RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 C19orf57Q0VDD7 668 aa17.48■□□□□ 0.39
USP39-218ENST00000493829 SELENBP1Q13228 472 aa17.48■□□□□ 0.39
USP39-218ENST00000493829 SLC10A1Q14973 349 aa17.48■□□□□ 0.39
USP39-218ENST00000493829 CMPK2Q5EBM0 449 aa17.48■□□□□ 0.39
USP39-218ENST00000493829 C1QL3Q5VWW1 255 aa17.48■□□□□ 0.39
USP39-218ENST00000493829 TRILQ7L0X0 811 aa17.48■□□□□ 0.39
USP39-218ENST00000493829 PRICKLE2Q7Z3G6 844 aa17.48■□□□□ 0.39
USP39-218ENST00000493829 HIPK1Q86Z02 1210 aa17.48■□□□□ 0.39
USP39-218ENST00000493829 UBQLNLQ8IYU4 475 aa17.48■□□□□ 0.39
USP39-218ENST00000493829 CBR4Q8N4T8 237 aa17.48■□□□□ 0.39
USP39-218ENST00000493829 C10orf53Q8N6V4 93 aa17.48■□□□□ 0.39
USP39-218ENST00000493829 PIGXQ8TBF5 258 aa17.48■□□□□ 0.39
USP39-218ENST00000493829 GTPBP3Q969Y2 492 aaKnown RBP17.48■□□□□ 0.39
USP39-218ENST00000493829 KTI12Q96EK9 354 aaPredicted RBP17.48■□□□□ 0.39
USP39-218ENST00000493829 ZNF426Q9BUY5 554 aa17.48■□□□□ 0.39
USP39-218ENST00000493829 ZDHHC11Q9H8X9 412 aa17.48■□□□□ 0.39
USP39-218ENST00000493829 SMURF2Q9HAU4 748 aa17.48■□□□□ 0.39
USP39-218ENST00000493829 NPIPA1Q9UND3 350 aa17.48■□□□□ 0.39
USP39-218ENST00000493829 NBEAQ8NFP9 2946 aa17.48■□□□□ 0.39
USP39-218ENST00000493829 SOCS2O14508 198 aa17.48■□□□□ 0.39
USP39-218ENST00000493829 EI24O14681 340 aa17.48■□□□□ 0.39
USP39-218ENST00000493829 SEC14L5O43304 696 aa17.48■□□□□ 0.39
USP39-218ENST00000493829 FUT1P19526 365 aa17.48■□□□□ 0.39
USP39-218ENST00000493829 POU3F2P20265 443 aaPredicted RBP17.48■□□□□ 0.39
USP39-218ENST00000493829 ADH6P28332 368 aa17.48■□□□□ 0.39
USP39-218ENST00000493829 IL1RL1Q01638 556 aa17.48■□□□□ 0.39
USP39-218ENST00000493829 ZNF800Q2TB10 664 aaPredicted RBP eCLIP17.48■□□□□ 0.396e-7■□□□□ 9.1
USP39-218ENST00000493829 PRR30Q53SZ7 412 aaPredicted RBP17.48■□□□□ 0.39
USP39-218ENST00000493829 PGBD2Q6P3X8 592 aa17.48■□□□□ 0.39
USP39-218ENST00000493829 PCSK4Q6UW60 755 aa17.48■□□□□ 0.39
USP39-218ENST00000493829 FAM180AQ6UWF9 173 aa17.48■□□□□ 0.39
USP39-218ENST00000493829 ATG16L2Q8NAA4 619 aa17.48■□□□□ 0.39
USP39-218ENST00000493829 QPCTLQ9NXS2 382 aa17.48■□□□□ 0.39
USP39-218ENST00000493829 SPIN1Q9Y657 262 aaPredicted RBP17.48■□□□□ 0.39
USP39-218ENST00000493829 A8MVM7 634 aa17.47■□□□□ 0.39
USP39-218ENST00000493829 ZNHIT1O43257 154 aa17.47■□□□□ 0.39
USP39-218ENST00000493829 ELK4P28324 431 aa17.47■□□□□ 0.39
USP39-218ENST00000493829 HSF1Q00613 529 aa17.47■□□□□ 0.39
USP39-218ENST00000493829 INAQ16352 499 aa17.47■□□□□ 0.39
USP39-218ENST00000493829 GLYR1Q49A26 553 aaPredicted RBP17.47■□□□□ 0.39
USP39-218ENST00000493829 SYT14P1Q58G82 188 aa17.47■□□□□ 0.39
USP39-218ENST00000493829 RPUSD3Q6P087 351 aaKnown RBP17.47■□□□□ 0.39
USP39-218ENST00000493829 CISD2Q8N5K1 135 aaKnown RBP17.47■□□□□ 0.39
USP39-218ENST00000493829 MED12Q93074 2177 aa17.47■□□□□ 0.39
USP39-218ENST00000493829 DDIT4LQ96D03 193 aa17.47■□□□□ 0.39
USP39-218ENST00000493829 ARL5BQ96KC2 179 aa17.47■□□□□ 0.39
USP39-218ENST00000493829 HS6ST2Q96MM7 605 aa17.47■□□□□ 0.39
USP39-218ENST00000493829 OR5B2Q96R09 309 aa17.47■□□□□ 0.39
USP39-218ENST00000493829 FEVQ99581 238 aa17.47■□□□□ 0.39
USP39-218ENST00000493829 TMEM43Q9BTV4 400 aa17.47■□□□□ 0.39
USP39-218ENST00000493829 C9orf16Q9BUW7 83 aa17.47■□□□□ 0.39
USP39-218ENST00000493829 COQ10BQ9H8M1 238 aa17.47■□□□□ 0.39
USP39-218ENST00000493829 MRPS18CQ9Y3D5 142 aaKnown RBP17.47■□□□□ 0.39
USP39-218ENST00000493829 TRGV5A0A0B4J1U4 118 aa17.46■□□□□ 0.39
USP39-218ENST00000493829 A0A1W2PNR3 127 aa17.46■□□□□ 0.39
USP39-218ENST00000493829 H0YC42 278 aa17.46■□□□□ 0.39
USP39-218ENST00000493829 CASQ2O14958 399 aaPredicted RBP17.46■□□□□ 0.39
USP39-218ENST00000493829 CH25HO95992 272 aa17.46■□□□□ 0.39
USP39-218ENST00000493829 MAKP20794 623 aa17.46■□□□□ 0.39
USP39-218ENST00000493829 TPD52P55327 224 aaPredicted RBP17.46■□□□□ 0.39
USP39-218ENST00000493829 GFRA1P56159 465 aa17.46■□□□□ 0.39
USP39-218ENST00000493829 SNCBQ16143 134 aa17.46■□□□□ 0.39
USP39-218ENST00000493829 TMEM176BQ3YBM2 270 aaPredicted RBP17.46■□□□□ 0.39
USP39-218ENST00000493829 C1orf140Q5VVS0 124 aa17.46■□□□□ 0.39
USP39-218ENST00000493829 ZNF770Q6IQ21 691 aaPredicted RBP17.46■□□□□ 0.39
USP39-218ENST00000493829 ZBTB49Q6ZSB9 765 aa17.46■□□□□ 0.39
USP39-218ENST00000493829 ZER1Q7Z7L7 766 aa17.46■□□□□ 0.39
USP39-218ENST00000493829 GALNT4Q8N4A0 578 aa17.46■□□□□ 0.39
USP39-218ENST00000493829 BPIFA2Q96DR5 249 aa17.46■□□□□ 0.39
USP39-218ENST00000493829 SLC29A1Q99808 456 aa17.46■□□□□ 0.39
USP39-218ENST00000493829 NIPSNAP1Q9BPW8 284 aa17.46■□□□□ 0.39
USP39-218ENST00000493829 SPENQ96T58 3664 aaKnown RBP17.46■□□□□ 0.39
USP39-218ENST00000493829 AHSA1O95433 338 aa17.45■□□□□ 0.38
USP39-218ENST00000493829 GASTP01350 101 aa17.45■□□□□ 0.38
USP39-218ENST00000493829 OMPP47874 163 aa17.45■□□□□ 0.38
USP39-218ENST00000493829 PTDSS1P48651 473 aaKnown RBP17.45■□□□□ 0.38
USP39-218ENST00000493829 CLDN20P56880 219 aa17.45■□□□□ 0.38
USP39-218ENST00000493829 KLRB1Q12918 225 aa17.45■□□□□ 0.38
USP39-218ENST00000493829 C3AR1Q16581 482 aa17.45■□□□□ 0.38
USP39-218ENST00000493829 OGFRL1Q5TC84 451 aaPredicted RBP17.45■□□□□ 0.38
USP39-218ENST00000493829 GALNT5Q7Z7M9 940 aa17.45■□□□□ 0.38
USP39-218ENST00000493829 SIAH3Q8IW03 269 aa17.45■□□□□ 0.38
USP39-218ENST00000493829 MAGEE2Q8TD90 523 aaPredicted RBP17.45■□□□□ 0.38
USP39-218ENST00000493829 TAAR8Q969N4 342 aa17.45■□□□□ 0.38
USP39-218ENST00000493829 SLC25A36Q96CQ1 311 aa17.45■□□□□ 0.38
USP39-218ENST00000493829 NRBF2Q96F24 287 aa17.45■□□□□ 0.38
USP39-218ENST00000493829 GPA33Q99795 319 aa17.45■□□□□ 0.38
USP39-218ENST00000493829 GABARAPL1Q9H0R8 117 aa17.45■□□□□ 0.38
USP39-218ENST00000493829 ACKR4Q9NPB9 350 aa17.45■□□□□ 0.38
USP39-218ENST00000493829 KRCC1Q9NPI7 259 aaPredicted RBP17.45■□□□□ 0.38
USP39-218ENST00000493829 SPRR3Q9UBC9 169 aa17.45■□□□□ 0.38
USP39-218ENST00000493829 MPDZO75970 2070 aa17.45■□□□□ 0.38
USP39-218ENST00000493829 TRAV36DV7A0A075B6V5 113 aa17.45■□□□□ 0.38
USP39-218ENST00000493829 ZNF208O43345 1280 aa17.45■□□□□ 0.38
USP39-218ENST00000493829 CRYABP02511 175 aaKnown RBP17.45■□□□□ 0.38
USP39-218ENST00000493829 SAGP10523 405 aaPredicted RBP17.45■□□□□ 0.38
USP39-218ENST00000493829 GCKP35557 465 aa17.45■□□□□ 0.38
USP39-218ENST00000493829 SRYQ05066 204 aa17.45■□□□□ 0.38
USP39-218ENST00000493829 PRKCDQ05655 676 aa17.45■□□□□ 0.38
USP39-218ENST00000493829 MYBPHQ13203 477 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms