RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 TRDCB7Z8K6 153 aa2□□□□□ -2.09
CCDC88A-212ENST00000474059 IGHG4P01861 327 aa2□□□□□ -2.09
CCDC88A-212ENST00000474059 GCAP28676 217 aa2□□□□□ -2.09
CCDC88A-212ENST00000474059 YWHABP31946 246 aaKnown RBP2□□□□□ -2.09
CCDC88A-212ENST00000474059 BTDP43251 543 aa2□□□□□ -2.09
CCDC88A-212ENST00000474059 CASP4P49662 377 aa2□□□□□ -2.09
CCDC88A-212ENST00000474059 PLK1P53350 603 aa2□□□□□ -2.09
CCDC88A-212ENST00000474059 AIF1P55008 147 aa2□□□□□ -2.09
CCDC88A-212ENST00000474059 BIDP55957 195 aa2□□□□□ -2.09
CCDC88A-212ENST00000474059 EXOC3L2Q2M3D2 409 aa2□□□□□ -2.09
CCDC88A-212ENST00000474059 XKR4Q5GH76 650 aa2□□□□□ -2.09
CCDC88A-212ENST00000474059 CENPPQ6IPU0 288 aa2□□□□□ -2.09
CCDC88A-212ENST00000474059 PMF1Q6P1K2 205 aa2□□□□□ -2.09
CCDC88A-212ENST00000474059 ACOT7LQ6ZUV0 252 aa2□□□□□ -2.09
CCDC88A-212ENST00000474059 NLRP9Q7RTR0 991 aa2□□□□□ -2.09
CCDC88A-212ENST00000474059 FAM220AQ7Z4H9 259 aa2□□□□□ -2.09
CCDC88A-212ENST00000474059 SLC35F2Q8IXU6 374 aa2□□□□□ -2.09
CCDC88A-212ENST00000474059 ZNF100Q8IYN0 542 aa2□□□□□ -2.09
CCDC88A-212ENST00000474059 ZNF679Q8IYX0 411 aa2□□□□□ -2.09
CCDC88A-212ENST00000474059 ZCCHC7Q8N3Z6 543 aaKnown RBP2□□□□□ -2.09
CCDC88A-212ENST00000474059 TMEM252Q8N6L7 170 aa2□□□□□ -2.09
CCDC88A-212ENST00000474059 Q8N9L7 120 aa2□□□□□ -2.09
CCDC88A-212ENST00000474059 BBS1Q8NFJ9 593 aa2□□□□□ -2.09
CCDC88A-212ENST00000474059 ANKRD49Q8WVL7 239 aa2□□□□□ -2.09
CCDC88A-212ENST00000474059 RAPGEF5Q92565 580 aa2□□□□□ -2.09
CCDC88A-212ENST00000474059 MRPS31Q92665 395 aaKnown RBP2□□□□□ -2.09
CCDC88A-212ENST00000474059 MARC2Q969Z3 335 aa2□□□□□ -2.09
CCDC88A-212ENST00000474059 EFHD2Q96C19 240 aaPredicted RBP2□□□□□ -2.09
CCDC88A-212ENST00000474059 SLC41A3Q96GZ6 507 aa2□□□□□ -2.09
CCDC88A-212ENST00000474059 COQ2Q96H96 371 aa2□□□□□ -2.09
CCDC88A-212ENST00000474059 TECTBQ96PL2 329 aa2□□□□□ -2.09
CCDC88A-212ENST00000474059 CCNL2Q96S94 520 aaPredicted RBP2□□□□□ -2.09
CCDC88A-212ENST00000474059 PLEKHF1Q96S99 279 aa2□□□□□ -2.09
CCDC88A-212ENST00000474059 NPAS2Q99743 824 aa2□□□□□ -2.09
CCDC88A-212ENST00000474059 CCT7Q99832 543 aa2□□□□□ -2.09
CCDC88A-212ENST00000474059 GAL3ST1Q99999 423 aa2□□□□□ -2.09
CCDC88A-212ENST00000474059 TMEM43Q9BTV4 400 aa2□□□□□ -2.09
CCDC88A-212ENST00000474059 VCPKMTQ9H867 229 aa2□□□□□ -2.09
CCDC88A-212ENST00000474059 ISG20L2Q9H9L3 353 aaKnown RBP2□□□□□ -2.09
CCDC88A-212ENST00000474059 MARCH5Q9NX47 278 aa2□□□□□ -2.09
CCDC88A-212ENST00000474059 C6orf203Q9P0P8 240 aaPredicted RBP2□□□□□ -2.09
CCDC88A-212ENST00000474059 DCDC2Q9UHG0 476 aa2□□□□□ -2.09
CCDC88A-212ENST00000474059 PRPF19Q9UMS4 504 aaKnown RBP2□□□□□ -2.09
CCDC88A-212ENST00000474059 RPAP1Q9BWH6 1393 aaPredicted RBP1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 TTC21BQ7Z4L5 1316 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 SPRR5A0A1B0GTR4 108 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 CLRN2A0PK11 232 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 IDSB3KWA1 339 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 F5H6K3 240 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 ZNF208O43345 1280 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 RIPK2O43353 540 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 PFKFB2O60825 505 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 SURF6O75683 361 aaKnown RBP1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 SCGNO76038 276 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 AP2A1O95782 977 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 IL1BP01584 269 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 LGALS2P05162 132 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 CAPN1P07384 714 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 HSMCR30P0CW71 290 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 RBMY1CP0DJD4 496 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 CCDC130P13994 396 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 NCK1P16333 377 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 COX5AP20674 150 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 HMGB2P26583 209 aaKnown RBP1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 ANXA13P27216 316 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 PTGDSP41222 190 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 MAP3K8P41279 467 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 GRIA1P42261 906 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 KLRC3Q07444 240 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 FGL1Q08830 312 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 KLRB1Q12918 225 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 PDK3Q15120 406 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 DPYSL2Q16555 572 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 NSUN5P1Q3KNT7 163 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 SFT2D3Q587I9 215 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 C1orf220Q5T0J3 134 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 GPRC6AQ5T6X5 926 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 OR4F3Q6IEY1 312 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 KDELC1Q6UW63 502 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 SCARA5Q6ZMJ2 495 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 Q6ZPB1 254 aaPredicted RBP1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 ARCQ7LC44 396 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 TMEM110Q86TL2 294 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 TGIF2LYQ8IUE0 185 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 CCDC50Q8IVM0 306 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 ALLCQ8N6M5 410 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 EIF1ADQ8N9N8 165 aaKnown RBP1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 OR2AP1Q8NGE2 309 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 OR5D13Q8NGL4 314 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 OR9A1PQ8NGU1 263 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 MAIP1Q8WWC4 291 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 CHCHD10Q8WYQ3 142 aaPredicted RBP1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 ST8SIA1Q92185 356 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 FRAT1Q92837 279 aaPredicted RBP1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 SMIM14Q96QK8 99 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 SECISBP2Q96T21 854 aaKnown RBP1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 NICN1Q9BSH3 213 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 GON7Q9BXV9 100 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 CAPS2Q9BXY5 557 aa1.99□□□□□ -2.09
CCDC88A-212ENST00000474059 MAGT1Q9H0U3 335 aa1.99□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms