RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 KCNE3Q9Y6H6 103 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 HEATR5BQ9P2D3 2071 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 OR14I1A6ND48 311 aa6.71□□□□□ -1.33
LIMCH1-207ENST00000508466 A8MVJ9 347 aa6.71□□□□□ -1.33
LIMCH1-207ENST00000508466 PRAMEF11O60813 436 aa6.71□□□□□ -1.33
LIMCH1-207ENST00000508466 FGF19O95750 216 aa6.71□□□□□ -1.33
LIMCH1-207ENST00000508466 ITGA3P26006 1051 aa6.71□□□□□ -1.33
LIMCH1-207ENST00000508466 MAT2AP31153 395 aaKnown RBP6.71□□□□□ -1.33
LIMCH1-207ENST00000508466 TAS2R41P59536 307 aa6.71□□□□□ -1.33
LIMCH1-207ENST00000508466 GMFBP60983 142 aa6.71□□□□□ -1.33
LIMCH1-207ENST00000508466 IKZF1Q13422 519 aa6.71□□□□□ -1.33
LIMCH1-207ENST00000508466 TMEM69Q5SWH9 247 aa6.71□□□□□ -1.33
LIMCH1-207ENST00000508466 SLC22A10Q63ZE4 541 aa6.71□□□□□ -1.33
LIMCH1-207ENST00000508466 OLFML2AQ68BL7 652 aa6.71□□□□□ -1.33
LIMCH1-207ENST00000508466 TIPARPQ7Z3E1 657 aaKnown RBP6.71□□□□□ -1.33
LIMCH1-207ENST00000508466 COMMD6Q7Z4G1 85 aa6.71□□□□□ -1.33
LIMCH1-207ENST00000508466 MISPQ8IVT2 679 aa6.71□□□□□ -1.33
LIMCH1-207ENST00000508466 NRMQ8IXM6 262 aa6.71□□□□□ -1.33
LIMCH1-207ENST00000508466 OR9A2Q8NGT5 310 aa6.71□□□□□ -1.33
LIMCH1-207ENST00000508466 SYNPRQ8TBG9 265 aa6.71□□□□□ -1.33
LIMCH1-207ENST00000508466 CSGALNACT1Q8TDX6 532 aa6.71□□□□□ -1.33
LIMCH1-207ENST00000508466 SECTM1Q8WVN6 248 aa6.71□□□□□ -1.33
LIMCH1-207ENST00000508466 SCAMP4Q969E2 229 aa6.71□□□□□ -1.33
LIMCH1-207ENST00000508466 HIST1H2BAQ96A08 127 aa6.71□□□□□ -1.33
LIMCH1-207ENST00000508466 GAL3ST3Q96A11 431 aa6.71□□□□□ -1.33
LIMCH1-207ENST00000508466 RGMAQ96B86 450 aa6.71□□□□□ -1.33
LIMCH1-207ENST00000508466 TIMP4Q99727 224 aa6.71□□□□□ -1.33
LIMCH1-207ENST00000508466 FAM117AQ9C073 453 aa6.71□□□□□ -1.33
LIMCH1-207ENST00000508466 NRSN2Q9GZP1 204 aa6.71□□□□□ -1.33
LIMCH1-207ENST00000508466 CRLF2Q9HC73 371 aa6.71□□□□□ -1.33
LIMCH1-207ENST00000508466 PTTG3PQ9NZH4 202 aa6.71□□□□□ -1.33
LIMCH1-207ENST00000508466 SLC23A2Q9UGH3 650 aa6.71□□□□□ -1.33
LIMCH1-207ENST00000508466 PRG3Q9Y2Y8 225 aaPredicted RBP6.71□□□□□ -1.33
LIMCH1-207ENST00000508466 KCNE1BA0A087WTH5 132 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 TBC1D3DA0A087WVF3 549 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 TBC1D3IA0A087WXS9 549 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 A0A087X0M5 115 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 TBC1D3EA0A087X179 549 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 TBC1D3KA0A087X1G2 549 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 A0A1B0GX30 115 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 CDHR4A6H8M9 788 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 TBC1D3BA6NDS4 549 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 TBC1D3FA6NER0 549 aaPredicted RBP6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 OR5H14A6NHG9 310 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 TBC1D3LB9A6J9 549 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 CDC42EP2O14613 210 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 PHOX2AO14813 284 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 SMAD6O43541 496 aaKnown RBP6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 GPR37L1O60883 481 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 MAS1P04201 325 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 TBC1D3HP0C7X1 549 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 HOXB8P17481 243 aaPredicted RBP6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 RAB6AP20340 208 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 CDK2P24941 298 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 DLSTP36957 453 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 RPS27P42677 84 aaKnown RBP6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 TSFMP43897 325 aaKnown RBP6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 PRKXP51817 358 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 DLX5P56178 289 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 PFN3P60673 137 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 CAP1Q01518 475 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 NFATC2Q13469 925 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 ACTBL2Q562R1 376 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 RNF219Q5W0B1 726 aaPredicted RBP6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 ZNF626Q68DY1 528 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 TBC1D3GQ6DHY5 549 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 TBC1D3CQ6IPX1 549 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 TBC1D3Q8IZP1 549 aaPredicted RBP6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 TOP6BLQ8N6T0 577 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 ZNF248Q8NDW4 579 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 FCAMRQ8WWV6 532 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 ZMYND19Q96E35 227 aaPredicted RBP6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 FUBP3Q96I24 572 aaKnown RBP eCLIP6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 CYYR1Q96J86 154 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 TEFMQ96QE5 360 aaKnown RBP6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 ZNF649Q9BS31 505 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 TOLLIPQ9H0E2 274 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 FN3KQ9H479 309 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 ACKR4Q9NPB9 350 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 MAN2C1Q9NTJ4 1040 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 UQCC1Q9NVA1 299 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 IL17CQ9P0M4 197 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 CHRNA9Q9UGM1 479 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 PLAGL1Q9UM63 463 aa6.71□□□□□ -1.34
LIMCH1-207ENST00000508466 ZNF727A8MUV8 499 aa6.7□□□□□ -1.34
LIMCH1-207ENST00000508466 CD3DP04234 171 aa6.7□□□□□ -1.34
LIMCH1-207ENST00000508466 RB1P06400 928 aa6.7□□□□□ -1.34
LIMCH1-207ENST00000508466 CKMP06732 381 aa6.7□□□□□ -1.34
LIMCH1-207ENST00000508466 H2AFB1P0C5Y9 115 aa6.7□□□□□ -1.34
LIMCH1-207ENST00000508466 JMJD7P0C870 316 aa6.7□□□□□ -1.34
LIMCH1-207ENST00000508466 RPL17P18621 184 aaKnown RBP6.7□□□□□ -1.34
LIMCH1-207ENST00000508466 HOXD9P28356 352 aaPredicted RBP6.7□□□□□ -1.34
LIMCH1-207ENST00000508466 EIF2S3P41091 472 aaKnown RBP6.7□□□□□ -1.34
LIMCH1-207ENST00000508466 ACTR1BP42025 376 aa6.7□□□□□ -1.34
LIMCH1-207ENST00000508466 RPS10P46783 165 aaKnown RBP6.7□□□□□ -1.34
LIMCH1-207ENST00000508466 MTNR1BP49286 362 aa6.7□□□□□ -1.34
LIMCH1-207ENST00000508466 MMP15P51511 669 aa6.7□□□□□ -1.34
LIMCH1-207ENST00000508466 PNLIPRP1P54315 467 aa6.7□□□□□ -1.34
LIMCH1-207ENST00000508466 GPNMBQ14956 572 aa6.7□□□□□ -1.34
LIMCH1-207ENST00000508466 TSC22D1Q15714 1073 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms