RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 TECPR2O15040 1411 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 ALPIP09923 528 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 CBR1P16152 277 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 PER3P56645 1201 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 CXCL9Q07325 125 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 TMEM115Q12893 351 aaPredicted RBP10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 TIGITQ495A1 244 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 VASNQ6EMK4 673 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 MRPL21Q7Z2W9 205 aaKnown RBP10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 ABHD12BQ7Z5M8 362 aaPredicted RBP10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 FJX1Q86VR8 437 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 ZC3H3Q8IXZ2 948 aaKnown RBP10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 VGLL2Q8N8G2 317 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 CMTM2Q8TAZ6 248 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 HRASLS5Q96KN8 279 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 C4orf36Q96KX1 117 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 DDX31Q9H8H2 851 aaKnown RBP10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 PLEK2Q9NYT0 353 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 GPR52Q9Y2T5 361 aa10.53□□□□□ -0.72
LIMCH1-217ENST00000512946 BLACEA4D250 179 aa10.52□□□□□ -0.72
LIMCH1-217ENST00000512946 RAD1O60671 282 aa10.52□□□□□ -0.72
LIMCH1-217ENST00000512946 GALTP07902 379 aa10.52□□□□□ -0.72
LIMCH1-217ENST00000512946 ITGB8P26012 769 aa10.52□□□□□ -0.72
LIMCH1-217ENST00000512946 UBE2NP61088 152 aaKnown RBP10.52□□□□□ -0.72
LIMCH1-217ENST00000512946 RING1Q06587 406 aa10.52□□□□□ -0.72
LIMCH1-217ENST00000512946 SLC9A3R2Q15599 337 aa10.52□□□□□ -0.72
LIMCH1-217ENST00000512946 OTUD1Q5VV17 481 aaPredicted RBP10.52□□□□□ -0.72
LIMCH1-217ENST00000512946 SYPL2Q5VXT5 272 aa10.52□□□□□ -0.72
LIMCH1-217ENST00000512946 ZNF776Q68DI1 518 aaPredicted RBP10.52□□□□□ -0.72
LIMCH1-217ENST00000512946 KIAA0895LQ68EN5 471 aa10.52□□□□□ -0.72
LIMCH1-217ENST00000512946 OR52W1Q6IF63 320 aa10.52□□□□□ -0.72
LIMCH1-217ENST00000512946 ZNF680Q8NEM1 530 aa10.52□□□□□ -0.72
LIMCH1-217ENST00000512946 CDH20Q9HBT6 801 aa10.52□□□□□ -0.72
LIMCH1-217ENST00000512946 SPACA1Q9HBV2 294 aa10.52□□□□□ -0.72
LIMCH1-217ENST00000512946 ELOA3CA0A087WX78 387 aaPredicted RBP10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 ZNF724A8MTY0 619 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 TBPP20226 339 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 CBLP22681 906 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 ACRV1P26436 265 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 HBA1P69905 142 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 ZNF90Q03938 601 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 Q499Y3 187 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 ETFRF1Q6IPR1 90 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 NLRC3Q7RTR2 1065 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 ZNF100Q8IYN0 542 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 ARL14EPQ8N8R7 260 aaPredicted RBP10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 OR9Q2Q8NGE9 314 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 GPR152Q8TDT2 470 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 LMX1AQ8TE12 382 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 APH1AQ96BI3 265 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 DPH2Q9BQC3 489 aaPredicted RBP10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 HCAR1Q9BXC0 346 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 SPNS1Q9H2V7 528 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 ZNF337Q9Y3M9 751 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 CFAP65Q6ZU64 1925 aaKnown RBP10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 FAM221BA6H8Z2 402 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 TMEM235A6NFC5 223 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 SELPP16109 830 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 FUT1P19526 365 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 NRLP54845 237 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 BIDP55957 195 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 ADPRMQ3LIE5 342 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 ARSIQ5FYB1 569 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 OR2T2Q6IF00 324 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 C22orf39Q6P5X5 142 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 SIAH3Q8IW03 269 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 CLDN19Q8N6F1 224 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 CELF2-AS1Q8N7Q2 184 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 ZNF610Q8N9Z0 462 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 OR6M1Q8NGM8 313 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 OR2G3Q8NGZ4 309 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 SEH1LQ96EE3 360 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 DUS3LQ96G46 650 aaKnown RBP10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 GJD4Q96KN9 370 aaPredicted RBP10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 GALNT9Q9HCQ5 603 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 TM7SF3Q9NS93 570 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 ZNF728P0DKX0 622 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 HTR2CP28335 458 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 BAXQ07812 192 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 PLGLAQ15195 96 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 ZMYND19Q96E35 227 aaPredicted RBP10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 SLC41A2Q96JW4 573 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 INPP5KQ9BT40 448 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 DEFB126Q9BYW3 111 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 LMAN1LQ9HAT1 526 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 RAB22AQ9UL26 194 aa10.52□□□□□ -0.73
LIMCH1-217ENST00000512946 CALCBP10092 127 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 HNF1BP35680 557 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 ZNF133P52736 654 aaPredicted RBP10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 AANATQ16613 207 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 OR6S1Q8NH40 331 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 OR5B3Q8NH48 314 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 SENP5Q96HI0 755 aaPredicted RBP10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 ALG12Q9BV10 488 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 IGFLR1Q9H665 355 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 MED9Q9NWA0 146 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 TEX50A0A1B0GTY4 177 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 G3V2L1 256 aa10.51□□□□□ -0.73
LIMCH1-217ENST00000512946 KCNQ2O43526 872 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms