RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 ISLR2Q6UXK2 745 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 CEACAM20Q6UY09 585 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 LCNL1Q6ZST4 164 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 TTLL10Q6ZVT0 673 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 OLIG3Q7RTU3 272 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 C6orf120Q7Z4R8 191 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 PRSS42Q7Z5A4 293 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 VTCN1Q7Z7D3 282 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 HMGN2P46Q86SG4 172 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 SERPINA11Q86U17 422 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 TMEM200AQ86VY9 491 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 MCEMP1Q8IX19 187 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 D2HGDHQ8N465 521 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 NATD1Q8N6N6 113 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 ZNF321PQ8N8H1 164 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 ICA1LQ8NDH6 482 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 C7orf57Q8NEG2 295 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 OR4K14Q8NGD5 310 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 OR56A1Q8NGH5 318 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 OR5D16Q8NGK9 328 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 SFXN5Q8TD22 340 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 NPIPB3Q92617 1050 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 RAB8BQ92930 207 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 NAT6Q93015 286 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 ANKRD9Q96BM1 317 aaPredicted RBP3.84□□□□□ -1.79
CD44-226ENST00000527889 PPWD1Q96BP3 646 aaKnown RBP3.84□□□□□ -1.79
CD44-226ENST00000527889 MMABQ96EY8 250 aaPredicted RBP3.84□□□□□ -1.79
CD44-226ENST00000527889 SLC47A1Q96FL8 570 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 C16orf58Q96GQ5 468 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 SLC41A2Q96JW4 573 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 C7orf34Q96L11 122 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 ADAD1Q96M93 576 aaKnown RBP3.84□□□□□ -1.79
CD44-226ENST00000527889 RNF145Q96MT1 663 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 ZNF681Q96N22 645 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 NR1H4Q96RI1 486 aaPredicted RBP3.84□□□□□ -1.79
CD44-226ENST00000527889 OR51I1Q9H343 314 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 RAD21L1Q9H4I0 556 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 CUTCQ9NTM9 273 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 SLC35D1Q9NTN3 355 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 ACSS1Q9NUB1 689 aaPredicted RBP3.84□□□□□ -1.79
CD44-226ENST00000527889 ZCCHC3Q9NUD5 404 aaKnown RBP3.84□□□□□ -1.79
CD44-226ENST00000527889 DDX28Q9NUL7 540 aaKnown RBP3.84□□□□□ -1.79
CD44-226ENST00000527889 TAS2R7Q9NYW3 318 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 DHCR7Q9UBM7 475 aaKnown RBP3.84□□□□□ -1.79
CD44-226ENST00000527889 TRPC4Q9UBN4 977 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 STEAP1Q9UHE8 339 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 RIMS3Q9UJD0 308 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 FAF1Q9UNN5 650 aaPredicted RBP3.84□□□□□ -1.79
CD44-226ENST00000527889 AP3M1Q9Y2T2 418 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 UBE2J1Q9Y385 318 aaPredicted RBP3.84□□□□□ -1.79
CD44-226ENST00000527889 ZNF780BQ9Y6R6 833 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 SPACA6W5XKT8 324 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 PRR14LQ5THK1 2151 aa3.83□□□□□ -1.8
CD44-226ENST00000527889 SH2D7A6NKC9 451 aaPredicted RBP3.83□□□□□ -1.8
CD44-226ENST00000527889 D6RAR5 112 aa3.83□□□□□ -1.8
CD44-226ENST00000527889 PTGES3LE9PB15 166 aa3.83□□□□□ -1.8
CD44-226ENST00000527889 F5H697 171 aa3.83□□□□□ -1.8
CD44-226ENST00000527889 H3BMH7 237 aa3.83□□□□□ -1.8
CD44-226ENST00000527889 HMGN4O00479 90 aa3.83□□□□□ -1.8
CD44-226ENST00000527889 DSCR3O14972 297 aa3.83□□□□□ -1.8
CD44-226ENST00000527889 ZNF749O43361 778 aa3.83□□□□□ -1.8
CD44-226ENST00000527889 EMC8O43402 210 aa3.83□□□□□ -1.8
CD44-226ENST00000527889 SLC28A2O43868 658 aa3.83□□□□□ -1.8
CD44-226ENST00000527889 GMFGO60234 142 aa3.83□□□□□ -1.8
CD44-226ENST00000527889 GCM2O75603 506 aaPredicted RBP3.83□□□□□ -1.8
CD44-226ENST00000527889 C1QL1O75973 258 aa3.83□□□□□ -1.8
CD44-226ENST00000527889 DIRAS1O95057 198 aa3.83□□□□□ -1.8
CD44-226ENST00000527889 ZFPL1O95159 310 aa3.83□□□□□ -1.8
CD44-226ENST00000527889 NSA2O95478 260 aaKnown RBP3.83□□□□□ -1.8
CD44-226ENST00000527889 LDOC1O95751 146 aaPredicted RBP3.83□□□□□ -1.8
CD44-226ENST00000527889 GPR75O95800 540 aa3.83□□□□□ -1.8
CD44-226ENST00000527889 HMGN2P05204 90 aaKnown RBP3.83□□□□□ -1.8
CD44-226ENST00000527889 BCHEP06276 602 aa3.83□□□□□ -1.8
CD44-226ENST00000527889 GPIP06744 558 aa3.83□□□□□ -1.8
CD44-226ENST00000527889 RETP07949 1114 aa3.83□□□□□ -1.8
CD44-226ENST00000527889 FHP07954 510 aa3.83□□□□□ -1.8
CD44-226ENST00000527889 CT62P0C5K7 136 aa3.83□□□□□ -1.8
CD44-226ENST00000527889 NR2F1P10589 423 aa3.83□□□□□ -1.8
CD44-226ENST00000527889 UMPSP11172 480 aa3.83□□□□□ -1.8
CD44-226ENST00000527889 PEPDP12955 493 aa3.83□□□□□ -1.8
CD44-226ENST00000527889 CKMT2P17540 419 aa3.83□□□□□ -1.8
CD44-226ENST00000527889 CCNA2P20248 432 aa3.83□□□□□ -1.8
CD44-226ENST00000527889 TNFRSF1BP20333 461 aa3.83□□□□□ -1.8
CD44-226ENST00000527889 MAOAP21397 527 aa3.83□□□□□ -1.8
CD44-226ENST00000527889 NT5EP21589 574 aa3.83□□□□□ -1.8
CD44-226ENST00000527889 MATN1P21941 496 aa3.83□□□□□ -1.8
CD44-226ENST00000527889 FBLP22087 321 aaKnown RBP3.83□□□□□ -1.8
CD44-226ENST00000527889 PPP2R1BP30154 601 aa3.83□□□□□ -1.8
CD44-226ENST00000527889 KDELR2P33947 212 aa3.83□□□□□ -1.8
CD44-226ENST00000527889 GCKP35557 465 aa3.83□□□□□ -1.8
CD44-226ENST00000527889 ACAA2P42765 397 aaKnown RBP3.83□□□□□ -1.8
CD44-226ENST00000527889 XCR1P46094 333 aa3.83□□□□□ -1.8
CD44-226ENST00000527889 AVPR1BP47901 424 aa3.83□□□□□ -1.8
CD44-226ENST00000527889 KHKP50053 298 aa3.83□□□□□ -1.8
CD44-226ENST00000527889 DUSP3P51452 185 aaPredicted RBP3.83□□□□□ -1.8
CD44-226ENST00000527889 LUMP51884 338 aaPredicted RBP3.83□□□□□ -1.8
CD44-226ENST00000527889 CRYBA2P53672 197 aa3.83□□□□□ -1.8
CD44-226ENST00000527889 AQP4P55087 323 aa3.83□□□□□ -1.8
CD44-226ENST00000527889 FOXL2P58012 376 aa3.83□□□□□ -1.8
CD44-226ENST00000527889 VBP1P61758 197 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms