RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 CAMK2AQ9UQM7 478 aa13.8□□□□□ -0.2
LSM1-203ENST00000520755 TMED7Q9Y3B3 224 aa13.8□□□□□ -0.2
LSM1-203ENST00000520755 ZNF337Q9Y3M9 751 aa13.8□□□□□ -0.2
LSM1-203ENST00000520755 FAM32AQ9Y421 112 aaKnown RBP13.8□□□□□ -0.2
LSM1-203ENST00000520755 NBASA2RRP1 2371 aa13.8□□□□□ -0.2
LSM1-203ENST00000520755 ARHGAP21Q5T5U3 1957 aa13.8□□□□□ -0.2
LSM1-203ENST00000520755 A0A087WUJ7 227 aa13.79□□□□□ -0.2
LSM1-203ENST00000520755 ZC3H12DA2A288 527 aaKnown RBP13.79□□□□□ -0.2
LSM1-203ENST00000520755 ADAMDEC1O15204 470 aa13.79□□□□□ -0.2
LSM1-203ENST00000520755 MGRN1O60291 552 aa13.79□□□□□ -0.2
LSM1-203ENST00000520755 PIP5K1CO60331 668 aa13.79□□□□□ -0.2
LSM1-203ENST00000520755 DEAF1O75398 565 aaPredicted RBP13.79□□□□□ -0.2
LSM1-203ENST00000520755 FCGR1AP12314 374 aa13.79□□□□□ -0.2
LSM1-203ENST00000520755 FASP25445 335 aa13.79□□□□□ -0.2
LSM1-203ENST00000520755 ELK4P28324 431 aa13.79□□□□□ -0.2
LSM1-203ENST00000520755 ADH6P28332 368 aa13.79□□□□□ -0.2
LSM1-203ENST00000520755 SRYQ05066 204 aa13.79□□□□□ -0.2
LSM1-203ENST00000520755 EGR4Q05215 589 aa13.79□□□□□ -0.2
LSM1-203ENST00000520755 ST3GAL3Q11203 375 aa13.79□□□□□ -0.2
LSM1-203ENST00000520755 FOXD4Q12950 439 aaPredicted RBP13.79□□□□□ -0.2
LSM1-203ENST00000520755 LAPTM4AQ15012 233 aa13.79□□□□□ -0.2
LSM1-203ENST00000520755 TRAM2Q15035 370 aa13.79□□□□□ -0.2
LSM1-203ENST00000520755 EXOC3L2Q2M3D2 409 aa13.79□□□□□ -0.2
LSM1-203ENST00000520755 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.79□□□□□ -0.2
LSM1-203ENST00000520755 GXYLT1Q4G148 440 aa13.79□□□□□ -0.2
LSM1-203ENST00000520755 ZNF585AQ6P3V2 769 aa13.79□□□□□ -0.2
LSM1-203ENST00000520755 C3P1Q6ZMU1 363 aa13.79□□□□□ -0.2
LSM1-203ENST00000520755 Q6ZPB1 254 aaPredicted RBP13.79□□□□□ -0.2
LSM1-203ENST00000520755 EPHX4Q8IUS5 362 aa13.79□□□□□ -0.2
LSM1-203ENST00000520755 UBQLNLQ8IYU4 475 aa13.79□□□□□ -0.2
LSM1-203ENST00000520755 PQLC1Q8N2U9 271 aa13.79□□□□□ -0.2
LSM1-203ENST00000520755 OR52J3Q8NH60 311 aa13.79□□□□□ -0.2
LSM1-203ENST00000520755 RELTQ969Z4 430 aa13.79□□□□□ -0.2
LSM1-203ENST00000520755 ANKRD19PQ9H560 264 aa13.79□□□□□ -0.2
LSM1-203ENST00000520755 TMEM185BQ9H7F4 350 aa13.79□□□□□ -0.2
LSM1-203ENST00000520755 NKX1-2Q9UD57 310 aaPredicted RBP13.79□□□□□ -0.2
LSM1-203ENST00000520755 PRDM4Q9UKN5 801 aa13.79□□□□□ -0.2
LSM1-203ENST00000520755 U3KQV3 271 aa13.79□□□□□ -0.2
LSM1-203ENST00000520755 A0A087WUU8 490 aa13.78□□□□□ -0.2
LSM1-203ENST00000520755 ELOA3DA6NLF2 546 aaPredicted RBP13.78□□□□□ -0.2
LSM1-203ENST00000520755 LINC01387J3KSC0 135 aa13.78□□□□□ -0.2
LSM1-203ENST00000520755 SEC14L5O43304 696 aa13.78□□□□□ -0.2
LSM1-203ENST00000520755 NPIPB7O75200 414 aa13.78□□□□□ -0.2
LSM1-203ENST00000520755 GADD45GO95257 159 aa13.78□□□□□ -0.2
LSM1-203ENST00000520755 LDLRP01130 860 aa13.78□□□□□ -0.2
LSM1-203ENST00000520755 OPN1LWP04000 364 aa13.78□□□□□ -0.2
LSM1-203ENST00000520755 PEPDP12955 493 aa13.78□□□□□ -0.2
LSM1-203ENST00000520755 ANPEPP15144 967 aa13.78□□□□□ -0.2
LSM1-203ENST00000520755 CCNA2P20248 432 aa13.78□□□□□ -0.2
LSM1-203ENST00000520755 HTR3AP46098 478 aa13.78□□□□□ -0.2
LSM1-203ENST00000520755 LHX2P50458 406 aa13.78□□□□□ -0.2
LSM1-203ENST00000520755 HMGA2P52926 109 aa13.78□□□□□ -0.2
LSM1-203ENST00000520755 SELENBP1Q13228 472 aa13.78□□□□□ -0.2
LSM1-203ENST00000520755 ELOA3BQ3SY89 546 aa13.78□□□□□ -0.2
LSM1-203ENST00000520755 EMC4Q5J8M3 183 aa13.78□□□□□ -0.2
LSM1-203ENST00000520755 FGD3Q5JSP0 725 aa13.78□□□□□ -0.2
LSM1-203ENST00000520755 PODNL1Q6PEZ8 512 aa13.78□□□□□ -0.2
LSM1-203ENST00000520755 DOLPP1Q86YN1 238 aa13.78□□□□□ -0.2
LSM1-203ENST00000520755 P3H2Q8IVL5 708 aa13.78□□□□□ -0.2
LSM1-203ENST00000520755 C10orf67Q8IYJ2 551 aa13.78□□□□□ -0.2
LSM1-203ENST00000520755 HS3ST5Q8IZT8 346 aa13.78□□□□□ -0.2
LSM1-203ENST00000520755 ATP6V1C2Q8NEY4 427 aa13.78□□□□□ -0.2
LSM1-203ENST00000520755 ELOA3Q8NG57 546 aa13.78□□□□□ -0.2
LSM1-203ENST00000520755 WDYHV1Q96HA8 205 aa13.78□□□□□ -0.2
LSM1-203ENST00000520755 MPP4Q96JB8 637 aa13.78□□□□□ -0.2
LSM1-203ENST00000520755 EPYCQ99645 322 aa13.78□□□□□ -0.2
LSM1-203ENST00000520755 OR11A1Q9GZK7 315 aa13.78□□□□□ -0.2
LSM1-203ENST00000520755 SEMA6AQ9H2E6 1030 aa13.78□□□□□ -0.2
LSM1-203ENST00000520755 REEP1Q9H902 201 aa13.78□□□□□ -0.2
LSM1-203ENST00000520755 MEPEQ9NQ76 525 aaPredicted RBP13.78□□□□□ -0.2
LSM1-203ENST00000520755 CHRNA9Q9UGM1 479 aa13.78□□□□□ -0.2
LSM1-203ENST00000520755 SAMHD1Q9Y3Z3 626 aaKnown RBP13.78□□□□□ -0.2
LSM1-203ENST00000520755 SH3PXD2BA1X283 911 aa13.77□□□□□ -0.21
LSM1-203ENST00000520755 TNFRSF11BO00300 401 aa13.77□□□□□ -0.21
LSM1-203ENST00000520755 STSP08842 583 aa13.77□□□□□ -0.21
LSM1-203ENST00000520755 PNMTP11086 282 aa13.77□□□□□ -0.21
LSM1-203ENST00000520755 ZNF708P17019 499 aa13.77□□□□□ -0.21
LSM1-203ENST00000520755 APOBEC1P41238 236 aaKnown RBP13.77□□□□□ -0.21
LSM1-203ENST00000520755 CA7P43166 264 aa13.77□□□□□ -0.21
LSM1-203ENST00000520755 CLDN18P56856 261 aa13.77□□□□□ -0.21
LSM1-203ENST00000520755 ZNF770Q6IQ21 691 aaPredicted RBP13.77□□□□□ -0.21
LSM1-203ENST00000520755 C3orf33Q6P1S2 294 aa13.77□□□□□ -0.21
LSM1-203ENST00000520755 TBPL2Q6SJ96 375 aa13.77□□□□□ -0.21
LSM1-203ENST00000520755 GGNQ86UU5 652 aa13.77□□□□□ -0.21
LSM1-203ENST00000520755 PM20D2Q8IYS1 436 aa13.77□□□□□ -0.21
LSM1-203ENST00000520755 PFN4Q8NHR9 129 aa13.77□□□□□ -0.21
LSM1-203ENST00000520755 RNF217Q8TC41 542 aa13.77□□□□□ -0.21
LSM1-203ENST00000520755 ACOT11Q8WXI4 607 aaPredicted RBP13.77□□□□□ -0.21
LSM1-203ENST00000520755 ALPK1Q96QP1 1244 aa13.77□□□□□ -0.21
LSM1-203ENST00000520755 PTDSS2Q9BVG9 487 aa13.77□□□□□ -0.21
LSM1-203ENST00000520755 PRDM14Q9GZV8 571 aa13.77□□□□□ -0.21
LSM1-203ENST00000520755 TP63Q9H3D4 680 aaPredicted RBP13.77□□□□□ -0.21
LSM1-203ENST00000520755 RNPEPL1Q9HAU8 725 aa13.77□□□□□ -0.21
LSM1-203ENST00000520755 MAGED1Q9Y5V3 778 aaPredicted RBP13.77□□□□□ -0.21
LSM1-203ENST00000520755 AP4B1Q9Y6B7 739 aa13.77□□□□□ -0.21
LSM1-203ENST00000520755 RELNP78509 3460 aa13.77□□□□□ -0.21
LSM1-203ENST00000520755 PHF3Q92576 2039 aaKnown RBP13.76□□□□□ -0.21
LSM1-203ENST00000520755 FIGNL2A6NMB9 653 aa13.76□□□□□ -0.21
LSM1-203ENST00000520755 H0YC42 278 aa13.76□□□□□ -0.21
LSM1-203ENST00000520755 CCL21O00585 134 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms