RNA–Protein interactions for RNA: ENST00000496375.1

CXCL12-208, Transcript of C-X-C motif chemokine ligand 12, human

TSL 5

Gene CXCL12, Length 803 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CXCL12-208	ENST00000496375	KAT8	Q9H7Z6	458 aa	Known RBP	12.81	□□□□□ -0.36
CXCL12-208	ENST00000496375	EXOSC3	Q9NQT5	275 aa	Known RBP	12.81	□□□□□ -0.36
CXCL12-208	ENST00000496375	NIPSNAP3A	Q9UFN0	247 aa	Predicted RBP	12.81	□□□□□ -0.36
CXCL12-208	ENST00000496375	PRDM4	Q9UKN5	801 aa		12.81	□□□□□ -0.36
CXCL12-208	ENST00000496375	SLC35A3	Q9Y2D2	325 aa		12.81	□□□□□ -0.36
CXCL12-208	ENST00000496375	CARD8	Q9Y2G2	431 aa		12.81	□□□□□ -0.36
CXCL12-208	ENST00000496375	GPR52	Q9Y2T5	361 aa		12.81	□□□□□ -0.36
CXCL12-208	ENST00000496375		A0A0G2JPF8	293 aa		12.8	□□□□□ -0.36
CXCL12-208	ENST00000496375	HNRNPCL2	B2RXH8	293 aa		12.8	□□□□□ -0.36
CXCL12-208	ENST00000496375	HNRNPCL3	B7ZW38	293 aa		12.8	□□□□□ -0.36
CXCL12-208	ENST00000496375	MRAS	O14807	208 aa		12.8	□□□□□ -0.36
CXCL12-208	ENST00000496375	ZNF264	O43296	627 aa		12.8	□□□□□ -0.36
CXCL12-208	ENST00000496375	EFNA2	O43921	213 aa		12.8	□□□□□ -0.36
CXCL12-208	ENST00000496375	HNRNPCL1	O60812	293 aa	Known RBP	12.8	□□□□□ -0.36
CXCL12-208	ENST00000496375	BCHE	P06276	602 aa		12.8	□□□□□ -0.36
CXCL12-208	ENST00000496375	THBS1	P07996	1170 aa		12.8	□□□□□ -0.36
CXCL12-208	ENST00000496375	PABPC4L	P0CB38	370 aa	Known RBP	12.8	□□□□□ -0.36
CXCL12-208	ENST00000496375	HNRNPCL4	P0DMR1	293 aa		12.8	□□□□□ -0.36
CXCL12-208	ENST00000496375	UBL4A	P11441	157 aa		12.8	□□□□□ -0.36
CXCL12-208	ENST00000496375	COX4I1	P13073	169 aa		12.8	□□□□□ -0.36
CXCL12-208	ENST00000496375	PSMB1	P20618	241 aa	Known RBP	12.8	□□□□□ -0.36
CXCL12-208	ENST00000496375	ELK4	P28324	431 aa		12.8	□□□□□ -0.36
CXCL12-208	ENST00000496375	PGM1	P36871	562 aa		12.8	□□□□□ -0.36
CXCL12-208	ENST00000496375	P2RX1	P51575	399 aa		12.8	□□□□□ -0.36
CXCL12-208	ENST00000496375	RBBP4	Q09028	425 aa		12.8	□□□□□ -0.36
CXCL12-208	ENST00000496375	SLC25A53	Q5H9E4	307 aa		12.8	□□□□□ -0.36
CXCL12-208	ENST00000496375	C8orf82	Q6P1X6	216 aa	Predicted RBP	12.8	□□□□□ -0.36
CXCL12-208	ENST00000496375	EIF3M	Q7L2H7	374 aa	Known RBP	12.8	□□□□□ -0.36
CXCL12-208	ENST00000496375	SERPINA11	Q86U17	422 aa		12.8	□□□□□ -0.36
CXCL12-208	ENST00000496375	PCYOX1L	Q8NBM8	494 aa		12.8	□□□□□ -0.36
CXCL12-208	ENST00000496375	FBXO27	Q8NI29	283 aa		12.8	□□□□□ -0.36
CXCL12-208	ENST00000496375	ABHD3	Q8WU67	409 aa		12.8	□□□□□ -0.36
CXCL12-208	ENST00000496375	TMEM171	Q8WVE6	324 aa		12.8	□□□□□ -0.36
CXCL12-208	ENST00000496375	IGFBPL1	Q8WX77	278 aa		12.8	□□□□□ -0.36
CXCL12-208	ENST00000496375	CPNE4	Q96A23	557 aa	Predicted RBP	12.8	□□□□□ -0.36
CXCL12-208	ENST00000496375	LRRC58	Q96CX6	371 aa		12.8	□□□□□ -0.36
CXCL12-208	ENST00000496375	ZG16B	Q96DA0	208 aa		12.8	□□□□□ -0.36
CXCL12-208	ENST00000496375	REXO5	Q96IC2	774 aa	Known RBP	12.8	□□□□□ -0.36
CXCL12-208	ENST00000496375	CCT8L2	Q96SF2	557 aa		12.8	□□□□□ -0.36
CXCL12-208	ENST00000496375	SPATA9	Q9BWV2	254 aa		12.8	□□□□□ -0.36
CXCL12-208	ENST00000496375	LAT2	Q9GZY6	243 aa		12.8	□□□□□ -0.36
CXCL12-208	ENST00000496375	OR10A4	Q9H209	315 aa		12.8	□□□□□ -0.36
CXCL12-208	ENST00000496375	TIGAR	Q9NQ88	270 aa		12.8	□□□□□ -0.36
CXCL12-208	ENST00000496375	USF3	Q68DE3	2245 aa		12.8	□□□□□ -0.36
CXCL12-208	ENST00000496375	TLN2	Q9Y4G6	2542 aa		12.8	□□□□□ -0.36
CXCL12-208	ENST00000496375	FREM1	Q5H8C1	2179 aa		12.79	□□□□□ -0.36
CXCL12-208	ENST00000496375	TMEM247	A6NEH6	219 aa		12.79	□□□□□ -0.36
CXCL12-208	ENST00000496375	GTPBP1	O00178	669 aa	Known RBP	12.79	□□□□□ -0.36
CXCL12-208	ENST00000496375	NTN1	O95631	604 aa		12.79	□□□□□ -0.36
CXCL12-208	ENST00000496375	DBI	P07108	87 aa	Known RBP	12.79	□□□□□ -0.36
CXCL12-208	ENST00000496375	NID1	P14543	1247 aa		12.79	□□□□□ -0.36
CXCL12-208	ENST00000496375	ETS2	P15036	469 aa		12.79	□□□□□ -0.36
CXCL12-208	ENST00000496375	ADH6	P28332	368 aa		12.79	□□□□□ -0.36
CXCL12-208	ENST00000496375	GZMM	P51124	257 aa		12.79	□□□□□ -0.36
CXCL12-208	ENST00000496375	SELPLG	Q14242	412 aa		12.79	□□□□□ -0.36
CXCL12-208	ENST00000496375	RNPS1	Q15287	305 aa	Known RBP	12.79	□□□□□ -0.36
CXCL12-208	ENST00000496375	TOMM34	Q15785	309 aa	Predicted RBP	12.79	□□□□□ -0.36
CXCL12-208	ENST00000496375	ZSWIM7	Q19AV6	140 aa		12.79	□□□□□ -0.36
CXCL12-208	ENST00000496375	NDUFAF6	Q330K2	333 aa		12.79	□□□□□ -0.36
CXCL12-208	ENST00000496375	TMEM176B	Q3YBM2	270 aa	Predicted RBP	12.79	□□□□□ -0.36
CXCL12-208	ENST00000496375	TMEM201	Q5SNT2	666 aa		12.79	□□□□□ -0.36
CXCL12-208	ENST00000496375	GCNT6	Q5T4J0	391 aa		12.79	□□□□□ -0.36
CXCL12-208	ENST00000496375	RNF220	Q5VTB9	566 aa		12.79	□□□□□ -0.36
CXCL12-208	ENST00000496375	ALKBH2	Q6NS38	261 aa		12.79	□□□□□ -0.36
CXCL12-208	ENST00000496375	NANOGP8	Q6NSW7	305 aa		12.79	□□□□□ -0.36
CXCL12-208	ENST00000496375	TFAP2E	Q6VUC0	442 aa		12.79	□□□□□ -0.36
CXCL12-208	ENST00000496375	HACD2	Q6Y1H2	254 aa		12.79	□□□□□ -0.36
CXCL12-208	ENST00000496375	NUFIP2	Q7Z417	695 aa	Known RBP	12.79	□□□□□ -0.36
CXCL12-208	ENST00000496375	PTOV1	Q86YD1	416 aa		12.79	□□□□□ -0.36
CXCL12-208	ENST00000496375	TUSC5	Q8IXB3	177 aa		12.79	□□□□□ -0.36
CXCL12-208	ENST00000496375	ZNF614	Q8N883	585 aa		12.79	□□□□□ -0.36
CXCL12-208	ENST00000496375	ATP6V1C2	Q8NEY4	427 aa		12.79	□□□□□ -0.36
CXCL12-208	ENST00000496375	STEAP2	Q8NFT2	490 aa		12.79	□□□□□ -0.36
CXCL12-208	ENST00000496375	BBS10	Q8TAM1	723 aa		12.79	□□□□□ -0.36
CXCL12-208	ENST00000496375	BCAS4	Q8TDM0	211 aa		12.79	□□□□□ -0.36
CXCL12-208	ENST00000496375	SLC35B4	Q969S0	331 aa		12.79	□□□□□ -0.36
CXCL12-208	ENST00000496375	S100PBP	Q96BU1	408 aa		12.79	□□□□□ -0.36
CXCL12-208	ENST00000496375	SH3GL1	Q99961	368 aa		12.79	□□□□□ -0.36
CXCL12-208	ENST00000496375	TMEM204	Q9BSN7	226 aa		12.79	□□□□□ -0.36
CXCL12-208	ENST00000496375	NANOG	Q9H9S0	305 aa		12.79	□□□□□ -0.36
CXCL12-208	ENST00000496375	ST6GALNAC1	Q9NSC7	600 aa	Predicted RBP	12.79	□□□□□ -0.36
CXCL12-208	ENST00000496375	GPC6	Q9Y625	555 aa	Predicted RBP	12.79	□□□□□ -0.36
CXCL12-208	ENST00000496375	LOC100653049	A0A140TA62	436 aa		12.78	□□□□□ -0.36
CXCL12-208	ENST00000496375	GJE1	A6NN92	205 aa		12.78	□□□□□ -0.36
CXCL12-208	ENST00000496375	FAAH	O00519	579 aa		12.78	□□□□□ -0.36
CXCL12-208	ENST00000496375	HS3ST1	O14792	307 aa		12.78	□□□□□ -0.36
CXCL12-208	ENST00000496375	DCTN3	O75935	186 aa		12.78	□□□□□ -0.36
CXCL12-208	ENST00000496375	KRT34	O76011	436 aa		12.78	□□□□□ -0.36
CXCL12-208	ENST00000496375	PGM3	O95394	542 aa		12.78	□□□□□ -0.36
CXCL12-208	ENST00000496375	CNOT4	O95628	575 aa	Known RBP	12.78	□□□□□ -0.36
CXCL12-208	ENST00000496375	CSTA	P01040	98 aa		12.78	□□□□□ -0.36
CXCL12-208	ENST00000496375	PCBP3	P57721	371 aa	Known RBP	12.78	□□□□□ -0.36
CXCL12-208	ENST00000496375	MTPN	P58546	118 aa		12.78	□□□□□ -0.36
CXCL12-208	ENST00000496375	KCNJ10	P78508	379 aa		12.78	□□□□□ -0.36
CXCL12-208	ENST00000496375	CDK6	Q00534	326 aa		12.78	□□□□□ -0.36
CXCL12-208	ENST00000496375	TSC22D1	Q15714	1073 aa		12.78	□□□□□ -0.36
CXCL12-208	ENST00000496375	MMEL1	Q495T6	779 aa		12.78	□□□□□ -0.36
CXCL12-208	ENST00000496375	REEP3	Q6NUK4	255 aa		12.78	□□□□□ -0.36
CXCL12-208	ENST00000496375	FCRLA	Q7L513	359 aa		12.78	□□□□□ -0.36
CXCL12-208	ENST00000496375	CALHM3	Q86XJ0	350 aa		12.78	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms