RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 SLC30A3Q99726 388 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 NT5DC2Q9H857 520 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 NOSIPQ9Y314 301 aaKnown RBP12.25□□□□□ -0.45
PTPRF-215ENST00000496447 C4AP0C0L4 1744 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 COL16A1Q07092 1604 aaPredicted RBP12.24□□□□□ -0.45
PTPRF-215ENST00000496447 LCMT2O60294 686 aaKnown RBP12.24□□□□□ -0.45
PTPRF-215ENST00000496447 RPS2P15880 293 aaKnown RBP12.24□□□□□ -0.45
PTPRF-215ENST00000496447 KEAP1Q14145 624 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 SLC5A12Q1EHB4 618 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 ZNF695Q8IW36 515 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 MKXQ8IYA7 352 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 LILRB2Q8N423 598 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 TMEM174Q8WUU8 243 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 PIGCQ92535 297 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 ZNF587Q96SQ5 575 aaPredicted RBP12.24□□□□□ -0.45
PTPRF-215ENST00000496447 SLC25A18Q9H1K4 315 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 DDX31Q9H8H2 851 aaKnown RBP12.24□□□□□ -0.45
PTPRF-215ENST00000496447 SIAEQ9HAT2 523 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 MMP17Q9ULZ9 603 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 TMEM184BQ9Y519 407 aaPredicted RBP12.24□□□□□ -0.45
PTPRF-215ENST00000496447 FAM155AB1AL88 458 aaPredicted RBP12.24□□□□□ -0.45
PTPRF-215ENST00000496447 H0YIV9 168 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 DNAJB6O75190 326 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 GABRA2P47869 451 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 CLDN17P56750 224 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 FAM83HQ6ZRV2 1179 aaPredicted RBP12.24□□□□□ -0.45
PTPRF-215ENST00000496447 CREB3L2Q70SY1 520 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 PGAP1Q75T13 922 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 BEST4Q8NFU0 473 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 OR14K1Q8NGZ2 314 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 MICU1Q9BPX6 476 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 NUPL2O15504 423 aaKnown RBP12.24□□□□□ -0.45
PTPRF-215ENST00000496447 HTR5AP47898 357 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 ALDH3B2P48448 385 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 RAB5CP51148 216 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 ATP1B3P54709 279 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 KIAA1024LP59773 190 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 PCGF3Q3KNV8 242 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 ZNF322Q6U7Q0 402 aaPredicted RBP12.24□□□□□ -0.45
PTPRF-215ENST00000496447 PARP16Q8N5Y8 322 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 UCN3Q969E3 161 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 C6orf106Q9H6K1 298 aaPredicted RBP12.24□□□□□ -0.45
PTPRF-215ENST00000496447 EMCNQ9ULC0 261 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 TIMM8BQ9Y5J9 83 aaPredicted RBP12.24□□□□□ -0.45
PTPRF-215ENST00000496447 SDK1Q7Z5N4 2213 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 TMEM269A0A1B0GVZ9 245 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 PRAF2O60831 178 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 SIRPAP78324 504 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 AADACL4Q5VUY2 407 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 NIPAL3Q6P499 406 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 ELMOD3Q96FG2 381 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 PDXPQ96GD0 296 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 HHLA2Q9UM44 414 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 MMACHCQ9Y4U1 282 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 PRSS44E7EML9 344 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 KLRC4-KLRK1H3BQV0 150 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 HCRTR1O43613 425 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 F13BP05160 661 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 DPP4P27487 766 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 ADH6P28332 368 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 FAM111BQ6SJ93 734 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 ESX1Q8N693 406 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 ZNF845Q96IR2 970 aaPredicted RBP12.24□□□□□ -0.45
PTPRF-215ENST00000496447 LCORQ96JN0 433 aaPredicted RBP12.24□□□□□ -0.45
PTPRF-215ENST00000496447 C7orf50Q9BRJ6 194 aaKnown RBP12.24□□□□□ -0.45
PTPRF-215ENST00000496447 TM7SF3Q9NS93 570 aa12.24□□□□□ -0.45
PTPRF-215ENST00000496447 MYH8P13535 1937 aa12.23□□□□□ -0.45
PTPRF-215ENST00000496447 SNAPINO95295 136 aa12.23□□□□□ -0.45
PTPRF-215ENST00000496447 SERPINE2P07093 398 aa12.23□□□□□ -0.45
PTPRF-215ENST00000496447 GPR157Q5UAW9 335 aa12.23□□□□□ -0.45
PTPRF-215ENST00000496447 SLC6A19Q695T7 634 aa12.23□□□□□ -0.45
PTPRF-215ENST00000496447 DPY19L4Q7Z388 723 aa12.23□□□□□ -0.45
PTPRF-215ENST00000496447 LACC1Q8IV20 430 aa12.23□□□□□ -0.45
PTPRF-215ENST00000496447 ZNF566Q969W8 418 aa12.23□□□□□ -0.45
PTPRF-215ENST00000496447 AGPAT4Q9NRZ5 378 aa12.23□□□□□ -0.45
PTPRF-215ENST00000496447 TEX10Q9NXF1 929 aaPredicted RBP12.23□□□□□ -0.45
PTPRF-215ENST00000496447 MYH7BA7E2Y1 1941 aa12.23□□□□□ -0.45
PTPRF-215ENST00000496447 CITO14578 2027 aa12.23□□□□□ -0.45
PTPRF-215ENST00000496447 TRAPPC2LH3BP13 241 aa12.23□□□□□ -0.45
PTPRF-215ENST00000496447 ZNF749O43361 778 aa12.23□□□□□ -0.45
PTPRF-215ENST00000496447 OIP5O43482 229 aa12.23□□□□□ -0.45
PTPRF-215ENST00000496447 ARSBP15848 533 aa12.23□□□□□ -0.45
PTPRF-215ENST00000496447 TACR3P29371 465 aa12.23□□□□□ -0.45
PTPRF-215ENST00000496447 ADPRHP54922 357 aa12.23□□□□□ -0.45
PTPRF-215ENST00000496447 SLC35A1P78382 337 aa12.23□□□□□ -0.45
PTPRF-215ENST00000496447 CDK5R2Q13319 367 aa12.23□□□□□ -0.45
PTPRF-215ENST00000496447 PGGHGQ32M88 737 aa12.23□□□□□ -0.45
PTPRF-215ENST00000496447 ELP2Q6IA86 826 aa12.23□□□□□ -0.45
PTPRF-215ENST00000496447 FAM160A2Q8N612 972 aaPredicted RBP12.23□□□□□ -0.45
PTPRF-215ENST00000496447 WFDC5Q8TCV5 224 aa12.23□□□□□ -0.45
PTPRF-215ENST00000496447 ZNF578Q96N58 590 aaPredicted RBP12.23□□□□□ -0.45
PTPRF-215ENST00000496447 DHRS4Q9BTZ2 278 aa12.23□□□□□ -0.45
PTPRF-215ENST00000496447 EPHX3Q9H6B9 360 aa12.23□□□□□ -0.45
PTPRF-215ENST00000496447 NIPAL2Q9H841 368 aa12.23□□□□□ -0.45
PTPRF-215ENST00000496447 GORASP2Q9H8Y8 452 aa12.23□□□□□ -0.45
PTPRF-215ENST00000496447 MRPS2Q9Y399 296 aaKnown RBP12.23□□□□□ -0.45
PTPRF-215ENST00000496447 GPLD1P80108 840 aa12.23□□□□□ -0.45
PTPRF-215ENST00000496447 RAB40BQ12829 278 aa12.23□□□□□ -0.45
PTPRF-215ENST00000496447 BCL7AQ4VC05 210 aa12.23□□□□□ -0.45
PTPRF-215ENST00000496447 SLCO4C1Q6ZQN7 724 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms