RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 ACTA2P62736 377 aa10.18□□□□□ -0.78
HDAC9-228ENST00000524023 ACTG2P63267 376 aa10.18□□□□□ -0.78
HDAC9-228ENST00000524023 SIRPAP78324 504 aa10.18□□□□□ -0.78
HDAC9-228ENST00000524023 DGCR2P98153 550 aa10.18□□□□□ -0.78
HDAC9-228ENST00000524023 ILF3Q12906 894 aaKnown RBP eCLIP10.18□□□□□ -0.78
HDAC9-228ENST00000524023 FAM53BQ14153 422 aa10.18□□□□□ -0.78
HDAC9-228ENST00000524023 GGTLC2Q14390 218 aa10.18□□□□□ -0.78
HDAC9-228ENST00000524023 ZNHIT3Q15649 155 aaPredicted RBP10.18□□□□□ -0.78
HDAC9-228ENST00000524023 TMEM31Q5JXX7 168 aa10.18□□□□□ -0.78
HDAC9-228ENST00000524023 ULK3Q6PHR2 472 aa10.18□□□□□ -0.78
HDAC9-228ENST00000524023 KIRREL2Q6UWL6 708 aa10.18□□□□□ -0.78
HDAC9-228ENST00000524023 SFTPA2Q8IWL1 248 aa10.18□□□□□ -0.78
HDAC9-228ENST00000524023 TOMM5Q8N4H5 51 aa10.18□□□□□ -0.78
HDAC9-228ENST00000524023 POMGNT2Q8NAT1 580 aa10.18□□□□□ -0.78
HDAC9-228ENST00000524023 ZNF784Q8NCA9 323 aaPredicted RBP10.18□□□□□ -0.78
HDAC9-228ENST00000524023 MRGPRX1Q96LB2 322 aa10.18□□□□□ -0.78
HDAC9-228ENST00000524023 CDCA3Q99618 268 aaPredicted RBP10.18□□□□□ -0.78
HDAC9-228ENST00000524023 ST6GALNAC1Q9NSC7 600 aaPredicted RBP10.18□□□□□ -0.78
HDAC9-228ENST00000524023 YBX2Q9Y2T7 364 aaKnown RBP10.18□□□□□ -0.78
HDAC9-228ENST00000524023 IER3IP1Q9Y5U9 82 aa10.18□□□□□ -0.78
HDAC9-228ENST00000524023 NUBP2Q9Y5Y2 271 aa10.18□□□□□ -0.78
HDAC9-228ENST00000524023 USP34Q70CQ2 3546 aa10.18□□□□□ -0.78
HDAC9-228ENST00000524023 MCIDASD6RGH6 385 aa10.18□□□□□ -0.78
HDAC9-228ENST00000524023 GNB5O14775 395 aa10.18□□□□□ -0.78
HDAC9-228ENST00000524023 FABP7O15540 132 aa10.18□□□□□ -0.78
HDAC9-228ENST00000524023 ARL6IP5O75915 188 aa10.18□□□□□ -0.78
HDAC9-228ENST00000524023 TCRBP04435 133 aa10.18□□□□□ -0.78
HDAC9-228ENST00000524023 UCHL1P09936 223 aa10.18□□□□□ -0.78
HDAC9-228ENST00000524023 NAA10P41227 235 aaPredicted RBP10.18□□□□□ -0.78
HDAC9-228ENST00000524023 PPP1CAP62136 330 aa10.18□□□□□ -0.78
HDAC9-228ENST00000524023 YPEL5P62699 121 aa10.18□□□□□ -0.78
HDAC9-228ENST00000524023 UBE2IP63279 158 aaKnown RBP10.18□□□□□ -0.78
HDAC9-228ENST00000524023 TFF2Q03403 129 aa10.18□□□□□ -0.78
HDAC9-228ENST00000524023 CDONQ4KMG0 1287 aa10.18□□□□□ -0.78
HDAC9-228ENST00000524023 KIAA1324Q6UXG2 1013 aaKnown RBP10.18□□□□□ -0.78
HDAC9-228ENST00000524023 SLC35F2Q8IXU6 374 aa10.18□□□□□ -0.78
HDAC9-228ENST00000524023 LRRC17Q8N6Y2 441 aa10.18□□□□□ -0.78
HDAC9-228ENST00000524023 BMPERQ8N8U9 685 aa10.18□□□□□ -0.78
HDAC9-228ENST00000524023 OR7G1Q8NGA0 311 aa10.18□□□□□ -0.78
HDAC9-228ENST00000524023 OR9A4Q8NGU2 314 aa10.18□□□□□ -0.78
HDAC9-228ENST00000524023 SMAD5Q99717 465 aaKnown RBP10.18□□□□□ -0.78
HDAC9-228ENST00000524023 CCDC3Q9BQI4 270 aa10.18□□□□□ -0.78
HDAC9-228ENST00000524023 MFRPQ9BY79 579 aa10.18□□□□□ -0.78
HDAC9-228ENST00000524023 BRD7Q9NPI1 651 aa10.18□□□□□ -0.78
HDAC9-228ENST00000524023 POT1Q9NUX5 634 aa10.18□□□□□ -0.78
HDAC9-228ENST00000524023 HEATR5AQ86XA9 2040 aa10.18□□□□□ -0.78
HDAC9-228ENST00000524023 FAM221BA6H8Z2 402 aa10.17□□□□□ -0.78
HDAC9-228ENST00000524023 GATBO75879 557 aaKnown RBP10.17□□□□□ -0.78
HDAC9-228ENST00000524023 CD1AP06126 327 aa10.17□□□□□ -0.78
HDAC9-228ENST00000524023 CTSBP07858 339 aa10.17□□□□□ -0.78
HDAC9-228ENST00000524023 STOMP27105 288 aa10.17□□□□□ -0.78
HDAC9-228ENST00000524023 PITPNAQ00169 270 aa10.17□□□□□ -0.78
HDAC9-228ENST00000524023 FGFBP1Q14512 234 aa10.17□□□□□ -0.78
HDAC9-228ENST00000524023 ZNF141Q15928 474 aa10.17□□□□□ -0.78
HDAC9-228ENST00000524023 RNASE12Q5GAN4 147 aaKnown RBP10.17□□□□□ -0.78
HDAC9-228ENST00000524023 RPL22L1Q6P5R6 122 aaKnown RBP10.17□□□□□ -0.78
HDAC9-228ENST00000524023 LYPD8Q6UX82 237 aa10.17□□□□□ -0.78
HDAC9-228ENST00000524023 Q6ZSR6 202 aa10.17□□□□□ -0.78
HDAC9-228ENST00000524023 ZNF767PQ75MW2 155 aa10.17□□□□□ -0.78
HDAC9-228ENST00000524023 ZNF550Q7Z398 422 aa10.17□□□□□ -0.78
HDAC9-228ENST00000524023 UBE2Q1Q7Z7E8 422 aa10.17□□□□□ -0.78
HDAC9-228ENST00000524023 SIAH3Q8IW03 269 aa10.17□□□□□ -0.78
HDAC9-228ENST00000524023 C9orf62Q8N4C0 152 aa10.17□□□□□ -0.78
HDAC9-228ENST00000524023 OR14A16Q8NHC5 309 aa10.17□□□□□ -0.78
HDAC9-228ENST00000524023 SNX33Q8WV41 574 aa10.17□□□□□ -0.78
HDAC9-228ENST00000524023 ZNRF4Q8WWF5 429 aa10.17□□□□□ -0.78
HDAC9-228ENST00000524023 PHF21AQ96BD5 680 aa10.17□□□□□ -0.78
HDAC9-228ENST00000524023 SGTBQ96EQ0 304 aa10.17□□□□□ -0.78
HDAC9-228ENST00000524023 ZFP3Q96NJ6 502 aa10.17□□□□□ -0.78
HDAC9-228ENST00000524023 IRF2BPLQ9H1B7 796 aa10.17□□□□□ -0.78
HDAC9-228ENST00000524023 CCDC86Q9H6F5 360 aaKnown RBP10.17□□□□□ -0.78
HDAC9-228ENST00000524023 RPS6KB2Q9UBS0 482 aa10.17□□□□□ -0.78
HDAC9-228ENST00000524023 DTX4Q9Y2E6 619 aa10.17□□□□□ -0.78
HDAC9-228ENST00000524023 MRPS7Q9Y2R9 242 aaKnown RBP10.17□□□□□ -0.78
HDAC9-228ENST00000524023 ADAM18Q9Y3Q7 739 aa10.17□□□□□ -0.78
HDAC9-228ENST00000524023 TRBV2A0A0J9YWF9 115 aa10.16□□□□□ -0.78
HDAC9-228ENST00000524023 TEX13CA0A0J9YWL9 993 aa10.16□□□□□ -0.78
HDAC9-228ENST00000524023 IQCJ-SCHIP1C9J366 451 aaPredicted RBP10.16□□□□□ -0.78
HDAC9-228ENST00000524023 LRRN3E7EW58 273 aa10.16□□□□□ -0.78
HDAC9-228ENST00000524023 NPIPB9F8W1W9 429 aa10.16□□□□□ -0.78
HDAC9-228ENST00000524023 HRKO00198 91 aa10.16□□□□□ -0.78
HDAC9-228ENST00000524023 GIFP27352 417 aa10.16□□□□□ -0.78
HDAC9-228ENST00000524023 CTHP32929 405 aa10.16□□□□□ -0.78
HDAC9-228ENST00000524023 DIO1P49895 249 aa10.16□□□□□ -0.78
HDAC9-228ENST00000524023 PON3Q15166 354 aa10.16□□□□□ -0.78
HDAC9-228ENST00000524023 DEFB110Q30KQ9 67 aa10.16□□□□□ -0.78
HDAC9-228ENST00000524023 CCDC58Q4VC31 144 aa10.16□□□□□ -0.78
HDAC9-228ENST00000524023 C9orf50Q5SZB4 431 aa10.16□□□□□ -0.78
HDAC9-228ENST00000524023 ESPNLQ6ZVH7 1005 aa10.16□□□□□ -0.78
HDAC9-228ENST00000524023 OVCH1Q7RTY7 1134 aa10.16□□□□□ -0.78
HDAC9-228ENST00000524023 SLITRK4Q8IW52 837 aa10.16□□□□□ -0.78
HDAC9-228ENST00000524023 RCBTB1Q8NDN9 531 aa10.16□□□□□ -0.78
HDAC9-228ENST00000524023 OR11H7Q8NGC8 314 aa10.16□□□□□ -0.78
HDAC9-228ENST00000524023 GPBAR1Q8TDU6 330 aa10.16□□□□□ -0.78
HDAC9-228ENST00000524023 RIT1Q92963 219 aa10.16□□□□□ -0.78
HDAC9-228ENST00000524023 VSTM2LQ96N03 204 aa10.16□□□□□ -0.78
HDAC9-228ENST00000524023 OR14A2Q96R54 314 aa10.16□□□□□ -0.78
HDAC9-228ENST00000524023 CACNG6Q9BXT2 260 aa10.16□□□□□ -0.78
HDAC9-228ENST00000524023 GSDMCQ9BYG8 508 aa10.16□□□□□ -0.78
HDAC9-228ENST00000524023 RBCK1Q9BYM8 510 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms