RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 TREM1Q9NP99 234 aa10.87□□□□□ -0.67
SYNPO-204ENST00000519664 A4GALTQ9NPC4 353 aa10.87□□□□□ -0.67
SYNPO-204ENST00000519664 ZNF226Q9NYT6 803 aa10.87□□□□□ -0.67
SYNPO-204ENST00000519664 FTSJ1Q9UET6 329 aa10.87□□□□□ -0.67
SYNPO-204ENST00000519664 OSGIN1Q9UJX0 560 aa10.87□□□□□ -0.67
SYNPO-204ENST00000519664 RCE1Q9Y256 329 aa10.87□□□□□ -0.67
SYNPO-204ENST00000519664 AP1M2Q9Y6Q5 423 aa10.87□□□□□ -0.67
SYNPO-204ENST00000519664 MYOFQ9NZM1 2061 aa10.87□□□□□ -0.67
SYNPO-204ENST00000519664 COL11A2P13942 1736 aaPredicted RBP10.87□□□□□ -0.67
SYNPO-204ENST00000519664 C2orf72A6NCS6 295 aa10.87□□□□□ -0.67
SYNPO-204ENST00000519664 TRIM64A6NGJ6 449 aa10.87□□□□□ -0.67
SYNPO-204ENST00000519664 TRIM64BA6NI03 449 aa10.87□□□□□ -0.67
SYNPO-204ENST00000519664 FOXK2Q01167 660 aa10.87□□□□□ -0.67
SYNPO-204ENST00000519664 TCTE1Q5JU00 501 aa10.87□□□□□ -0.67
SYNPO-204ENST00000519664 DPY19L4Q7Z388 723 aa10.87□□□□□ -0.67
SYNPO-204ENST00000519664 SFTPA1Q8IWL2 248 aa10.87□□□□□ -0.67
SYNPO-204ENST00000519664 FAM160A2Q8N612 972 aaPredicted RBP10.87□□□□□ -0.67
SYNPO-204ENST00000519664 BOLLQ8N9W6 283 aaKnown RBP10.87□□□□□ -0.67
SYNPO-204ENST00000519664 SFXN5Q8TD22 340 aa10.87□□□□□ -0.67
SYNPO-204ENST00000519664 SLC37A2Q8TED4 501 aa10.87□□□□□ -0.67
SYNPO-204ENST00000519664 FAM71F1Q96KD3 344 aaPredicted RBP10.87□□□□□ -0.67
SYNPO-204ENST00000519664 COQ10AQ96MF6 247 aa10.87□□□□□ -0.67
SYNPO-204ENST00000519664 PITHD1Q9GZP4 211 aaPredicted RBP10.87□□□□□ -0.67
SYNPO-204ENST00000519664 ZNF350Q9GZX5 532 aa10.87□□□□□ -0.67
SYNPO-204ENST00000519664 PRDM9Q9NQV7 894 aa10.87□□□□□ -0.67
SYNPO-204ENST00000519664 PARPBPQ9NWS1 579 aa10.87□□□□□ -0.67
SYNPO-204ENST00000519664 CACNA1GO43497 2377 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 KIR2DS5A0A0G2JLQ3 304 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 A0A0G2JNG1 304 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 CDHR4A6H8M9 788 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 KIR2DS3K7RE56 304 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 NPC1O15118 1278 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 ZNF208O43345 1280 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 C1QCP02747 245 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 RLN2P04090 185 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 EIF2DP41214 584 aaKnown RBP10.86□□□□□ -0.67
SYNPO-204ENST00000519664 PRPS1P60891 318 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 KIR2DS5Q14953 304 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 CLVS2Q5SYC1 327 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 EEF1A1P5Q5VTE0 462 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 PRAMEF8Q5VWM4 474 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 PRAMEF7Q5VXH5 474 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 LAS2Q8IYD9 372 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 ARL14Q8N4G2 192 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 DYNC2LI1Q8TCX1 351 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 RSC1A1Q92681 617 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 HAVCR1Q96D42 359 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 ELMOD3Q96FG2 381 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 SLC35A4Q96G79 324 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 SHDQ96IW2 340 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 NEDD4LQ96PU5 975 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 HDAC8Q9BY41 377 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 POTEKPQ9BYX7 375 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.86□□□□□ -0.67
SYNPO-204ENST00000519664 LRIT1Q9P2V4 623 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 HOXC11O43248 304 aaPredicted RBP10.86□□□□□ -0.67
SYNPO-204ENST00000519664 EGFP01133 1207 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 GABRA5P31644 462 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 CTHP32929 405 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 RPS27P42677 84 aaKnown RBP10.86□□□□□ -0.67
SYNPO-204ENST00000519664 POU3F4P49335 361 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 LIM2P55344 173 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 CDC20Q12834 499 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 SNTA1Q13424 505 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 RNASE10Q5GAN6 216 aaKnown RBP10.86□□□□□ -0.67
SYNPO-204ENST00000519664 NKAIN2Q5VXU1 208 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 SLC18B1Q6NT16 456 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 OR7G2Q8NG99 324 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 OR2A1Q8NGT9 310 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 CNRIP1Q96F85 164 aaPredicted RBP10.86□□□□□ -0.67
SYNPO-204ENST00000519664 HINT3Q9NQE9 182 aaKnown RBP10.86□□□□□ -0.67
SYNPO-204ENST00000519664 SCML1Q9UN30 329 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 LGI1O95970 557 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 BSGP35613 385 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 TMEM52BQ4KMG9 183 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 CFAP77Q6ZQR2 320 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 MBOAT2Q6ZWT7 520 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 SYNPRQ8TBG9 265 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 ZG16BQ96DA0 208 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 OR14A2Q96R54 314 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 PBX4Q9BYU1 374 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 OR51J1Q9H342 316 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 PIGUQ9H490 435 aa10.86□□□□□ -0.67
SYNPO-204ENST00000519664 DIMT1Q9UNQ2 313 aaKnown RBP10.86□□□□□ -0.67
SYNPO-204ENST00000519664 FZD7O75084 574 aa10.85□□□□□ -0.67
SYNPO-204ENST00000519664 S100GP29377 79 aa10.85□□□□□ -0.67
SYNPO-204ENST00000519664 PRSS3P35030 304 aa10.85□□□□□ -0.67
SYNPO-204ENST00000519664 DDOSTP39656 456 aa10.85□□□□□ -0.67
SYNPO-204ENST00000519664 RBM34P42696 430 aaKnown RBP10.85□□□□□ -0.67
SYNPO-204ENST00000519664 WNT3P56703 355 aa10.85□□□□□ -0.67
SYNPO-204ENST00000519664 PPP2CBP62714 309 aa10.85□□□□□ -0.67
SYNPO-204ENST00000519664 PPP2CAP67775 309 aa10.85□□□□□ -0.67
SYNPO-204ENST00000519664 BTN1A1Q13410 526 aa10.85□□□□□ -0.67
SYNPO-204ENST00000519664 SERTAD2Q14140 314 aa10.85□□□□□ -0.67
SYNPO-204ENST00000519664 SF3A2Q15428 464 aaKnown RBP10.85□□□□□ -0.67
SYNPO-204ENST00000519664 OR7A5Q15622 319 aa10.85□□□□□ -0.67
SYNPO-204ENST00000519664 XAF1Q6GPH4 301 aa10.85□□□□□ -0.67
SYNPO-204ENST00000519664 BBS1Q8NFJ9 593 aa10.85□□□□□ -0.67
SYNPO-204ENST00000519664 GPR148Q8TDV2 347 aa10.85□□□□□ -0.67
SYNPO-204ENST00000519664 KLHL15Q96M94 604 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms