RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 DSTNP60981 165 aa11.27□□□□□ -0.61
PTPRF-214ENST00000496043 PLAURQ03405 335 aa11.27□□□□□ -0.61
PTPRF-214ENST00000496043 EPS8Q12929 822 aa11.27□□□□□ -0.61
PTPRF-214ENST00000496043 PPA1Q15181 289 aa11.27□□□□□ -0.61
PTPRF-214ENST00000496043 STK11Q15831 433 aa11.27□□□□□ -0.61
PTPRF-214ENST00000496043 KRTAP21-3Q3LHN1 58 aa11.27□□□□□ -0.61
PTPRF-214ENST00000496043 TIMM23BQ5SRD1 257 aa11.27□□□□□ -0.61
PTPRF-214ENST00000496043 MRPL2Q5T653 305 aaKnown RBP11.27□□□□□ -0.61
PTPRF-214ENST00000496043 ABLIM2Q6H8Q1 611 aa11.27□□□□□ -0.61
PTPRF-214ENST00000496043 EPGNQ6UW88 154 aa11.27□□□□□ -0.61
PTPRF-214ENST00000496043 CLEC9AQ6UXN8 241 aa11.27□□□□□ -0.61
PTPRF-214ENST00000496043 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.27□□□□□ -0.61
PTPRF-214ENST00000496043 MAVSQ7Z434 540 aa11.27□□□□□ -0.61
PTPRF-214ENST00000496043 CCDC103Q8IW40 242 aa11.27□□□□□ -0.61
PTPRF-214ENST00000496043 ZNF433Q8N7K0 673 aaPredicted RBP11.27□□□□□ -0.61
PTPRF-214ENST00000496043 LILRB1Q8NHL6 650 aaPredicted RBP11.27□□□□□ -0.61
PTPRF-214ENST00000496043 IGFBPL1Q8WX77 278 aa11.27□□□□□ -0.61
PTPRF-214ENST00000496043 APH1AQ96BI3 265 aa11.27□□□□□ -0.61
PTPRF-214ENST00000496043 DNAJA3Q96EY1 480 aa11.27□□□□□ -0.61
PTPRF-214ENST00000496043 SMR3AQ99954 134 aa11.27□□□□□ -0.61
PTPRF-214ENST00000496043 ARMC7Q9H6L4 198 aa11.27□□□□□ -0.61
PTPRF-214ENST00000496043 CACYBPQ9HB71 228 aaKnown RBP11.27□□□□□ -0.61
PTPRF-214ENST00000496043 SLC6A13Q9NSD5 602 aa11.27□□□□□ -0.61
PTPRF-214ENST00000496043 ZNF701Q9NV72 531 aaPredicted RBP11.27□□□□□ -0.61
PTPRF-214ENST00000496043 PARPBPQ9NWS1 579 aa11.27□□□□□ -0.61
PTPRF-214ENST00000496043 USH1CQ9Y6N9 552 aa11.27□□□□□ -0.61
PTPRF-214ENST00000496043 ARID1AO14497 2285 aa11.26□□□□□ -0.61
PTPRF-214ENST00000496043 CIB4A0PJX0 185 aa11.26□□□□□ -0.61
PTPRF-214ENST00000496043 TMEM72A0PK05 275 aa11.26□□□□□ -0.61
PTPRF-214ENST00000496043 DPRXA6NFQ7 191 aa11.26□□□□□ -0.61
PTPRF-214ENST00000496043 CCT8L1PA6NM43 557 aa11.26□□□□□ -0.61
PTPRF-214ENST00000496043 TGDSO95455 350 aa11.26□□□□□ -0.61
PTPRF-214ENST00000496043 HOXB4P17483 251 aaPredicted RBP11.26□□□□□ -0.61
PTPRF-214ENST00000496043 EDNRAP25101 427 aa11.26□□□□□ -0.61
PTPRF-214ENST00000496043 SLC16A1P53985 500 aa11.26□□□□□ -0.61
PTPRF-214ENST00000496043 COPZ1P61923 177 aa11.26□□□□□ -0.61
PTPRF-214ENST00000496043 H3F3AP84243 136 aa11.26□□□□□ -0.61
PTPRF-214ENST00000496043 LTBQ06643 244 aa11.26□□□□□ -0.61
PTPRF-214ENST00000496043 LARS2Q15031 903 aaKnown RBP11.26□□□□□ -0.61
PTPRF-214ENST00000496043 MAPK11Q15759 364 aa11.26□□□□□ -0.61
PTPRF-214ENST00000496043 LIN52Q52LA3 116 aa11.26□□□□□ -0.61
PTPRF-214ENST00000496043 C6orf10Q5SRN2 563 aa11.26□□□□□ -0.61
PTPRF-214ENST00000496043 DNAJC14Q6Y2X3 702 aaPredicted RBP11.26□□□□□ -0.61
PTPRF-214ENST00000496043 VRK2Q86Y07 508 aa11.26□□□□□ -0.61
PTPRF-214ENST00000496043 SMAP2Q8WU79 429 aaPredicted RBP11.26□□□□□ -0.61
PTPRF-214ENST00000496043 SLC38A5Q8WUX1 472 aa11.26□□□□□ -0.61
PTPRF-214ENST00000496043 VPS33AQ96AX1 596 aa11.26□□□□□ -0.61
PTPRF-214ENST00000496043 C7orf26Q96N11 449 aa11.26□□□□□ -0.61
PTPRF-214ENST00000496043 RAD21L1Q9H4I0 556 aa11.26□□□□□ -0.61
PTPRF-214ENST00000496043 RLIMQ9NVW2 624 aa11.26□□□□□ -0.61
PTPRF-214ENST00000496043 ASB6Q9NWX5 421 aa11.26□□□□□ -0.61
PTPRF-214ENST00000496043 LAMP3Q9UQV4 416 aa11.26□□□□□ -0.61
PTPRF-214ENST00000496043 IFT52Q9Y366 437 aa11.26□□□□□ -0.61
PTPRF-214ENST00000496043 PCDHB14Q9Y5E9 798 aa11.26□□□□□ -0.61
PTPRF-214ENST00000496043 DSCAMO60469 2012 aa11.26□□□□□ -0.61
PTPRF-214ENST00000496043 ROS1P08922 2347 aa11.25□□□□□ -0.61
PTPRF-214ENST00000496043 CDHR4A6H8M9 788 aa11.25□□□□□ -0.61
PTPRF-214ENST00000496043 OR5H1A6NKK0 313 aa11.25□□□□□ -0.61
PTPRF-214ENST00000496043 H7C1Q1 480 aa11.25□□□□□ -0.61
PTPRF-214ENST00000496043 CLIC1O00299 241 aa11.25□□□□□ -0.61
PTPRF-214ENST00000496043 IGHV3-9P01782 118 aa11.25□□□□□ -0.61
PTPRF-214ENST00000496043 BCHEP06276 602 aa11.25□□□□□ -0.61
PTPRF-214ENST00000496043 GKN3PP0CG01 181 aa11.25□□□□□ -0.61
PTPRF-214ENST00000496043 IMPDH2P12268 514 aa11.25□□□□□ -0.61
PTPRF-214ENST00000496043 COX5AP20674 150 aa11.25□□□□□ -0.61
PTPRF-214ENST00000496043 NTF4P34130 210 aa11.25□□□□□ -0.61
PTPRF-214ENST00000496043 ACAA2P42765 397 aaKnown RBP11.25□□□□□ -0.61
PTPRF-214ENST00000496043 ATP5J2P56134 94 aa11.25□□□□□ -0.61
PTPRF-214ENST00000496043 STX1BP61266 288 aa11.25□□□□□ -0.61
PTPRF-214ENST00000496043 RPS4XP62701 263 aaKnown RBP11.25□□□□□ -0.61
PTPRF-214ENST00000496043 BSPH1Q075Z2 132 aa11.25□□□□□ -0.61
PTPRF-214ENST00000496043 RGNQ15493 299 aa11.25□□□□□ -0.61
PTPRF-214ENST00000496043 ZNF672Q499Z4 452 aaPredicted RBP11.25□□□□□ -0.61
PTPRF-214ENST00000496043 WBP2NLQ6ICG8 309 aa11.25□□□□□ -0.61
PTPRF-214ENST00000496043 Q71RC1 249 aaPredicted RBP11.25□□□□□ -0.61
PTPRF-214ENST00000496043 OR9I1Q8NGQ6 314 aa11.25□□□□□ -0.61
PTPRF-214ENST00000496043 LRRC8CQ8TDW0 803 aa11.25□□□□□ -0.61
PTPRF-214ENST00000496043 GTF2H4Q92759 462 aa11.25□□□□□ -0.61
PTPRF-214ENST00000496043 FBXW5Q969U6 566 aa11.25□□□□□ -0.61
PTPRF-214ENST00000496043 TRMT61AQ96FX7 289 aaKnown RBP11.25□□□□□ -0.61
PTPRF-214ENST00000496043 SPATA9Q9BWV2 254 aa11.25□□□□□ -0.61
PTPRF-214ENST00000496043 FREM1Q5H8C1 2179 aa11.25□□□□□ -0.61
PTPRF-214ENST00000496043 ZFHX3Q15911 3703 aa11.24□□□□□ -0.61
PTPRF-214ENST00000496043 SMAD7O15105 426 aaKnown RBP11.24□□□□□ -0.61
PTPRF-214ENST00000496043 POLR3GO15318 223 aaPredicted RBP11.24□□□□□ -0.61
PTPRF-214ENST00000496043 RAMP1O60894 148 aa11.24□□□□□ -0.61
PTPRF-214ENST00000496043 LY6G6DO95868 133 aa11.24□□□□□ -0.61
PTPRF-214ENST00000496043 GPIP06744 558 aa11.24□□□□□ -0.61
PTPRF-214ENST00000496043 THBS1P07996 1170 aa11.24□□□□□ -0.61
PTPRF-214ENST00000496043 DANCRP0C864 163 aa11.24□□□□□ -0.61
PTPRF-214ENST00000496043 NCF2P19878 526 aaPredicted RBP11.24□□□□□ -0.61
PTPRF-214ENST00000496043 IDUAP35475 653 aa11.24□□□□□ -0.61
PTPRF-214ENST00000496043 MRPL19P49406 292 aaKnown RBP11.24□□□□□ -0.61
PTPRF-214ENST00000496043 FAPQ12884 760 aa11.24□□□□□ -0.61
PTPRF-214ENST00000496043 CEACAM7Q14002 265 aa11.24□□□□□ -0.61
PTPRF-214ENST00000496043 SLC17A1Q14916 467 aa11.24□□□□□ -0.61
PTPRF-214ENST00000496043 GTDC1Q4AE62 458 aa11.24□□□□□ -0.61
PTPRF-214ENST00000496043 ZNF311Q5JNZ3 666 aa11.24□□□□□ -0.61
PTPRF-214ENST00000496043 RNF220Q5VTB9 566 aa11.24□□□□□ -0.61
PTPRF-214ENST00000496043 PRAMEF8Q5VWM4 474 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms