RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 PAIP1Q9H074 479 aaKnown RBP16.4■□□□□ 0.22
COL7A1-209ENST00000474432 TPT1P8Q9HAU6 139 aa16.4■□□□□ 0.22
COL7A1-209ENST00000474432 USH1CQ9Y6N9 552 aa16.4■□□□□ 0.22
COL7A1-209ENST00000474432 CSPG4Q6UVK1 2322 aa16.39■□□□□ 0.21
COL7A1-209ENST00000474432 ZNF208O43345 1280 aa16.39■□□□□ 0.21
COL7A1-209ENST00000474432 CNOT4O95628 575 aaKnown RBP16.39■□□□□ 0.21
COL7A1-209ENST00000474432 DANCRP0C864 163 aa16.39■□□□□ 0.21
COL7A1-209ENST00000474432 IL7RP16871 459 aa16.39■□□□□ 0.21
COL7A1-209ENST00000474432 FKBP2P26885 142 aaKnown RBP16.39■□□□□ 0.21
COL7A1-209ENST00000474432 SLC1A3P43003 542 aa16.39■□□□□ 0.21
COL7A1-209ENST00000474432 HTR3AP46098 478 aa16.39■□□□□ 0.21
COL7A1-209ENST00000474432 MRPL19P49406 292 aaKnown RBP16.39■□□□□ 0.21
COL7A1-209ENST00000474432 POLR2HP52434 150 aaKnown RBP16.39■□□□□ 0.21
COL7A1-209ENST00000474432 FOXG1P55316 489 aaPredicted RBP16.39■□□□□ 0.21
COL7A1-209ENST00000474432 CAPRIN1Q14444 709 aaKnown RBP16.39■□□□□ 0.21
COL7A1-209ENST00000474432 AGBL2Q5U5Z8 902 aa16.39■□□□□ 0.21
COL7A1-209ENST00000474432 ZNF836Q6ZNA1 936 aa16.39■□□□□ 0.21
COL7A1-209ENST00000474432 Q71RC1 249 aaPredicted RBP16.39■□□□□ 0.21
COL7A1-209ENST00000474432 OR52P1PQ8NH57 321 aa16.39■□□□□ 0.21
COL7A1-209ENST00000474432 USB1Q9BQ65 265 aaKnown RBP16.39■□□□□ 0.21
COL7A1-209ENST00000474432 SLCO1B3Q9NPD5 702 aa16.39■□□□□ 0.21
COL7A1-209ENST00000474432 NPAP1Q9NZP6 1156 aa16.39■□□□□ 0.21
COL7A1-209ENST00000474432 TMEM181Q9P2C4 612 aa16.39■□□□□ 0.21
COL7A1-209ENST00000474432 RNF115Q9Y4L5 304 aa16.39■□□□□ 0.21
COL7A1-209ENST00000474432 PLCE1Q9P212 2302 aa16.39■□□□□ 0.21
COL7A1-209ENST00000474432 FAM234BA2RU67 622 aa16.38■□□□□ 0.21
COL7A1-209ENST00000474432 CFAP73A6NFT4 308 aa16.38■□□□□ 0.21
COL7A1-209ENST00000474432 TRIM64A6NGJ6 449 aa16.38■□□□□ 0.21
COL7A1-209ENST00000474432 TRIM64BA6NI03 449 aa16.38■□□□□ 0.21
COL7A1-209ENST00000474432 H7C1Q1 480 aa16.38■□□□□ 0.21
COL7A1-209ENST00000474432 OVOL3O00110 214 aa16.38■□□□□ 0.21
COL7A1-209ENST00000474432 IGHV3-9P01782 118 aa16.38■□□□□ 0.21
COL7A1-209ENST00000474432 BCHEP06276 602 aa16.38■□□□□ 0.21
COL7A1-209ENST00000474432 NUDT7P0C024 238 aa16.38■□□□□ 0.21
COL7A1-209ENST00000474432 GKN3PP0CG01 181 aa16.38■□□□□ 0.21
COL7A1-209ENST00000474432 OR2B6P58173 313 aa16.38■□□□□ 0.21
COL7A1-209ENST00000474432 DSTNP60981 165 aa16.38■□□□□ 0.21
COL7A1-209ENST00000474432 BSPH1Q075Z2 132 aa16.38■□□□□ 0.21
COL7A1-209ENST00000474432 RPS26P11Q5JNZ5 115 aaPredicted RBP16.38■□□□□ 0.21
COL7A1-209ENST00000474432 FBXW9Q5XUX1 488 aa16.38■□□□□ 0.21
COL7A1-209ENST00000474432 FUNDC1Q8IVP5 155 aa16.38■□□□□ 0.21
COL7A1-209ENST00000474432 ZNF100Q8IYN0 542 aa16.38■□□□□ 0.21
COL7A1-209ENST00000474432 MIER2Q8N344 545 aa16.38■□□□□ 0.21
COL7A1-209ENST00000474432 CLIP4Q8N3C7 705 aa16.38■□□□□ 0.21
COL7A1-209ENST00000474432 ITCHQ96J02 903 aa16.38■□□□□ 0.21
COL7A1-209ENST00000474432 C7orf26Q96N11 449 aa16.38■□□□□ 0.21
COL7A1-209ENST00000474432 SLC52A3Q9NQ40 469 aa16.38■□□□□ 0.21
COL7A1-209ENST00000474432 P2RX2Q9UBL9 471 aa16.38■□□□□ 0.21
COL7A1-209ENST00000474432 PCDHB14Q9Y5E9 798 aa16.38■□□□□ 0.21
COL7A1-209ENST00000474432 PDLIM1O00151 329 aa16.37■□□□□ 0.21
COL7A1-209ENST00000474432 CD3EP07766 207 aa16.37■□□□□ 0.21
COL7A1-209ENST00000474432 SOD3P08294 240 aa16.37■□□□□ 0.21
COL7A1-209ENST00000474432 BMP2P12643 396 aa16.37■□□□□ 0.21
COL7A1-209ENST00000474432 PRG2P13727 222 aa16.37■□□□□ 0.21
COL7A1-209ENST00000474432 CRATP43155 626 aa16.37■□□□□ 0.21
COL7A1-209ENST00000474432 LTBQ06643 244 aa16.37■□□□□ 0.21
COL7A1-209ENST00000474432 SLC2A7Q6PXP3 512 aa16.37■□□□□ 0.21
COL7A1-209ENST00000474432 MSRB3Q8IXL7 192 aa16.37■□□□□ 0.21
COL7A1-209ENST00000474432 PEX5LQ8IYB4 626 aa16.37■□□□□ 0.21
COL7A1-209ENST00000474432 KBTBD8Q8NFY9 601 aa16.37■□□□□ 0.21
COL7A1-209ENST00000474432 PIGXQ8TBF5 258 aa16.37■□□□□ 0.21
COL7A1-209ENST00000474432 TMEM171Q8WVE6 324 aa16.37■□□□□ 0.21
COL7A1-209ENST00000474432 TMEM19Q96HH6 336 aa16.37■□□□□ 0.21
COL7A1-209ENST00000474432 EBF4Q9BQW3 602 aa16.37■□□□□ 0.21
COL7A1-209ENST00000474432 ESRP2Q9H6T0 727 aaKnown RBP16.37■□□□□ 0.21
COL7A1-209ENST00000474432 SLC25A37Q9NYZ2 338 aa16.37■□□□□ 0.21
COL7A1-209ENST00000474432 EMC3Q9P0I2 261 aa16.37■□□□□ 0.21
COL7A1-209ENST00000474432 ZNF443Q9Y2A4 671 aaPredicted RBP16.37■□□□□ 0.21
COL7A1-209ENST00000474432 NOSIPQ9Y314 301 aaKnown RBP16.37■□□□□ 0.21
COL7A1-209ENST00000474432 FLVCR1Q9Y5Y0 555 aa16.37■□□□□ 0.21
COL7A1-209ENST00000474432 OR5H1A6NKK0 313 aa16.36■□□□□ 0.21
COL7A1-209ENST00000474432 GPR171O14626 319 aa16.36■□□□□ 0.21
COL7A1-209ENST00000474432 CLOCKO15516 846 aa16.36■□□□□ 0.21
COL7A1-209ENST00000474432 TMCC2O75069 709 aa16.36■□□□□ 0.21
COL7A1-209ENST00000474432 LY6G6DO95868 133 aa16.36■□□□□ 0.21
COL7A1-209ENST00000474432 THBS1P07996 1170 aa16.36■□□□□ 0.21
COL7A1-209ENST00000474432 ADSLP30566 484 aaPredicted RBP16.36■□□□□ 0.21
COL7A1-209ENST00000474432 IDH3AP50213 366 aa16.36■□□□□ 0.21
COL7A1-209ENST00000474432 MAP2K6P52564 334 aa16.36■□□□□ 0.21
COL7A1-209ENST00000474432 GNA13Q14344 377 aa16.36■□□□□ 0.21
COL7A1-209ENST00000474432 SLC17A1Q14916 467 aa16.36■□□□□ 0.21
COL7A1-209ENST00000474432 PPA1Q15181 289 aa16.36■□□□□ 0.21
COL7A1-209ENST00000474432 RGNQ15493 299 aa16.36■□□□□ 0.21
COL7A1-209ENST00000474432 STK11Q15831 433 aa16.36■□□□□ 0.21
COL7A1-209ENST00000474432 ZNF672Q499Z4 452 aaPredicted RBP16.36■□□□□ 0.21
COL7A1-209ENST00000474432 TTMPQ5BVD1 217 aa16.36■□□□□ 0.21
COL7A1-209ENST00000474432 TIMM23BQ5SRD1 257 aa16.36■□□□□ 0.21
COL7A1-209ENST00000474432 RNF220Q5VTB9 566 aa16.36■□□□□ 0.21
COL7A1-209ENST00000474432 ZNF440Q8IYI8 595 aa16.36■□□□□ 0.21
COL7A1-209ENST00000474432 C10orf111Q8N326 155 aa16.36■□□□□ 0.21
COL7A1-209ENST00000474432 APH1AQ96BI3 265 aa16.36■□□□□ 0.21
COL7A1-209ENST00000474432 ZHX1-C8orf76Q96EF9 292 aa16.36■□□□□ 0.21
COL7A1-209ENST00000474432 TRIM2Q9C040 744 aa16.36■□□□□ 0.21
COL7A1-209ENST00000474432 RMND5AQ9H871 391 aa16.36■□□□□ 0.21
COL7A1-209ENST00000474432 NGBQ9NPG2 151 aa16.36■□□□□ 0.21
COL7A1-209ENST00000474432 SLAMF8Q9P0V8 285 aa16.36■□□□□ 0.21
COL7A1-209ENST00000474432 MALT1Q9UDY8 824 aa16.36■□□□□ 0.21
COL7A1-209ENST00000474432 LAMP3Q9UQV4 416 aa16.36■□□□□ 0.21
COL7A1-209ENST00000474432 LIPT2A6NK58 231 aa16.35■□□□□ 0.21
COL7A1-209ENST00000474432 SHISA9B4DS77 424 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms