 OR5M10Q6IEU7 315 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 Q6ZS92 163 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 GTF2IRD2Q86UP8 949 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 LILRA2Q8N149 483 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 SVOPLQ8N434 492 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 GATSQ8NAP1 163 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 ZFP62Q8NB50 900 aaPredicted RBP6.7□□□□□ -1.34
CD44-228ENST00000528455 OR2M3Q8NG83 312 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 ZNF563Q8TA94 476 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 VANGL1Q8TAA9 524 aaPredicted RBP6.7□□□□□ -1.34
CD44-228ENST00000528455 ZBTB8AQ96BR9 441 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 C1GALT1C1Q96EU7 318 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 SLC41A3Q96GZ6 507 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 MAP6Q96JE9 813 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 MRGPRX4Q96LA9 322 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 PRRC1Q96M27 445 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 C5orf34Q96MH7 638 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 GNRHR2Q96P88 292 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 EPYCQ99645 322 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 PKP2Q99959 881 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 DSN1Q9H410 356 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 REEP1Q9H902 201 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 GALNT9Q9HCQ5 603 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 C8orf4Q9NR00 106 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 DEPPQ9NTK1 212 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 ERVK13-1Q9NX77 482 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 QPCTLQ9NXS2 382 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 SELENONQ9NZV5 590 aa6.7□□□□□ -1.34
CD44-228ENST00000528455 PRRC2CQ9Y520 2896 aaKnown RBP6.7□□□□□ -1.34
CD44-228ENST00000528455 MYO18BQ8IUG5 2567 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 FLNBO75369 2602 aaKnown RBP6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms