RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 DHPSP49366 369 aaPredicted RBP19.3■□□□□ 0.68
CCDC88B-208ENST00000492980 RPS4XP62701 263 aaKnown RBP19.3■□□□□ 0.68
CCDC88B-208ENST00000492980 ELOA3BQ3SY89 546 aa19.3■□□□□ 0.68
CCDC88B-208ENST00000492980 KANSL1Q7Z3B3 1105 aa19.3■□□□□ 0.68
CCDC88B-208ENST00000492980 TMPRSS9Q7Z410 1059 aa19.3■□□□□ 0.68
CCDC88B-208ENST00000492980 MARCH9Q86YJ5 346 aa19.3■□□□□ 0.68
CCDC88B-208ENST00000492980 POC5Q8NA72 575 aa19.3■□□□□ 0.68
CCDC88B-208ENST00000492980 FAM98AQ8NCA5 519 aaKnown RBP19.3■□□□□ 0.68
CCDC88B-208ENST00000492980 ELOA3Q8NG57 546 aa19.3■□□□□ 0.68
CCDC88B-208ENST00000492980 SMPDL3BQ92485 455 aa19.3■□□□□ 0.68
CCDC88B-208ENST00000492980 DAZLQ92904 295 aaKnown RBP19.3■□□□□ 0.68
CCDC88B-208ENST00000492980 ART5Q96L15 291 aa19.3■□□□□ 0.68
CCDC88B-208ENST00000492980 CCDC32Q9BV29 185 aa19.3■□□□□ 0.68
CCDC88B-208ENST00000492980 KLHL21Q9UJP4 597 aa19.3■□□□□ 0.68
CCDC88B-208ENST00000492980 SMIM30A4D0T7 59 aa19.3■□□□□ 0.68
CCDC88B-208ENST00000492980 GTPBP1O00178 669 aaKnown RBP19.3■□□□□ 0.68
CCDC88B-208ENST00000492980 RNF13O43567 381 aa19.3■□□□□ 0.68
CCDC88B-208ENST00000492980 MST1P26927 711 aa19.3■□□□□ 0.68
CCDC88B-208ENST00000492980 ZNF85Q03923 595 aa19.3■□□□□ 0.68
CCDC88B-208ENST00000492980 CDC20Q12834 499 aa19.3■□□□□ 0.68
CCDC88B-208ENST00000492980 GPR50Q13585 617 aa19.3■□□□□ 0.68
CCDC88B-208ENST00000492980 INSL4Q14641 139 aa19.3■□□□□ 0.68
CCDC88B-208ENST00000492980 GXYLT1Q4G148 440 aa19.3■□□□□ 0.68
CCDC88B-208ENST00000492980 DPY19L2P2Q6ZN68 376 aa19.3■□□□□ 0.68
CCDC88B-208ENST00000492980 RNF31Q96EP0 1072 aa19.3■□□□□ 0.68
CCDC88B-208ENST00000492980 GUCD1Q96NT3 240 aa19.3■□□□□ 0.68
CCDC88B-208ENST00000492980 MIXL1Q9H2W2 232 aa19.3■□□□□ 0.68
CCDC88B-208ENST00000492980 PRDM6Q9NQX0 595 aa19.3■□□□□ 0.68
CCDC88B-208ENST00000492980 ZNF229Q9UJW7 825 aa19.3■□□□□ 0.68
CCDC88B-208ENST00000492980 MKL2Q9ULH7 1088 aa19.3■□□□□ 0.68
CCDC88B-208ENST00000492980 ATXN7L1Q9ULK2 861 aaPredicted RBP19.3■□□□□ 0.68
CCDC88B-208ENST00000492980 ADAM18Q9Y3Q7 739 aa19.3■□□□□ 0.68
CCDC88B-208ENST00000492980 CABIN1Q9Y6J0 2220 aa19.3■□□□□ 0.68
CCDC88B-208ENST00000492980 CDC14CA4D256 554 aa19.29■□□□□ 0.68
CCDC88B-208ENST00000492980 TMEM71Q6P5X7 295 aa19.29■□□□□ 0.68
CCDC88B-208ENST00000492980 SMAP2Q8WU79 429 aaPredicted RBP19.29■□□□□ 0.68
CCDC88B-208ENST00000492980 ZNF524Q96C55 264 aa19.29■□□□□ 0.68
CCDC88B-208ENST00000492980 KLHDC3Q9BQ90 382 aa19.29■□□□□ 0.68
CCDC88B-208ENST00000492980 NEURL2Q9BR09 285 aa19.29■□□□□ 0.68
CCDC88B-208ENST00000492980 TMEM43Q9BTV4 400 aa19.29■□□□□ 0.68
CCDC88B-208ENST00000492980 TRIM36Q9NQ86 728 aa19.29■□□□□ 0.68
CCDC88B-208ENST00000492980 CTSFQ9UBX1 484 aa19.29■□□□□ 0.68
CCDC88B-208ENST00000492980 SEC16AO15027 2179 aa19.29■□□□□ 0.68
CCDC88B-208ENST00000492980 CD8B2A6NJW9 211 aa19.28■□□□□ 0.68
CCDC88B-208ENST00000492980 IGF2P01344 180 aa19.28■□□□□ 0.68
CCDC88B-208ENST00000492980 CD8BP10966 210 aa19.28■□□□□ 0.68
CCDC88B-208ENST00000492980 GALP22466 123 aa19.28■□□□□ 0.68
CCDC88B-208ENST00000492980 LCN1P31025 176 aa19.28■□□□□ 0.68
CCDC88B-208ENST00000492980 RPL4P36578 427 aaKnown RBP19.28■□□□□ 0.68
CCDC88B-208ENST00000492980 POU4F2Q12837 409 aa19.28■□□□□ 0.68
CCDC88B-208ENST00000492980 AGAP7PQ5VUJ5 663 aa19.28■□□□□ 0.68
CCDC88B-208ENST00000492980 FAAH2Q6GMR7 532 aa19.28■□□□□ 0.68
CCDC88B-208ENST00000492980 ZNF574Q6ZN55 896 aaPredicted RBP19.28■□□□□ 0.68
CCDC88B-208ENST00000492980 TMEM91Q6ZNR0 172 aa19.28■□□□□ 0.68
CCDC88B-208ENST00000492980 COX15Q7KZN9 410 aa19.28■□□□□ 0.68
CCDC88B-208ENST00000492980 IER2Q9BTL4 223 aa19.28■□□□□ 0.68
CCDC88B-208ENST00000492980 RTN4RQ9BZR6 473 aa19.28■□□□□ 0.68
CCDC88B-208ENST00000492980 WWTR1Q9GZV5 400 aa19.28■□□□□ 0.68
CCDC88B-208ENST00000492980 ABCB9Q9NP78 766 aa19.28■□□□□ 0.68
CCDC88B-208ENST00000492980 ZMIZ1Q9ULJ6 1067 aa19.28■□□□□ 0.68
CCDC88B-208ENST00000492980 POLHQ9Y253 713 aa19.28■□□□□ 0.68
CCDC88B-208ENST00000492980 TNRC6BQ9UPQ9 1833 aaKnown RBP19.28■□□□□ 0.68
CCDC88B-208ENST00000492980 CACNA1EQ15878 2313 aa19.28■□□□□ 0.68
CCDC88B-208ENST00000492980 HTR3EA5X5Y0 456 aa19.28■□□□□ 0.68
CCDC88B-208ENST00000492980 BOLA2-SMG1P6H3BVE0 249 aa19.28■□□□□ 0.68
CCDC88B-208ENST00000492980 CASKO14936 926 aa19.28■□□□□ 0.68
CCDC88B-208ENST00000492980 TO15178 435 aa19.28■□□□□ 0.68
CCDC88B-208ENST00000492980 TOX3O15405 576 aaPredicted RBP19.28■□□□□ 0.68
CCDC88B-208ENST00000492980 MT-ND5P03915 603 aa19.28■□□□□ 0.68
CCDC88B-208ENST00000492980 NR0B1P51843 470 aaKnown RBP19.28■□□□□ 0.68
CCDC88B-208ENST00000492980 CAV3P56539 151 aa19.28■□□□□ 0.68
CCDC88B-208ENST00000492980 HLA-DQA1Q5Y7H0 255 aa19.28■□□□□ 0.68
CCDC88B-208ENST00000492980 GALNT6Q8NCL4 622 aa19.28■□□□□ 0.68
CCDC88B-208ENST00000492980 OR1N1Q8NGS0 311 aa19.28■□□□□ 0.68
CCDC88B-208ENST00000492980 NEIL3Q8TAT5 605 aa19.28■□□□□ 0.68
CCDC88B-208ENST00000492980 LAT2Q9GZY6 243 aa19.28■□□□□ 0.68
CCDC88B-208ENST00000492980 CPNE5Q9HCH3 593 aa19.28■□□□□ 0.68
CCDC88B-208ENST00000492980 NRIP3Q9NQ35 241 aa19.28■□□□□ 0.68
CCDC88B-208ENST00000492980 SLC22A11Q9NSA0 550 aa19.28■□□□□ 0.68
CCDC88B-208ENST00000492980 COPS7AQ9UBW8 275 aa19.28■□□□□ 0.68
CCDC88B-208ENST00000492980 SHISA3A0PJX4 238 aa19.27■□□□□ 0.68
CCDC88B-208ENST00000492980 ARPC3O15145 178 aa19.27■□□□□ 0.68
CCDC88B-208ENST00000492980 TSPAN2O60636 221 aa19.27■□□□□ 0.68
CCDC88B-208ENST00000492980 PTTG1O95997 202 aa19.27■□□□□ 0.68
CCDC88B-208ENST00000492980 IL12BP29460 328 aa19.27■□□□□ 0.68
CCDC88B-208ENST00000492980 ACTC1P68032 377 aa19.27■□□□□ 0.68
CCDC88B-208ENST00000492980 ACTA1P68133 377 aa19.27■□□□□ 0.68
CCDC88B-208ENST00000492980 ZNF79Q15937 498 aa19.27■□□□□ 0.68
CCDC88B-208ENST00000492980 GUSBP11Q6P575 273 aa19.27■□□□□ 0.68
CCDC88B-208ENST00000492980 LANCL3Q6ZV70 420 aa19.27■□□□□ 0.68
CCDC88B-208ENST00000492980 OR5W2Q8NH69 310 aa19.27■□□□□ 0.68
CCDC88B-208ENST00000492980 AP3S1Q92572 193 aa19.27■□□□□ 0.68
CCDC88B-208ENST00000492980 GPX7Q96SL4 187 aaPredicted RBP19.27■□□□□ 0.68
CCDC88B-208ENST00000492980 LY6G6EA0A0G2JKS1 128 aa19.27■□□□□ 0.67
CCDC88B-208ENST00000492980 A0A1W2PQL4 384 aaPredicted RBP19.27■□□□□ 0.67
CCDC88B-208ENST00000492980 E9PI62 339 aa19.27■□□□□ 0.67
CCDC88B-208ENST00000492980 RGS9O75916 674 aaPredicted RBP19.27■□□□□ 0.67
CCDC88B-208ENST00000492980 PNLIPP16233 465 aa19.27■□□□□ 0.67
CCDC88B-208ENST00000492980 ZNF117Q03924 483 aa19.27■□□□□ 0.67
CCDC88B-208ENST00000492980 ZNF74Q16587 644 aa19.27■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms