RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 ITIH1P19827 911 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 PSMA2P25787 234 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 GIFP27352 417 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 RPA1P27694 616 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 BMI1P35226 326 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 NUP62P37198 522 aaPredicted RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 GP5P40197 560 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 CD79BP40259 229 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 CSKP41240 450 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 RPS9P46781 194 aaKnown RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 MEOX2P50222 304 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 CDK9P50750 372 aaKnown RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 RIDAP52758 137 aaKnown RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 UCNP55089 124 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 NUP107P57740 925 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 EIF3EP60228 445 aaKnown RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 ACTR1AP61163 376 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 MAGOHP61326 146 aaKnown RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 PSMC5P62195 406 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 PSPHP78330 225 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 HSF2Q03933 536 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 ZNF33AQ06730 810 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 CYP24A1Q07973 514 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 ART3Q13508 389 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 SCARB2Q14108 478 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 FLOT2Q14254 428 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 MESDQ14696 234 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 ARHGAP19Q14CB8 494 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 PDK3Q15120 406 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 CDK10Q15131 360 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 IRF4Q15306 451 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 TSC22D1Q15714 1073 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 STXBP2Q15833 593 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 CARTPTQ16568 116 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 KYNUQ16719 465 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 PPP1R3AQ16821 1122 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 TMEM44Q2T9K0 475 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 ZNF829Q3KNS6 432 aaPredicted RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 ZRANB3Q5FWF4 1079 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 TCTEX1D4Q5JR98 221 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 PPM1LQ5SGD2 360 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 MARCH8Q5T0T0 291 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 DDX59Q5T1V6 619 aaKnown RBP eCLIP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 MPP7Q5T2T1 576 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 AGBL2Q5U5Z8 902 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 AGAP7PQ5VUJ5 663 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 RSBN1Q5VWQ0 802 aaPredicted RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 LIPNQ5VXI9 398 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 SLX4IPQ5VYV7 408 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 ETFRF1Q6IPR1 90 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 NANOGP8Q6NSW7 305 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 APOBEC3HQ6NTF7 200 aaKnown RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 SLC25A24Q6NUK1 477 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 RWDD4Q6NW29 188 aaKnown RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 ZNF774Q6NX45 483 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 RPUSD3Q6P087 351 aaKnown RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 ZNF343Q6P1L6 599 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 EMBQ6PCB8 327 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 RFWD3Q6PCD5 774 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 BLOC1S2Q6QNY1 142 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 UGT2A3Q6UWM9 527 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 CLEC18BQ6UXF7 455 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 TMEM184AQ6ZMB5 413 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 GDPGP1Q6ZNW5 385 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 RTL4Q6ZR62 310 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 MSANTD1Q6ZTZ1 278 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 C15orf52Q6ZUT6 534 aaKnown RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 SNX20Q7Z614 316 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 DPPA2Q7Z7J5 298 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 FAM131BQ86XD5 332 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 CATSPER3Q86XQ3 398 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 PSTKQ8IV42 348 aaKnown RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 NUDCD3Q8IVD9 361 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 CDKL3Q8IVW4 592 aaPredicted RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 OR4N5Q8IXE1 308 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 KLHL7Q8IXQ5 586 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 SLC39A11Q8N1S5 342 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 SLC43A2Q8N370 569 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 PRSS35Q8N3Z0 413 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 MMGT1Q8N4V1 131 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 POM121L12Q8N7R1 296 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 LRTM2Q8N967 370 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 TTC29Q8NA56 475 aaPredicted RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 SPATA4Q8NEY3 305 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 OR10G7Q8NGN6 311 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 AKR7LQ8NHP1 331 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 CLHC1Q8NHS4 586 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 RPLP0P6Q8NHW5 317 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 ZNF461Q8TAF7 563 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 PNPT1Q8TCS8 783 aaKnown RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 DTX3LQ8TDB6 740 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 ACTRT1Q8TDG2 376 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 HTR3CQ8WXA8 447 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 P2RX5Q93086 422 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 MYDGFQ969H8 173 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 TOMM40LQ969M1 308 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 TOP1MTQ969P6 601 aa1.78□□□□□ -2.12
HMGB1-208ENST00000490788 MAGOHBQ96A72 148 aaKnown RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 KIAA1143Q96AT1 154 aaPredicted RBP1.78□□□□□ -2.12
HMGB1-208ENST00000490788 EXOSC8Q96B26 276 aaKnown RBP1.78□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms